Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome

Detalhes bibliográficos
Autor(a) principal: Santos, Ingrid Nayara Marcelino [UNIFESP]
Data de Publicação: 2022
Outros Autores: Kurihara, Mariana Neri Lucas [UNIFESP], Santos, Fernanda Fernandes, Valiatti, Tiago Barcelos [UNIFESP], Silva, Juliana Thalita Paulino [UNIFESP], Pignatari, Antonio Carlos Campos [UNIFESP], Salles, Mauro Jose Costa [UNIFESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: https://doi.org/10.3390/microorganisms10061149
https://repositorio.unifesp.br/xmlui/handle/11600/63955
Resumo: Staphylococcus spp. remain the leading biofilm-forming agents causing orthopedic im-plant-associated infections (OIAI). This is a descriptive study of phenotypic and genomic features identified in clinical isolates of S. aureus and coagulase-negative Staphylococcus (CoNS) recovered from OIAIs patients that progressed to treatment failure. Ten isolates were identified by matrix-time-of-flight laser-assisted desorption mass spectrometry (MALDI-TOF-MS) and tested for antibi-otic susceptibility and biofilm formation. Genotypic characteristics, including, MLST (Multi Locus Sequence Typing), SCCmec typing, virulence and resistance genes were assessed by whole-genome sequencing (WGS). All S. aureus harbored mecA, blaZ, and multiple resistance genes for aminogly-cosides and quinolones. All MRSA were strong biofilm producers harboring the complete icaADBC and icaR operon. Seven CoNS isolates comprising five species (S. epidermidis, S. haemolyticus, S. sci-uri, S. capitis and S. lugdunensis) were analyzed, with mecA gene detected in five isolates. S. haemoli-tycus (isolate 95), and S. lugdunensis were unable to form biofilm and did not harbor the complete icaADBCR operon. High variability of adhesion genes was detected, with atl, ebp, icaADBC operon, and IS256 being the most common. In conclusion, MRSA and CoNS isolates carrying genes for bio-film production, and resistance to β-lactam and aminoglycosides are associated with treatment fail-ure in OIAIs.
id UFSP_d38bf8b22c4a69c3bfb26a8a17415bd8
oai_identifier_str oai:repositorio.unifesp.br:11600/63955
network_acronym_str UFSP
network_name_str Repositório Institucional da UNIFESP
repository_id_str 3465
