Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
Texto Completo: | http://dx.doi.org/10.1371/journal.pone.0165960 https://repositorio.unifesp.br/handle/11600/56720 |
Resumo: | The karyotype is shaped by different chromosome rearrangements during species evolution. However, determining which rearrangements are responsible for karyotype changes is a challenging task and the combination of a robust phylogeny with refined karyotype characterization, GS measurements and bioinformatic modelling is necessary. Here, this approach was applied in Heterotaxis to determine what chromosome rearrangements were responsible for the dysploidy variation. We used two datasets (nrDNA and cpDNA, both under MP and BI) to infer the phylogenetic relationships among Heterotaxis species and the closely related genera Nitidobulbon and Ornithidium. Such phylogenies were used as framework to infer how karyotype evolution occurred using statistical methods. The nrDNA recovered Ornithidium, Nitidobulbon and Heterotaxis as monophyletic under both MP and BI |
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Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)The karyotype is shaped by different chromosome rearrangements during species evolution. However, determining which rearrangements are responsible for karyotype changes is a challenging task and the combination of a robust phylogeny with refined karyotype characterization, GS measurements and bioinformatic modelling is necessary. Here, this approach was applied in Heterotaxis to determine what chromosome rearrangements were responsible for the dysploidy variation. We used two datasets (nrDNA and cpDNA, both under MP and BI) to infer the phylogenetic relationships among Heterotaxis species and the closely related genera Nitidobulbon and Ornithidium. Such phylogenies were used as framework to infer how karyotype evolution occurred using statistical methods. The nrDNA recovered Ornithidium, Nitidobulbon and Heterotaxis as monophyletic under both MP and BIwhile cpDNA could not completely separate the three genera under both methods. Based on the GS, we recovered two groups within Heterotaxis: (1) "small GS", corresponding to the Sessilis grade, composed of plants with smaller genomes and smaller morphological structure, and (2) "large GS", corresponding to the Discolor Glade, composed of plants with large genomes and robust morphological structures. The robust karyotype modeling, using both nrDNA phylogenies, allowed us to infer that the ancestral Heterotaxis karyotype presented 2n = 40, probably with a proximal 45S rDNA on a metacentric chromosome pair. The chromosome number variation was caused by ascending dysploidy (chromosome fission involving the proximal 45S rDNA site resulting in two acrocentric chromosome pairs holding a terminal 45S rDNA), with subsequent descending dysploidy (fusion) in two species, H. maleolens and H. sessilis. However, besides dysploidy, our analysis detected another important chromosome rearrangement in the Orchidaceae: chromosome inversion, that promoted 5S rDNA site duplication and relocation.Univ Estadual Campinas UNICAMP, Inst Biol, Dept Biol Vegetal, Campinas, SP, BrazilUniv Estadual Paulista UNESP, Inst Biociencias, Dept Genet, Botucatu, SP, BrazilUniv Fed Sao Paulo UNIFESP, Inst Ciencia & Tecnol, Sao Jose Dos Campos, SP, BrazilUniv British Columbia, Biodivers Res Ctr, Vancouver, BC, CanadaUniv British Columbia, Dept Bot, Vancouver, BC, CanadaInst Bot, Sao Paulo, BrazilInstituto de Ciência e Tecnologia, Universidade Federal de São Paulo/UNIFESP, São José dos Campos, São Paulo, BrasilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)CONACyTConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)FAPESP: 2008/03673-8FAPESP: 2011/22215-3CNPq: 304506/2013-3CNPq: 06142/2011-2Public Library Science2020-07-31T12:47:17Z2020-07-31T12:47:17Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-http://dx.doi.org/10.1371/journal.pone.0165960Plos One. San Francisco, v. 11, n. 11, p. -, 2016.10.1371/journal.pone.0165960WOS000387725000047.pdf1932-6203https://repositorio.unifesp.br/handle/11600/56720WOS:000387725000047engPlos OneSan Franciscoinfo:eu-repo/semantics/openAccessMoraes, Ana Paula [UNIFESP]Simoes, Andre OlmosAlayon, Dario Isidro Ojedade Barros, FabioForni-Martins, Eliana Reginareponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2021-09-29T09:33:33Zoai:repositorio.unifesp.br/:11600/56720Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652021-09-29T09:33:33Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) |
title |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) |
spellingShingle |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) Moraes, Ana Paula [UNIFESP] |
title_short |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) |
title_full |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) |
title_fullStr |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) |
title_full_unstemmed |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) |
title_sort |
Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae) |
author |
Moraes, Ana Paula [UNIFESP] |
author_facet |
Moraes, Ana Paula [UNIFESP] Simoes, Andre Olmos Alayon, Dario Isidro Ojeda de Barros, Fabio Forni-Martins, Eliana Regina |
author_role |
author |
author2 |
Simoes, Andre Olmos Alayon, Dario Isidro Ojeda de Barros, Fabio Forni-Martins, Eliana Regina |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Moraes, Ana Paula [UNIFESP] Simoes, Andre Olmos Alayon, Dario Isidro Ojeda de Barros, Fabio Forni-Martins, Eliana Regina |
description |
The karyotype is shaped by different chromosome rearrangements during species evolution. However, determining which rearrangements are responsible for karyotype changes is a challenging task and the combination of a robust phylogeny with refined karyotype characterization, GS measurements and bioinformatic modelling is necessary. Here, this approach was applied in Heterotaxis to determine what chromosome rearrangements were responsible for the dysploidy variation. We used two datasets (nrDNA and cpDNA, both under MP and BI) to infer the phylogenetic relationships among Heterotaxis species and the closely related genera Nitidobulbon and Ornithidium. Such phylogenies were used as framework to infer how karyotype evolution occurred using statistical methods. The nrDNA recovered Ornithidium, Nitidobulbon and Heterotaxis as monophyletic under both MP and BI |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016 2020-07-31T12:47:17Z 2020-07-31T12:47:17Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1371/journal.pone.0165960 Plos One. San Francisco, v. 11, n. 11, p. -, 2016. 10.1371/journal.pone.0165960 WOS000387725000047.pdf 1932-6203 https://repositorio.unifesp.br/handle/11600/56720 WOS:000387725000047 |
url |
http://dx.doi.org/10.1371/journal.pone.0165960 https://repositorio.unifesp.br/handle/11600/56720 |
identifier_str_mv |
Plos One. San Francisco, v. 11, n. 11, p. -, 2016. 10.1371/journal.pone.0165960 WOS000387725000047.pdf 1932-6203 WOS:000387725000047 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Plos One |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
- |
dc.coverage.none.fl_str_mv |
San Francisco |
dc.publisher.none.fl_str_mv |
Public Library Science |
publisher.none.fl_str_mv |
Public Library Science |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
reponame_str |
Repositório Institucional da UNIFESP |
collection |
Repositório Institucional da UNIFESP |
repository.name.fl_str_mv |
Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
_version_ |
1814268385654996992 |