Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases

Detalhes bibliográficos
Autor(a) principal: Fellows, Rachel
Data de Publicação: 2018
Outros Autores: Denizot, Jeremy, Stellato, Claudia, Cuomo, Alessandro, Jain, Payal, Stoyanova, Elena, Balazsi, Szabina, Hajnady, Zoltan, Liebert, Anke, Kazakevych, Juri, Blackburn, Hector, Correa, Renan Oliveira, Fachi, Jose Luis, Sato, Fabio Takeo, Ribeiro, Willian R. [UNIFESP], Ferreira, Caroline Marcantonio [UNIFESP], Peree, Helene, Spagnuolo, Mariangela, Mattiuz, Raphael, Matolcsi, Csaba, Guedes, Joana, Clark, Jonathan, Veldhoen, Marc, Bonaldi, Tiziana, Ramirez Vinolo, Marco Aurelio, Varga-Weisz, Patrick
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: http://dx.doi.org/10.1038/s41467-017-02651-5
https://repositorio.unifesp.br/handle/11600/54268
Resumo: The recently discovered histone post-translational modification crotonylation connects cellular metabolism to gene regulation. Its regulation and tissue-specific functions are poorly understood. We characterize histone crotonylation in intestinal epithelia and find that histone H3 crotonylation at lysine 18 is a surprisingly abundant modification in the small intestine crypt and colon, and is linked to gene regulation. We show that this modification is highly dynamic and regulated during the cell cycle. We identify class I histone deacetylases, HDAC1, HDAC2, and HDAC3, as major executors of histone decrotonylation. We show that known HDAC inhibitors, including the gut microbiota-derived butyrate, affect histone decrotonylation. Consistent with this, we find that depletion of the gut microbiota leads to a global change in histone crotonylation in the colon. Our results suggest that histone crotonylation connects chromatin to the gut microbiota, at least in part, via short-chain fatty acids and HDACs.
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spelling Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylasesThe recently discovered histone post-translational modification crotonylation connects cellular metabolism to gene regulation. Its regulation and tissue-specific functions are poorly understood. We characterize histone crotonylation in intestinal epithelia and find that histone H3 crotonylation at lysine 18 is a surprisingly abundant modification in the small intestine crypt and colon, and is linked to gene regulation. We show that this modification is highly dynamic and regulated during the cell cycle. We identify class I histone deacetylases, HDAC1, HDAC2, and HDAC3, as major executors of histone decrotonylation. We show that known HDAC inhibitors, including the gut microbiota-derived butyrate, affect histone decrotonylation. Consistent with this, we find that depletion of the gut microbiota leads to a global change in histone crotonylation in the colon. Our results suggest that histone crotonylation connects chromatin to the gut microbiota, at least in part, via short-chain fatty acids and HDACs.Babraham Inst, Nucl Dynam, Cambridge CB22 3AT, EnglandIst Europeo Oncol, Dept Expt Oncol, I-20139 Milan, ItalyUniv Estadual Campinas, Lab Immunoinflammat, Inst Biol, BR-13083862 Campinas, SP, BrazilUniv Fed Sao Paulo, Dept Pharmaceut Sci, Inst Environm Chem & Pharmaceut Sci, BR-0991303 Diadema, SP, BrazilUniv Fed Sao Paulo, Chem Biol Grad Program, BR-0991303 Diadema, SP, BrazilBabraham Inst, Lymphocyte Signalling & Dev, Cambridge CB22 3AT, EnglandBabraham Inst, Biol Chem, Cambridge CB22 3AT, EnglandUniv Essex, Sch Biol Sci, Colchester CO4 3SQ, Essex, EnglandUniv Clermont Auvergne, Inserm U1071, INRA USC2018, M2iSH, F-63000 Clermont Ferrand, FranceUniv Lisbon, Inst Med Mol, Fac Med, P-1649028 Lisbon, PortugalUniv Fed Sao Paulo, Dept Pharmaceut Sci, Inst Environm Chem & Pharmaceut Sci, BR-0991303 Diadema, SP, BrazilUniv Fed Sao Paulo, Chem Biol Grad Program, BR-0991303 Diadema, SP, BrazilWeb of ScienceUK Biotechnology and Biological Sciences Research Council (BBSRC)UK Medical Research CouncilBrazil-BBSRC Pump-priming awardScience Policy CommitteeBabraham InstituteNC3RFAPESPItalian Association for Cancer Research (AIRC)Italian Ministry of HealthEPIGEN flagship project grantErasmus+ programmeBBSRCUK Medical Research Council: MR/N009398/1Brazil-BBSRC Pump-priming award: BB/N013565/1NC3R: NC/L001217/1FAPESP: 2012/10653-9, 2015/50379-1, 2015/14105-4Italian Ministry of Health: RF-GR2011Nature Publishing Group2020-07-08T13:09:52Z2020-07-08T13:09:52Z2018info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1038/s41467-017-02651-5Nature Communications. London, v. 9, p. -, 2018.10.1038/s41467-017-02651-5WOS000419658100005.pdf2041-1723https://repositorio.unifesp.br/handle/11600/54268WOS:000419658100005engNature