spelling Santos, Ingrid Nayara Marcelino [UNIFESP]Kurihara, Mariana Neri Lucas [UNIFESP]Santos, Fernanda FernandesValiatti, Tiago Barcelos [UNIFESP]Silva, Juliana Thalita Paulino [UNIFESP]Pignatari, Antonio Carlos Campos [UNIFESP]Salles, Mauro Jose Costa [UNIFESP]http://lattes.cnpq.br/7196518766323325http://lattes.cnpq.br/0214364156717092http://lattes.cnpq.br/6922450552975380http://lattes.cnpq.br/1570873280199853http://lattes.cnpq.br/9461346610553865http://lattes.cnpq.br/31199338645204842022-06-09T17:44:39Z2022-06-09T17:44:39Z2022-06-02https://doi.org/10.3390/microorganisms10061149https://repositorio.unifesp.br/xmlui/handle/11600/6395510.3390/microorganisms10061149Staphylococcus spp. remain the leading biofilm-forming agents causing orthopedic im-plant-associated infections (OIAI). This is a descriptive study of phenotypic and genomic features identified in clinical isolates of S. aureus and coagulase-negative Staphylococcus (CoNS) recovered from OIAIs patients that progressed to treatment failure. Ten isolates were identified by matrix-time-of-flight laser-assisted desorption mass spectrometry (MALDI-TOF-MS) and tested for antibi-otic susceptibility and biofilm formation. Genotypic characteristics, including, MLST (Multi Locus Sequence Typing), SCCmec typing, virulence and resistance genes were assessed by whole-genome sequencing (WGS). All S. aureus harbored mecA, blaZ, and multiple resistance genes for aminogly-cosides and quinolones. All MRSA were strong biofilm producers harboring the complete icaADBC and icaR operon. Seven CoNS isolates comprising five species (S. epidermidis, S. haemolyticus, S. sci-uri, S. capitis and S. lugdunensis) were analyzed, with mecA gene detected in five isolates. S. haemoli-tycus (isolate 95), and S. lugdunensis were unable to form biofilm and did not harbor the complete icaADBCR operon. High variability of adhesion genes was detected, with atl, ebp, icaADBC operon, and IS256 being the most common. In conclusion, MRSA and CoNS isolates carrying genes for bio-film production, and resistance to β-lactam and aminoglycosides are associated with treatment fail-ure in OIAIs.engMDPIMicroorganismsbacterial resistancewhole-genome sequencingStaphylococcus aureuscoagulase-negative StaphylococciBiofilmOrthopedic infectionsSonicationComparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcomeinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESPEscola Paulista de Medicina (EPM)InfectologiaDoenças infecciosas e parasitáriasInfecções Associadas aos BiofilmesMedicinaBiomedicinaORIGINALartigo do mestrado.pdfartigo do mestrado.pdfapplication/pdf596098${dspace.ui.url}/bitstream/11600/63955/1/artigo%20do%20mestrado.pdfe8d8e0d6dda050b48cad1623c262cc9bMD51open accessLICENSElicense.txtlicense.txttext/plain; charset=utf-85901${dspace.ui.url}/bitstream/11600/63955/2/license.txt7114921382a939239051429fc7cda72eMD52open accessTEXTartigo do mestrado.pdf.txtartigo do mestrado.pdf.txtExtracted texttext/plain66153${dspace.ui.url}/bitstream/11600/63955/6/artigo%20do%20mestrado.pdf.txtbd1839753ac8861525d062cd78608324MD56open accessTHUMBNAILartigo do mestrado.pdf.jpgartigo do mestrado.pdf.jpgIM Thumbnailimage/jpeg6692${dspace.ui.url}/bitstream/11600/63955/8/artigo%20do%20mestrado.pdf.jpgef77bae20112937fd73e69c13022c258MD58open access11600/639552023-05-16 01:46:06.19open accessoai:repositorio.unifesp.br:11600/63955VEVSTU9TIEUgQ09OREnDh8OVRVMgUEFSQSBPIExJQ0VOQ0lBTUVOVE8gRE8gQVJRVUlWQU1FTlRPLCBSRVBST0RVw4fDg08gRSBESVZVTEdBw4fDg08gUMOaQkxJQ0EgREUgQ09OVEXDmkRPIE5PIFJFUE9TSVTDk1JJTyBJTlNUSVRVQ0lPTkFMIFVOSUZFU1AKCjEuIEV1LCBJbmdyaWQgU2FudG9zIChpbmdyaWQubWFyY2VsaW5vMThAdW5pZmVzcC5iciksIHJlc3BvbnPDoXZlbCBwZWxvIHRyYWJhbGhvIOKAnENvbXBhcmF0aXZlIFBoZW5vdHlwaWMgYW5kIEdlbm9taWMgRmVhdHVyZXMgb2YgU3RhcGh5bG9jb2NjaSBmcm9tIFNvbmljYXRpb24gRmx1aWQgb2YgT3J0aG9wZWRpYyBJbXBsYW50LUFzc29jaWF0ZWQgSW5mZWN0aW9ucyB3aXRoIFBvb3IgT3V0Y29tZeKAnSBlL291IHVzdcOhcmlvLWRlcG9zaXRhbnRlIG5vIFJlcG9zaXTDs3JpbyBJbnN0aXR1Y2lvbmFsIFVOSUZFU1AsYXNzZWd1cm8gbm8gcHJlc2VudGUgYXRvIHF1ZSBzb3UgdGl0dWxhciBkb3MgZGlyZWl0b3MgYXV0b3JhaXMgcGF0cmltb25pYWlzIGUvb3UgZGlyZWl0b3MgY29uZXhvcyByZWZlcmVudGVzIMOgIHRvdGFsaWRhZGUgZGEgT2JyYSBvcmEgZGVwb3NpdGFkYSBlbSBmb3JtYXRvIGRpZ2l0YWwsIGJlbSBjb21vIGRlIHNldXMgY29tcG9uZW50ZXMgbWVub3JlcywgZW0gc2UgdHJhdGFuZG8gZGUgb2JyYSBjb2xldGl2YSwgY29uZm9ybWUgbyBwcmVjZWl0dWFkbyBwZWxhIExlaSA5LjYxMC85OCBlL291IExlaSA5LjYwOS85OC4gTsOjbyBzZW5kbyBlc3RlIG8gY2FzbywgYXNzZWd1cm8gdGVyIG9idGlkbyBkaXJldGFtZW50ZSBkb3MgZGV2aWRvcyB0aXR1bGFyZXMgYXV0b3JpemHDp8OjbyBwcsOpdmlhIGUgZXhwcmVzc2EgcGFyYSBvIGRlcMOzc2l0byBlIHBhcmEgYSBkaXZ1bGdhw6fDo28gZGEgT2JyYSwgYWJyYW5nZW5kbyB0b2RvcyBvcyBkaXJlaXRvcyBhdXRvcmFpcyBlIGNvbmV4b3MgYWZldGFkb3MgcGVsYSBhc3NpbmF0dXJhIGRvIHByZXNlbnRlIHRlcm1vIGRlIGxpY2VuY2lhbWVudG8sIGRlIG1vZG8gYSBlZmV0aXZhbWVudGUgaXNlbnRhciBhIFVuaXZlcnNpZGFkZSBGZWRlcmFsIGRlIFPDo28gUGF1bG8gKFVOSUZFU1ApIGUgc2V1cyBmdW5jaW9uw6FyaW9zIGRlIHF1YWxxdWVyIHJlc3BvbnNhYmlsaWRhZGUgcGVsbyB1c28gbsOjby1hdXRvcml6YWRvIGRvIG1hdGVyaWFsIGRlcG9zaXRhZG8sIHNlamEgZW0gdmluY3VsYcOnw6NvIGFvIFJlcG9zaXTDs3JpbyBJbnN0aXR1Y2lvbmFsIFVOSUZFU1AsIHNlamEgZW0gdmluY3VsYcOnw6NvIGEgcXVhaXNxdWVyIHNlcnZpw6dvcyBkZSBidXNjYSBlIGRlIGRpc3RyaWJ1acOnw6NvIGRlIGNvbnRlw7pkbyBxdWUgZmHDp2FtIHVzbyBkYXMgaW50ZXJmYWNlcyBlIGVzcGHDp28gZGUgYXJtYXplbmFtZW50byBwcm92aWRlbmNpYWRvcyBwZWxhIFVuaXZlcnNpZGFkZSBGZWRlcmFsIGRlIFPDo28gUGF1bG8gKFVOSUZFU1ApIHBvciBtZWlvIGRlIHNldXMgc2lzdGVtYXMgaW5mb3JtYXRpemFkb3MuCgoyLiBBIGNvbmNvcmTDom5jaWEgY29tIGVzdGEgbGljZW7Dp2EgdGVtIGNvbW8gY29uc2VxdcOqbmNpYSBhIHRyYW5zZmVyw6puY2lhLCBhIHTDrXR1bG8gbsOjby1leGNsdXNpdm8gZSBuw6NvLW9uZXJvc28sIGlzZW50YSBkbyBwYWdhbWVudG8gZGUgcm95YWx0aWVzIG91IHF1YWxxdWVyIG91dHJhIGNvbnRyYXByZXN0YcOnw6NvLCBwZWN1bmnDoXJpYSBvdSBuw6NvLCDDoCBVbml2ZXJzaWRhZGUgRmVkZXJhbCBkZSBTw6NvIFBhdWxvIChVTklGRVNQKSBkb3MgZGlyZWl0b3MgZGUgYXJtYXplbmFyIGRpZ2l0YWxtZW50ZSwgZGUgcmVwcm9kdXppciBlIGRlIGRpc3RyaWJ1aXIgbmFjaW9uYWwgZSBpbnRlcm5hY2lvbmFsbWVudGUgYSBPYnJhLCBpbmNsdWluZG8tc2UgbyBzZXUgcmVzdW1vL2Fic3RyYWN0LCBwb3IgbWVpb3MgZWxldHLDtG5pY29zIGFvIHDDumJsaWNvIGVtIGdlcmFsLCBlbSByZWdpbWUgZGUgYWNlc3NvIGFiZXJ0by4KCjMuIEEgcHJlc2VudGUgbGljZW7Dp2EgdGFtYsOpbSBhYnJhbmdlLCBub3MgbWVzbW9zIHRlcm1vcyBlc3RhYmVsZWNpZG9zIG5vIGl0ZW0gMiwgc3VwcmEsIHF1YWxxdWVyIGRpcmVpdG8gZGUgY29tdW5pY2HDp8OjbyBhbyBww7pibGljbyBjYWLDrXZlbCBlbSByZWxhw6fDo28gw6AgT2JyYSBvcmEgZGVwb3NpdGFkYSwgaW5jbHVpbmRvLXNlIG9zIHVzb3MgcmVmZXJlbnRlcyDDoCByZXByZXNlbnRhw6fDo28gcMO6YmxpY2EgZS9vdSBleGVjdcOnw6NvIHDDumJsaWNhLCBiZW0gY29tbyBxdWFscXVlciBvdXRyYSBtb2RhbGlkYWRlIGRlIGNvbXVuaWNhw6fDo28gYW8gcMO6YmxpY28gcXVlIGV4aXN0YSBvdSB2ZW5oYSBhIGV4aXN0aXIsIG5vcyB0ZXJtb3MgZG8gYXJ0aWdvIDY4IGUgc2VndWludGVzIGRhIExlaSA5LjYxMC85OCwgbmEgZXh0ZW5zw6NvIHF1ZSBmb3IgYXBsaWPDoXZlbCBhb3Mgc2VydmnDp29zIHByZXN0YWRvcyBhbyBww7pibGljbyBwZWxhIFVuaXZlcnNpZGFkZSBGZWRlcmFsIGRlIFPDo28gUGF1bG8gKFVOSUZFU1ApLgoKNC4gRXN0YSBsaWNlbsOnYSBhYnJhbmdlLCBhaW5kYSwgbm9zIG1lc21vcyB0ZXJtb3MgZXN0YWJlbGVjaWRvcyBubyBpdGVtIDIsIHN1cHJhLCB0b2RvcyBvcyBkaXJlaXRvcyBjb25leG9zIGRlIGFydGlzdGFzIGludMOpcnByZXRlcyBvdSBleGVjdXRhbnRlcywgcHJvZHV0b3JlcyBmb25vZ3LDoWZpY29zIG91IGVtcHJlc2FzIGRlIHJhZGlvZGlmdXPDo28gcXVlIGV2ZW50dWFsbWVudGUgc2VqYW0gYXBsaWPDoXZlaXMgZW0gcmVsYcOnw6NvIMOgIG9icmEgZGVwb3NpdGFkYSwgZW0gY29uZm9ybWlkYWRlIGNvbSBvIHJlZ2ltZSBmaXhhZG8gbm8gVMOtdHVsbyBWIGRhIExlaSA5LjYxMC85OC4KCjUuIFNlIGEgT2JyYSBkZXBvc2l0YWRhIGZvaSBvdSDDqSBvYmpldG8gZGUgZmluYW5jaWFtZW50byBwb3IgaW5zdGl0dWnDp8O1ZXMgZGUgZm9tZW50byDDoCBwZXNxdWlzYSBvdSBxdWFscXVlciBvdXRyYSBzZW1lbGhhbnRlLCB2b2PDqiBvdSBvIHRpdHVsYXIgYXNzZWd1cmEgcXVlIGN1bXByaXUgdG9kYXMgYXMgb2JyaWdhw6fDtWVzIHF1ZSBsaGUgZm9yYW0gaW1wb3N0YXMgcGVsYSBpbnN0aXR1acOnw6NvIGZpbmFuY2lhZG9yYSBlbSByYXrDo28gZG8gZmluYW5jaWFtZW50bywgZSBxdWUgbsOjbyBlc3TDoSBjb250cmFyaWFuZG8gcXVhbHF1ZXIgZGlzcG9zacOnw6NvIGNvbnRyYXR1YWwgcmVmZXJlbnRlIMOgIHB1YmxpY2HDp8OjbyBkbyBjb250ZcO6ZG8gb3JhIHN1Ym1ldGlkbyBhbyBSZXBvc2l0w7NyaW8gSW5zdGl0dWNpb25hbCBVTklGRVNQLgogCjYuIEF1dG9yaXphIGEgVW5pdmVyc2lkYWRlIEZlZGVyYWwgZGUgU8OjbyBQYXVsbyBhIGRpc3BvbmliaWxpemFyIGEgb2JyYSBubyBSZXBvc2l0w7NyaW8gSW5zdGl0dWNpb25hbCBVTklGRVNQIGRlIGZvcm1hIGdyYXR1aXRhLCBkZSBhY29yZG8gY29tIGEgbGljZW7Dp2EgcMO6YmxpY2EgQ3JlYXRpdmUgQ29tbW9uczogQXRyaWJ1acOnw6NvLVNlbSBEZXJpdmHDp8O1ZXMtU2VtIERlcml2YWRvcyA0LjAgSW50ZXJuYWNpb25hbCAoQ0MgQlktTkMtTkQpLCBwZXJtaXRpbmRvIHNldSBsaXZyZSBhY2Vzc28sIHVzbyBlIGNvbXBhcnRpbGhhbWVudG8sIGRlc2RlIHF1ZSBjaXRhZGEgYSBmb250ZS4gQSBvYnJhIGNvbnRpbnVhIHByb3RlZ2lkYSBwb3IgRGlyZWl0b3MgQXV0b3JhaXMgZS9vdSBwb3Igb3V0cmFzIGxlaXMgYXBsaWPDoXZlaXMuIFF1YWxxdWVyIHVzbyBkYSBvYnJhLCBxdWUgbsOjbyBvIGF1dG9yaXphZG8gc29iIGVzdGEgbGljZW7Dp2Egb3UgcGVsYSBsZWdpc2xhw6fDo28gYXV0b3JhbCwgw6kgcHJvaWJpZG8uICAKCjcuIEF0ZXN0YSBxdWUgYSBPYnJhIHN1Ym1ldGlkYSBuw6NvIGNvbnTDqW0gcXVhbHF1ZXIgaW5mb3JtYcOnw6NvIGNvbmZpZGVuY2lhbCBzdWEgb3UgZGUgdGVyY2Vpcm9zLgoKOC4gQXRlc3RhIHF1ZSBvIHRyYWJhbGhvIHN1Ym1ldGlkbyDDqSBvcmlnaW5hbCBlIGZvaSBlbGFib3JhZG8gcmVzcGVpdGFuZG8gb3MgcHJpbmPDrXBpb3MgZGEgbW9yYWwgZSBkYSDDqXRpY2EgZSBuw6NvIHZpb2xvdSBxdWFscXVlciBkaXJlaXRvIGRlIHByb3ByaWVkYWRlIGludGVsZWN0dWFsLCBzb2IgcGVuYSBkZSByZXNwb25kZXIgY2l2aWwsIGNyaW1pbmFsLCDDqXRpY2EgZSBwcm9maXNzaW9uYWxtZW50ZSBwb3IgbWV1cyBhdG9zOwoKOS4gQXRlc3RhIHF1ZSBhIHZlcnPDo28gZG8gdHJhYmFsaG8gcHJlc2VudGUgbm8gYXJxdWl2byBzdWJtZXRpZG8gw6kgYSB2ZXJzw6NvIGRlZmluaXRpdmEgcXVlIGluY2x1aSBhcyBhbHRlcmHDp8O1ZXMgZGVjb3JyZW50ZXMgZGEgZGVmZXNhLCBzb2xpY2l0YWRhcyBwZWxhIGJhbmNhLCBzZSBob3V2ZSBhbGd1bWEsIG91IHNvbGljaXRhZGFzIHBvciBwYXJ0ZSBkZSBvcmllbnRhw6fDo28gZG9jZW50ZSByZXNwb25zw6F2ZWw7CgoxMC4gQ29uY2VkZSDDoCBVbml2ZXJzaWRhZGUgRmVkZXJhbCBkZSBTw6NvIFBhdWxvIChVTklGRVNQKSBvIGRpcmVpdG8gbsOjbyBleGNsdXNpdm8gZGUgcmVhbGl6YXIgcXVhaXNxdWVyIGFsdGVyYcOnw7VlcyBuYSBtw61kaWEgb3Ugbm8gZm9ybWF0byBkbyBhcnF1aXZvIHBhcmEgcHJvcMOzc2l0b3MgZGUgcHJlc2VydmHDp8OjbyBkaWdpdGFsLCBkZSBhY2Vzc2liaWxpZGFkZSBlIGRlIG1lbGhvciBpZGVudGlmaWNhw6fDo28gZG8gdHJhYmFsaG8gc3VibWV0aWRvLCBkZXNkZSBxdWUgbsOjbyBzZWphIGFsdGVyYWRvIHNldSBjb250ZcO6ZG8gaW50ZWxlY3R1YWwuCgpBbyBjb25jbHVpciBhcyBldGFwYXMgZG8gcHJvY2Vzc28gZGUgc3VibWlzc8OjbyBkZSBhcnF1aXZvcyBubyBSZXBvc2l0w7NyaW8gSW5zdGl0dWNpb25hbCBVTklGRVNQLCBhdGVzdG8gcXVlIGxpIGUgY29uY29yZGVpIGludGVncmFsbWVudGUgY29tIG9zIHRlcm1vcyBhY2ltYSBkZWxpbWl0YWRvcywgc2VtIGZhemVyIHF1YWxxdWVyIHJlc2VydmEgZSBub3ZhbWVudGUgY29uZmlybWFuZG8gcXVlIGN1bXBybyBvcyByZXF1aXNpdG9zIGluZGljYWRvcyBub3MgaXRlbnMgbWVuY2lvbmFkb3MgYW50ZXJpb3JtZW50ZS4KCkhhdmVuZG8gcXVhbHF1ZXIgZGlzY29yZMOibmNpYSBlbSByZWxhw6fDo28gYSBwcmVzZW50ZSBsaWNlbsOnYSBvdSBuw6NvIHNlIHZlcmlmaWNhbmRvIG8gZXhpZ2lkbyBub3MgaXRlbnMgYW50ZXJpb3Jlcywgdm9jw6ogZGV2ZSBpbnRlcnJvbXBlciBpbWVkaWF0YW1lbnRlIG8gcHJvY2Vzc28gZGUgc3VibWlzc8Ojby4gQSBjb250aW51aWRhZGUgZG8gcHJvY2Vzc28gZXF1aXZhbGUgw6AgY29uY29yZMOibmNpYSBlIMOgIGFzc2luYXR1cmEgZGVzdGUgZG9jdW1lbnRvLCBjb20gdG9kYXMgYXMgY29uc2VxdcOqbmNpYXMgbmVsZSBwcmV2aXN0YXMsIHN1amVpdGFuZG8tc2UgbyBzaWduYXTDoXJpbyBhIHNhbsOnw7VlcyBjaXZpcyBlIGNyaW1pbmFpcyBjYXNvIG7Do28gc2VqYSB0aXR1bGFyIGRvcyBkaXJlaXRvcyBhdXRvcmFpcyBwYXRyaW1vbmlhaXMgZS9vdSBjb25leG9zIGFwbGljw6F2ZWlzIMOgIE9icmEgZGVwb3NpdGFkYSBkdXJhbnRlIGVzdGUgcHJvY2Vzc28sIG91IGNhc28gbsOjbyB0ZW5oYSBvYnRpZG8gcHLDqXZpYSBlIGV4cHJlc3NhIGF1dG9yaXphw6fDo28gZG8gdGl0dWxhciBwYXJhIG8gZGVww7NzaXRvIGUgdG9kb3Mgb3MgdXNvcyBkYSBPYnJhIGVudm9sdmlkb3MuCgpTZSB0aXZlciBxdWFscXVlciBkw7p2aWRhIHF1YW50byBhb3MgdGVybW9zIGRlIGxpY2VuY2lhbWVudG8gZSBxdWFudG8gYW8gcHJvY2Vzc28gZGUgc3VibWlzc8OjbywgZW50cmUgZW0gY29udGF0byBjb20gYSBiaWJsaW90ZWNhIGRvIHNldSBjYW1wdXMgKGNvbnN1bHRlIGVtOiBodHRwczovL2JpYmxpb3RlY2FzLnVuaWZlc3AuYnIvYmlibGlvdGVjYXMtZGEtcmVkZSkuIAoKU8OjbyBQYXVsbywgV2VkIEp1biAwOCAxNzowMzo0MCBVVEMgMjAyMi4KRepositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestopendoar:34652023-05-16T04:46:06Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.en.fl_str_mv Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
title Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
spellingShingle Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
Santos, Ingrid Nayara Marcelino [UNIFESP]
bacterial resistance
whole-genome sequencing
Staphylococcus aureus
coagulase-negative Staphylococci
Biofilm
Orthopedic infections
Sonication
title_short Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
