Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos

Detalhes bibliográficos
Autor(a) principal: Salbego, Paulo Roberto dos Santos
Data de Publicação: 2018
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Manancial - Repositório Digital da UFSM
dARK ID: ark:/26339/0013000007pz2
Texto Completo: http://repositorio.ufsm.br/handle/1/29840
Resumo: This investigation reports the proposal of a new method to obtain quantitative indexes of similarity in crystals, using the supramolecular cluster as study demarcation. A series of tert-butyl pyrazoles were used as models for the proposal and application of the indexes. The indexes (IX) consider geometric (ID), contact area (IC) and stabilization energy (IG) parameters. In addition, a multiparameter index of similarity (IDCG) was proposed – in which the inheritance of the initial parameters is carried – to aid in the comparison between structures with only one final value. It was observed that the demarcation problem, in relation to the size of the studied system, is one of the problems in studies of supramolecular similarity. It was possible to establish a similarity range for the proposed indexes, where IX ≥ 0.80 (high similarity); 0.80 > IX > 0.60 (intermediate); IX < 0.60 (low), where X = D, C, G or DCG. It was observed that two highly similar systems must have an isostructural, isotopological and isoenergetic behavior. Similarity indexes were applied in a series of polymorphs, with different numbers of molecules in the asymmetric unit. It was determined different regions of similarity within the polymorphism phenomenon, being possible to determine the boundaries between quasi-isostructural polymorphs. A new similarity index – based on the types and normalized contribution of the total intermolecular interactions of each cluster (IQ) – was proposed. The IQ indicates to be a versatile tool and applicable even for systems that do not share any similarity. In addition, mechanisms of crystallization of new polymorphs have been proposed. It was possible to indicate the time in which the different triazene polymorphs (1IA and 1IIA) are formed during the nucleation process. Similarity indexes were also applied for the bisphenyltriazenes, and mechanisms of crystallization were proposed to study the selfassembly of this series. The hydrogen interactions between the triazenes and the stacking are present in almost all examples at some point of crystallization process. It was possible to evaluate the unique characteristics of a pyridine solvate and to compare it with the structure without solvent. The IDCG was presented as a robust comparative index for all the comparisons, taking into account the particularities of the systems in its final value. The multilinear correlation indicated a high contribution of the energy parameter (43%) to the final value of the IDCG, followed by geometric (31%) and contact area (27%) parameters. Therefore, the IG is an indispensable parameter in the analysis of supramolecular similarity of crystalline structures.
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spelling Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativosSimilarity of supramolecular structures in organic crystals: proposal of quantitative indexesEngenharia de cristaisSimilaridade supramolecularPolimorfosCristalizaçãoAutoassociaçãoSolvatoCrystal engineeringSupramolecular similarityPolymorphsCrystallizationSelf-assemblySolvateCNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICAThis investigation reports the proposal of a new method to obtain quantitative indexes of similarity in crystals, using the supramolecular cluster as study demarcation. A series of tert-butyl pyrazoles were used as models for the proposal and application of the indexes. The indexes (IX) consider geometric (ID), contact area (IC) and stabilization energy (IG) parameters. In addition, a multiparameter index of similarity (IDCG) was proposed – in which the inheritance of the initial parameters is carried – to aid in the comparison between structures with only one final value. It was observed that the demarcation problem, in relation to the size of the studied system, is one of the problems in studies of supramolecular similarity. It was possible to establish a similarity range for the proposed indexes, where IX ≥ 0.80 (high similarity); 0.80 > IX > 0.60 (intermediate); IX < 0.60 (low), where X = D, C, G or DCG. It was observed that two highly similar systems must have an isostructural, isotopological and isoenergetic behavior. Similarity indexes were applied in a series of polymorphs, with different numbers of molecules in the asymmetric unit. It was determined different regions of similarity within the polymorphism phenomenon, being possible to determine the boundaries between quasi-isostructural polymorphs. A new similarity index – based on the types and normalized contribution of the total intermolecular interactions of each cluster (IQ) – was proposed. The IQ indicates to be a versatile tool and applicable even for systems that do not share any similarity. In addition, mechanisms of crystallization of new polymorphs have been