Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)

Detalhes bibliográficos
Autor(a) principal: Moraes, Ana Paula [UNIFESP]
Data de Publicação: 2016
Outros Autores: Simoes, Andre Olmos, Alayon, Dario Isidro Ojeda, de Barros, Fabio, Forni-Martins, Eliana Regina
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0165960
https://repositorio.unifesp.br/handle/11600/56720
Resumo: The karyotype is shaped by different chromosome rearrangements during species evolution. However, determining which rearrangements are responsible for karyotype changes is a challenging task and the combination of a robust phylogeny with refined karyotype characterization, GS measurements and bioinformatic modelling is necessary. Here, this approach was applied in Heterotaxis to determine what chromosome rearrangements were responsible for the dysploidy variation. We used two datasets (nrDNA and cpDNA, both under MP and BI) to infer the phylogenetic relationships among Heterotaxis species and the closely related genera Nitidobulbon and Ornithidium. Such phylogenies were used as framework to infer how karyotype evolution occurred using statistical methods. The nrDNA recovered Ornithidium, Nitidobulbon and Heterotaxis as monophyletic under both MP and BI
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spelling Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)The karyotype is shaped by different chromosome rearrangements during species evolution. However, determining which rearrangements are responsible for karyotype changes is a challenging task and the combination of a robust phylogeny with refined karyotype characterization, GS measurements and bioinformatic modelling is necessary. Here, this approach was applied in Heterotaxis to determine what chromosome rearrangements were responsible for the dysploidy variation. We used two datasets (nrDNA and cpDNA, both under MP and BI) to infer the phylogenetic relationships among Heterotaxis species and the closely related genera Nitidobulbon and Ornithidium. Such phylogenies were used as framework to infer how karyotype evolution occurred using statistical methods. The nrDNA recovered Ornithidium, Nitidobulbon and Heterotaxis as monophyletic under both MP and BIwhile cpDNA could not completely separate the three genera under both methods. Based on the GS, we recovered two groups within Heterotaxis: (1) "small GS", corresponding to the Sessilis grade, composed of plants with smaller genomes and smaller morphological structure, and (2) "large GS", corresponding to the Discolor Glade, composed of plants with large genomes and robust morphological structures. The robust karyotype modeling, using both nrDNA phylogenies, allowed us to infer that the ancestral Heterotaxis karyotype presented 2n = 40, probably with a proximal 45S rDNA on a metacentric chromosome pair. The chromosome number variation was caused by ascending dysploidy (chromosome fission involving the proximal 45S rDNA site resulting in two acrocentric chromosome pairs holding a terminal 45S rDNA), with subsequent descending dysploidy (fusion) in two species, H. maleolens and H. sessilis. However, besides dysploidy, our analysis detected another important chromosome rearrangement in the Orchidaceae: chromosome inversion, that promoted 5S rDNA site duplication and relocation.Univ Estadual Campinas UNICAMP, Inst Biol, Dept Biol Vegetal, Campinas, SP, BrazilUniv Estadual Paulista UNESP, Inst Biociencias, Dept Genet, Botucatu, SP, BrazilUniv Fed Sao Paulo UNIFESP, Inst Ciencia & Tecnol, Sao Jose Dos Campos, SP, BrazilUniv British Columbia, Biodivers Res Ctr, Vancouver, BC, CanadaUniv British Columbia, Dept Bot, Vancouver, BC, CanadaInst Bot, Sao Paulo, BrazilInstituto de Ciência e Tecnologia, Universidade Federal de São Paulo/UNIFESP, São José dos Campos, São Paulo, BrasilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)CONACyTConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)FAPESP: 2008/03673-8FAPESP: 2011/22215-3CNPq: 304506/2013-3CNPq: 06142/2011-2Public Library Science2020-07-31T12:47:17Z2020-07-31T12:47:17Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-http://dx.doi.org/10.1371/journal.pone.0165960Plos One. San Francisco, v. 11, n. 11, p. -, 2016.10.1371/journal.pone.0165960WOS000387725000047.pdf1932-6203https://repositorio.unifesp.br/handle/11600/56720WOS:000387725000047engPlos OneSan Franciscoinfo:eu-repo/semantics/openAccessMoraes, Ana Paula [UNIFESP]Simoes, Andre OlmosAlayon, Dario Isidro Ojedade Barros, FabioForni-Martins, Eliana Reginareponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2021-09-29T09:33:33Zoai:repositorio.unifesp.br/:11600/56720Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652021-09-29T09:33:33Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
title Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
spellingShingle Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
Moraes, Ana Paula [UNIFESP]
title_short Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
title_full Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
title_fullStr Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
title_full_unstemmed Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
title_sort Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
author Moraes, Ana Paula [UNIFESP]
author_facet Moraes, Ana Paula [UNIFESP]
Simoes, Andre Olmos
Alayon, Dario Isidro Ojeda
de Barros, Fabio
Forni-Martins, Eliana Regina
author_role author
author2 Simoes, Andre Olmos
Alayon, Dario Isidro Ojeda
de Barros, Fabio
Forni-Martins, Eliana Regina
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Moraes, Ana Paula [UNIFESP]
Simoes, Andre Olmos
Alayon, Dario Isidro Ojeda
de Barros, Fabio
Forni-Martins, Eliana Regina
description The karyotype is shaped by different chromosome rearrangements during species evolution. However, determining which rearrangements are responsible for karyotype changes is a challenging task and the combination of a robust phylogeny with refined karyotype characterization, GS measurements and bioinformatic modelling is necessary. Here, this approach was applied in Heterotaxis to determine what chromosome rearrangements were responsible for the dysploidy variation. We used two datasets (nrDNA and cpDNA, both under MP and BI) to infer the phylogenetic relationships among Heterotaxis species and the closely related genera Nitidobulbon and Ornithidium. Such phylogenies were used as framework to infer how karyotype evolution occurred using statistical methods. The nrDNA recovered Ornithidium, Nitidobulbon and Heterotaxis as monophyletic under both MP and BI
publishDate 2016
dc.date.none.fl_str_mv 2016
2020-07-31T12:47:17Z
2020-07-31T12:47:17Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0165960
Plos One. San Francisco, v. 11, n. 11, p. -, 2016.
10.1371/journal.pone.0165960
WOS000387725000047.pdf
1932-6203
https://repositorio.unifesp.br/handle/11600/56720
WOS:000387725000047
url http://dx.doi.org/10.1371/journal.pone.0165960
https://repositorio.unifesp.br/handle/11600/56720
identifier_str_mv Plos One. San Francisco, v. 11, n. 11, p. -, 2016.
10.1371/journal.pone.0165960
WOS000387725000047.pdf
1932-6203
WOS:000387725000047
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Plos One
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv -
dc.coverage.none.fl_str_mv San Francisco
dc.publisher.none.fl_str_mv Public Library Science
publisher.none.fl_str_mv Public Library Science
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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