title_full Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
title_fullStr Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
title_full_unstemmed Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
title_sort Comparative phenotypic and genomic features of Staphylococci from sonication fluid of orthopedic implant-associated infections with poor outcome
author Santos, Ingrid Nayara Marcelino [UNIFESP]
author_facet Santos, Ingrid Nayara Marcelino [UNIFESP]
Kurihara, Mariana Neri Lucas [UNIFESP]
Santos, Fernanda Fernandes
Valiatti, Tiago Barcelos [UNIFESP]
Silva, Juliana Thalita Paulino [UNIFESP]
Pignatari, Antonio Carlos Campos [UNIFESP]
Salles, Mauro Jose Costa [UNIFESP]
author_role author
author2 Kurihara, Mariana Neri Lucas [UNIFESP]
Santos, Fernanda Fernandes
Valiatti, Tiago Barcelos [UNIFESP]
Silva, Juliana Thalita Paulino [UNIFESP]
Pignatari, Antonio Carlos Campos [UNIFESP]
Salles, Mauro Jose Costa [UNIFESP]
author2_role author
author
author
author
author
author
dc.contributor.authorLattes.pt_BR.fl_str_mv http://lattes.cnpq.br/7196518766323325
dc.contributor.authorLattes.none.fl_str_mv http://lattes.cnpq.br/0214364156717092
http://lattes.cnpq.br/6922450552975380
http://lattes.cnpq.br/1570873280199853
http://lattes.cnpq.br/9461346610553865
http://lattes.cnpq.br/3119933864520484
dc.contributor.author.fl_str_mv Santos, Ingrid Nayara Marcelino [UNIFESP]
Kurihara, Mariana Neri Lucas [UNIFESP]
Santos, Fernanda Fernandes
Valiatti, Tiago Barcelos [UNIFESP]
Silva, Juliana Thalita Paulino [UNIFESP]
Pignatari, Antonio Carlos Campos [UNIFESP]
Salles, Mauro Jose Costa [UNIFESP]
dc.subject.por.fl_str_mv bacterial resistance
whole-genome sequencing
topic bacterial resistance
whole-genome sequencing
Staphylococcus aureus
coagulase-negative Staphylococci
Biofilm
Orthopedic infections
Sonication
dc.subject.eng.fl_str_mv Staphylococcus aureus
coagulase-negative Staphylococci
Biofilm
Orthopedic infections
Sonication
description Staphylococcus spp. remain the leading biofilm-forming agents causing orthopedic im-plant-associated infections (OIAI). This is a descriptive study of phenotypic and genomic features identified in clinical isolates of S. aureus and coagulase-negative Staphylococcus (CoNS) recovered from OIAIs patients that progressed to treatment failure. Ten isolates were identified