proposed. It was possible to indicate the time in which the different triazene polymorphs (1IA and 1IIA) are formed during the nucleation process. Similarity indexes were also applied for the bisphenyltriazenes, and mechanisms of crystallization were proposed to study the selfassembly of this series. The hydrogen interactions between the triazenes and the stacking are present in almost all examples at some point of crystallization process. It was possible to evaluate the unique characteristics of a pyridine solvate and to compare it with the structure without solvent. The IDCG was presented as a robust comparative index for all the comparisons, taking into account the particularities of the systems in its final value. The multilinear correlation indicated a high contribution of the energy parameter (43%) to the final value of the IDCG, followed by geometric (31%) and contact area (27%) parameters. Therefore, the IG is an indispensable parameter in the analysis of supramolecular similarity of crystalline structures.Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqEste trabalho relata a proposta de um novo método para obtenção de índices quantitativos de similaridade em cristais, utilizando o cluster supramolecular como demarcação do estudo. Uma série de tert-butil pirazóis foram utilizados como modelos para a proposta e aplicação dos índices. Os índices (IX) consideram parâmetros geométricos (ID), de área de contato (IC) e de energia de estabilização (IG). Além disso, um índice multiparâmetro de similaridade (IDCG) foi proposto, em que a herança dos parâmetros iniciais está embutida, para auxiliar na comparação entre estruturas com apenas um valor final. Foi observado que o problema de demarcação, em relação ao tamanho do sistema estudado, é um dos problemas em estudos de similaridade supramolecular. Foi possível estabelecer uma faixa de similaridade para os índices propostos, em que IX ≥ 0,80 (alta similaridade); 0,80 > IX > 0,60 (Intermediária); IX < 0,60 (baixa), sendo X = D, C, G ou DCG. Foi observado que dois sistemas altamente similares devem ter um comportamento isoestrutural, isotopológico e isoenergético. Os índices de similaridade foram aplicados em uma série de polimorfos, com diferentes números de moléculas na unidade assimétrica. Foi determinada diferentes regiões de similaridade dentro do fenômeno de polimorfismo, sendo possível determinar as fronteiras entre os polimorfos com caráter quasi-isoestrutural. Um novo índice de similaridade, baseado nos tipos e contribuição normalizada das interações intermoleculares totais de cada cluster (IQ), foi proposto. O IQ indica ser uma ferramenta versátil e aplicável mesmo para sistemas que não compartilham nenhuma similaridade. Além disso, mecanismos de cristalização de novos polimorfos foram propostos. Foi indicado o momento em que os diferentes polimorfos de triazeno (1IA e 1IIA) são formados durante o processo de nucleação. Índices de similaridade também foram aplicados para uma série de bis-feniltriazenos, e mecanismos de cristalização foram propostos para estudar a autoassociação dessa série. As interações de hidrogênio entre os triazenos e o empilhamento está presente em quase todos os exemplos, em algum momento da cristalização. Foi possível avaliar as características únicas de um solvato de piridina e compará-la com a estrutura sem solvente. O IDCG apresentou-se como um índice comparativo robusto para todas as comparações realizadas, levando em consideração as particularidades dos sistemas no valor final. A correlação multilinear indicou alta contribuição do parâmetro energético (43 %) para o valor final do IDCG, seguido do geométrico (31 %) e de área de contato (27 %). Assim, o índice IG se apresenta como parâmetro indispensável na análise de similaridade supramolecular em estruturas cristalinas.Universidade Federal de Santa MariaBrasilQuímicaUFSMPrograma de Pós-Graduação em QuímicaCentro de Ciências Naturais e ExatasMartins, Marcos Antonio Pintohttp://lattes.cnpq.br/6457412713967642Frizzo, Clarissa PiccininBonacorso, Helio GauzeHörner, ManfredoPereira, Claudio Martin Pereira deRocha, Gerd BrunoSalbego, Paulo Roberto dos Santos2023-08-03T16:14:51Z2023-08-03T16:14:51Z2018-06-20info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://repositorio.ufsm.br/handle/1/29840ark:/26339/0013000007pz2porAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessreponame:Manancial - Repositório Digital da UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM2023-08-03T16:14:51Zoai:repositorio.ufsm.br:1/29840Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufsm.br/ONGhttps://repositorio.ufsm.br/oai/requestatendimento.sib@ufsm.br||tedebc@gmail.comopendoar:2023-08-03T16:14:51Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)false
dc.title.none.fl_str_mv Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
Similarity of supramolecular structures in organic crystals: proposal of quantitative indexes
title Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
spellingShingle Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
Salbego, Paulo Roberto dos Santos
Engenharia de cristais
