Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
Texto Completo: | http://dx.doi.org/10.1038/srep38915 https://repositorio.unifesp.br/handle/11600/56552 |
Resumo: | Composting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomicand metatranscriptomic-based analyses of a large composting operation in the Sao Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 degrees C to 75 degrees C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the process |
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Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomicsComposting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomicand metatranscriptomic-based analyses of a large composting operation in the Sao Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 degrees C to 75 degrees C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the processand that lignocellulosic biomass deconstruction occurs synergistically and sequentially, with hemicellulose being degraded preferentially to cellulose and lignin. Moreover, our sequencing data allowed near-complete genome reconstruction of five bacterial species previously found in biomass-degrading environments and of a novel biodegrading bacterial species, likely a new genus in the order Bacillales. The data and analyses provided are a rich source for additional investigations of thermophilic composting microbiology.Univ Sao Paulo, Inst Quim, Dept Bioquim, Sao Paulo, BrazilUniv Sao Paulo, Programa Pos Graduacao Interunidades Bioinformat, Sao Paulo, BrazilUniv Sao Paulo, Escola Artes Ciencias & Humanidades, Sao Paulo, Brazil|Fundacao Parque Zool Sao Paulo, Sao Paulo, BrazilUniv Fed Sao Paulo, Dept Ciencias Biol, Sao Paulo, BrazilBiocomplex Inst Virginia, Blacksburg, VA USADepartamento de Ciências Biológicas, Universidade Federal de São Paulo, São Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Provost's Office for Research of the University of Sao PauloCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)FAPESP: 2011/50870-6Nature Publishing Group2020-07-31T12:47:03Z2020-07-31T12:47:03Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1038/srep38915Scientific Reports. London, v. 6, p. -, 2016.10.1038/srep38915WOS000389691100001.pdf2045-2322https://repositorio.unifesp.br/handle/11600/56552WOS:000389691100001engScientific ReportsLondoninfo:eu-repo/semantics/openAccessAntunes, Luciana PrincipalMartins, Layla FaragePereira, Roberta VercianoThomas, Andrew MaltezBarbosa, DeibsLemos, Leandro NascimentoMachado Silva, Gianluca MajorSilva Moura, Livia MariaCondomitti Epamino, George WillianDigiampietri, Luciano AntonioLombardi, Karen CristinaRamos, Patricia LocosqueQuaggio, Ronaldo BentoOliveira, Julio Cezar Franco de [UNIFESP]Pascon, Renata Castiglioni [UNIFESP]da Cruz, Joao Batistada Silva, Aline MariaSetubal, Joao Carlosreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-11T12:15:20Zoai:repositorio.unifesp.br/:11600/56552Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-11T12:15:20Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics |
title |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics |
spellingShingle |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics Antunes, Luciana Principal |
title_short |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics |
title_full |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics |
title_fullStr |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics |
title_full_unstemmed |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics |
title_sort |
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics |
author |
Antunes, Luciana Principal |
author_facet |
Antunes, Luciana Principal Martins, Layla Farage Pereira, Roberta Verciano Thomas, Andrew Maltez Barbosa, Deibs Lemos, Leandro Nascimento Machado Silva, Gianluca Major Silva Moura, Livia Maria Condomitti Epamino, George Willian Digiampietri, Luciano Antonio Lombardi, Karen Cristina Ramos, Patricia Locosque Quaggio, Ronaldo Bento Oliveira, Julio Cezar Franco de [UNIFESP] Pascon, Renata Castiglioni [UNIFESP] da Cruz, Joao Batista da Silva, Aline Maria Setubal, Joao Carlos |
author_role |
author |
author2 |
Martins, Layla Farage Pereira, Roberta Verciano Thomas, Andrew Maltez Barbosa, Deibs Lemos, Leandro Nascimento Machado Silva, Gianluca Major Silva Moura, Livia Maria Condomitti Epamino, George Willian Digiampietri, Luciano Antonio Lombardi, Karen Cristina Ramos, Patricia Locosque Quaggio, Ronaldo Bento Oliveira, Julio Cezar Franco de [UNIFESP] Pascon, Renata Castiglioni [UNIFESP] da Cruz, Joao Batista da Silva, Aline Maria Setubal, Joao Carlos |
author2_role |
author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Antunes, Luciana Principal Martins, Layla Farage Pereira, Roberta Verciano Thomas, Andrew Maltez Barbosa, Deibs Lemos, Leandro Nascimento Machado Silva, Gianluca Major Silva Moura, Livia Maria Condomitti Epamino, George Willian Digiampietri, Luciano Antonio Lombardi, Karen Cristina Ramos, Patricia Locosque Quaggio, Ronaldo Bento Oliveira, Julio Cezar Franco de [UNIFESP] Pascon, Renata Castiglioni [UNIFESP] da Cruz, Joao Batista da Silva, Aline Maria Setubal, Joao Carlos |
description |
Composting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomicand metatranscriptomic-based analyses of a large composting operation in the Sao Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 degrees C to 75 degrees C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the process |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016 2020-07-31T12:47:03Z 2020-07-31T12:47:03Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1038/srep38915 Scientific Reports. London, v. 6, p. -, 2016. 10.1038/srep38915 WOS000389691100001.pdf 2045-2322 https://repositorio.unifesp.br/handle/11600/56552 WOS:000389691100001 |
url |
http://dx.doi.org/10.1038/srep38915 https://repositorio.unifesp.br/handle/11600/56552 |
identifier_str_mv |
Scientific Reports. London, v. 6, p. -, 2016. 10.1038/srep38915 WOS000389691100001.pdf 2045-2322 WOS:000389691100001 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Scientific Reports |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
- application/pdf |
dc.coverage.none.fl_str_mv |
London |
dc.publisher.none.fl_str_mv |
Nature Publishing Group |
publisher.none.fl_str_mv |
Nature Publishing Group |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
reponame_str |
Repositório Institucional da UNIFESP |
collection |
Repositório Institucional da UNIFESP |
repository.name.fl_str_mv |
Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
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1814268362019045376 |