by matrix-time-of-flight laser-assisted desorption mass spectrometry (MALDI-TOF-MS) and tested for antibi-otic susceptibility and biofilm formation. Genotypic characteristics, including, MLST (Multi Locus Sequence Typing), SCCmec typing, virulence and resistance genes were assessed by whole-genome sequencing (WGS). All S. aureus harbored mecA, blaZ, and multiple resistance genes for aminogly-cosides and quinolones. All MRSA were strong biofilm producers harboring the complete icaADBC and icaR operon. Seven CoNS isolates comprising five species (S. epidermidis, S. haemolyticus, S. sci-uri, S. capitis and S. lugdunensis) were analyzed, with mecA gene detected in five isolates. S. haemoli-tycus (isolate 95), and S. lugdunensis were unable to form biofilm and did not harbor the complete icaADBCR operon. High variability of adhesion genes was detected, with atl, ebp, icaADBC operon, and IS256 being the most common. In conclusion, MRSA and CoNS isolates carrying genes for bio-film production, and resistance to β-lactam and aminoglycosides are associated with treatment fail-ure in OIAIs.
publishDate 2022
dc.date.accessioned.fl_str_mv 2022-06-09T17:44:39Z
dc.date.available.fl_str_mv 2022-06-09T17:44:39Z
dc.date.issued.fl_str_mv 2022-06-02
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.pt_BR.fl_str_mv https://doi.org/10.3390/microorganisms10061149
dc.identifier.uri.fl_str_mv https://repositorio.unifesp.br/xmlui/handle/11600/63955
dc.identifier.doi.pt_BR.fl_str_mv 10.3390/microorganisms10061149
url https://doi.org/10.3390/microorganisms10061149
https://repositorio.unifesp.br/xmlui/handle/11600/63955
identifier_str_mv 10.3390/microorganisms10061149
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.en.fl_str_mv Microorganisms
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
bitstream.url.fl_str_mv ${dspace.ui.url}/bitstream/11600/63955/1/artigo%20do%20mestrado.pdf
${dspace.ui.url}/bitstream/11600/63955/2/license.txt
${dspace.ui.url}/bitstream/11600/63955/6/artigo%20do%20mestrado.pdf.txt
${dspace.ui.url}/bitstream/11600/63955/8/artigo%20do%20mestrado.pdf.jpg
bitstream.checksum.fl_str_mv e8d8e0d6dda050b48cad1623c262cc9b
7114921382a939239051429fc7cda72e
bd1839753ac8861525d062cd78608324
ef77bae20112937fd73e69c13022c258
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv
_version_ 1802764259077128192