Similaridade supramolecular
Polimorfos
Cristalização
Autoassociação
Solvato
Crystal engineering
Supramolecular similarity
Polymorphs
Crystallization
Self-assembly
Solvate
CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
title_short Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
title_full Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
title_fullStr Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
title_full_unstemmed Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
title_sort Similaridade de estruturas supramoleculares em cristais orgânicos: proposta de índices quantitativos
author Salbego, Paulo Roberto dos Santos
author_facet Salbego, Paulo Roberto dos Santos
author_role author
dc.contributor.none.fl_str_mv Martins, Marcos Antonio Pinto
http://lattes.cnpq.br/6457412713967642
Frizzo, Clarissa Piccinin
Bonacorso, Helio Gauze
Hörner, Manfredo
Pereira, Claudio Martin Pereira de
Rocha, Gerd Bruno
dc.contributor.author.fl_str_mv Salbego, Paulo Roberto dos Santos
dc.subject.por.fl_str_mv Engenharia de cristais
Similaridade supramolecular
Polimorfos
Cristalização
Autoassociação
Solvato
Crystal engineering
Supramolecular similarity
Polymorphs
Crystallization
Self-assembly
Solvate
CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
topic Engenharia de cristais
Similaridade supramolecular
Polimorfos
Cristalização
Autoassociação
Solvato
Crystal engineering
Supramolecular similarity
Polymorphs
Crystallization
Self-assembly
Solvate
CNPQ::CIENCIAS EXATAS E DA TERRA::QUIMICA
description This investigation reports the proposal of a new method to obtain quantitative indexes of similarity in crystals, using the supramolecular cluster as study demarcation. A series of tert-butyl pyrazoles were used as models for the proposal and application of the indexes. The indexes (IX) consider geometric (ID), contact area (IC) and stabilization energy (IG) parameters. In addition, a multiparameter index of similarity (IDCG) was proposed – in which the inheritance of the initial parameters is carried – to aid in the comparison between structures with only one final value. It was observed that the demarcation problem, in relation to the size of the studied system, is one of the problems in studies of supramolecular similarity. It was possible to establish a similarity range for the proposed indexes, where IX ≥ 0.80 (high similarity); 0.80 > IX > 0.60 (intermediate); IX < 0.60 (low), where X = D, C, G or DCG. It was observed that two highly similar systems must have an isostructural, isotopological and isoenergetic behavior. Similarity indexes were applied in a series of polymorphs, with different numbers of molecules in the asymmetric unit. It was determined different regions of similarity within the polymorphism phenomenon, being possible to determine the boundaries between quasi-isostructural polymorphs. A new similarity index – based on the types and normalized contribution of the total intermolecular interactions of each cluster (IQ) – was proposed. The IQ indicates to be a versatile tool and applicable even for systems that do not share any similarity. In addition, mechanisms of crystallization of new polymorphs have been proposed. It was possible to indicate the time in which the different triazene polymorphs (1IA and 1IIA) are formed during the nucleation process. Similarity indexes were also applied for the bisphenyltriazenes, and mechanisms of crystallization were proposed to study the selfassembly of this series. The hydrogen interactions between the triazenes and the stacking are present in almost all examples at some point of crystallization process. It was possible to evaluate the unique characteristics of a pyridine solvate and to compare it with the structure without solvent. The IDCG was presented as a robust comparative index for all the comparisons, taking into account the particularities of the systems in its final value. The multilinear correlation indicated a high contribution of the energy parameter (43%) to the final value of the IDCG, followed by geometric (31%) and contact area (27%) parameters. Therefore, the IG is an indispensable parameter in the analysis of supramolecular similarity of crystalline structures.
publishDate 2018
dc.date.none.fl_str_mv 2018-06-20
2023-08-03T16:14:51Z
2023-08-03T16:14:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.ufsm.br/handle/1/29840
dc.identifier.dark.fl_str_mv ark:/26339/0013000007pz2
url http://repositorio.ufsm.br/handle/1/29840
identifier_str_mv ark:/26339/0013000007pz2
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Química
UFSM
Programa de Pós-Graduação em Química
Centro de Ciências Naturais e Exatas
publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Química
UFSM
Programa de Pós-Graduação em Química
Centro de Ciências Naturais e Exatas
dc.source.none.fl_str_mv reponame:Manancial - Repositório Digital da UFSM
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Manancial - Repositório Digital da UFSM
collection Manancial - Repositório Digital da UFSM
repository.name.fl_str_mv Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
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