CommunicationsLondoninfo:eu-repo/semantics/openAccessFellows, RachelDenizot, JeremyStellato, ClaudiaCuomo, AlessandroJain, PayalStoyanova, ElenaBalazsi, SzabinaHajnady, ZoltanLiebert, AnkeKazakevych, JuriBlackburn, HectorCorrea, Renan OliveiraFachi, Jose LuisSato, Fabio TakeoRibeiro, Willian R. [UNIFESP]Ferreira, Caroline Marcantonio [UNIFESP]Peree, HeleneSpagnuolo, MariangelaMattiuz, RaphaelMatolcsi, CsabaGuedes, JoanaClark, JonathanVeldhoen, MarcBonaldi, TizianaRamirez Vinolo, Marco AurelioVarga-Weisz, Patrickreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-07-30T06:56:36Zoai:repositorio.unifesp.br/:11600/54268Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-07-30T06:56:36Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
title Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
spellingShingle Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
Fellows, Rachel
title_short Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
title_full Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
title_fullStr Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
title_full_unstemmed Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
title_sort Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases
author Fellows, Rachel
author_facet Fellows, Rachel
Denizot, Jeremy
Stellato, Claudia
Cuomo, Alessandro
Jain, Payal
Stoyanova, Elena
Balazsi, Szabina
Hajnady, Zoltan
Liebert, Anke
Kazakevych, Juri
Blackburn, Hector
Correa, Renan Oliveira
Fachi, Jose Luis
Sato, Fabio Takeo
Ribeiro, Willian R. [UNIFESP]
Ferreira, Caroline Marcantonio [UNIFESP]
Peree, Helene
Spagnuolo, Mariangela
Mattiuz, Raphael
Matolcsi, Csaba
Guedes, Joana
Clark, Jonathan
Veldhoen, Marc
Bonaldi, Tiziana
Ramirez Vinolo, Marco Aurelio
Varga-Weisz, Patrick
author_role author
author2 Denizot, Jeremy
Stellato, Claudia
Cuomo, Alessandro
Jain, Payal
Stoyanova, Elena
Balazsi, Szabina
Hajnady, Zoltan
Liebert, Anke
Kazakevych, Juri
Blackburn, Hector
Correa, Renan Oliveira
Fachi, Jose Luis
Sato, Fabio Takeo
Ribeiro, Willian R. [UNIFESP]
Ferreira, Caroline Marcantonio [UNIFESP]
Peree, Helene
Spagnuolo, Mariangela
Mattiuz, Raphael
Matolcsi, Csaba
Guedes, Joana
Clark, Jonathan
Veldhoen, Marc
Bonaldi, Tiziana
Ramirez Vinolo, Marco Aurelio
Varga-Weisz, Patrick
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Fellows, Rachel
Denizot, Jeremy
Stellato, Claudia
Cuomo, Alessandro
Jain, Payal
Stoyanova, Elena
Balazsi, Szabina
Hajnady, Zoltan
Liebert, Anke
Kazakevych, Juri
Blackburn, Hector
Correa, Renan Oliveira
Fachi, Jose Luis
Sato, Fabio Takeo
Ribeiro, Willian R. [UNIFESP]
Ferreira, Caroline Marcantonio [UNIFESP]
Peree, Helene
Spagnuolo, Mariangela
Mattiuz, Raphael
Matolcsi, Csaba
Guedes, Joana
Clark, Jonathan
Veldhoen, Marc
Bonaldi, Tiziana
Ramirez Vinolo, Marco Aurelio
Varga-Weisz, Patrick
description The recently discovered histone post-translational modification crotonylation connects cellular metabolism to gene regulation. Its regulation and tissue-specific functions are poorly understood. We characterize histone crotonylation in intestinal epithelia and find that histone H3 crotonylation at lysine 18 is a surprisingly abundant modification in the small intestine crypt and colon, and is linked to gene regulation. We show that this modification is highly dynamic and regulated during the cell cycle. We identify class I histone deacetylases, HDAC1, HDAC2, and HDAC3, as major executors of histone decrotonylation. We show that known HDAC inhibitors, including the gut microbiota-derived butyrate, affect histone decrotonylation. Consistent with this, we find that depletion of the gut microbiota leads to a global change in histone crotonylation in the colon. Our results suggest that histone crotonylation connects chromatin to the gut microbiota, at least in part, via short-chain fatty acids and HDACs.
publishDate 2018
dc.date.none.fl_str_mv 2018
2020-07-08T13:09:52Z
2020-07-08T13:09:52Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/s41467-017-02651-5
Nature Communications. London, v. 9, p. -, 2018.
10.1038/s41467-017-02651-5
WOS000419658100005.pdf
2041-1723
https://repositorio.unifesp.br/handle/11600/54268
WOS:000419658100005
url http://dx.doi.org/10.1038/s41467-017-02651-5
https://repositorio.unifesp.br/handle/11600/54268
identifier_str_mv Nature Communications. London, v. 9, p. -, 2018.
10.1038/s41467-017-02651-5
WOS000419658100005.pdf
2041-1723
WOS:000419658100005
dc.language.iso.fl_str_mv eng
language eng
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dc.coverage.none.fl_str_mv London
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
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institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
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