Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics

Detalhes bibliográficos
Autor(a) principal: Antunes, Luciana Principal
Data de Publicação: 2016
Outros Autores: Martins, Layla Farage, Pereira, Roberta Verciano, Thomas, Andrew Maltez, Barbosa, Deibs, Lemos, Leandro Nascimento, Machado Silva, Gianluca Major, Silva Moura, Livia Maria, Condomitti Epamino, George Willian, Digiampietri, Luciano Antonio, Lombardi, Karen Cristina, Ramos, Patricia Locosque, Quaggio, Ronaldo Bento, Oliveira, Julio Cezar Franco de [UNIFESP], Pascon, Renata Castiglioni [UNIFESP], da Cruz, Joao Batista, da Silva, Aline Maria, Setubal, Joao Carlos
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: http://dx.doi.org/10.1038/srep38915
https://repositorio.unifesp.br/handle/11600/56552
Resumo: Composting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomicand metatranscriptomic-based analyses of a large composting operation in the Sao Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 degrees C to 75 degrees C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the process
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spelling Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomicsComposting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomicand metatranscriptomic-based analyses of a large composting operation in the Sao Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 degrees C to 75 degrees C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the processand that lignocellulosic biomass deconstruction occurs synergistically and sequentially, with hemicellulose being degraded preferentially to cellulose and lignin. Moreover, our sequencing data allowed near-complete genome reconstruction of five bacterial species previously found in biomass-degrading environments and of a novel biodegrading bacterial species, likely a new genus in the order Bacillales. The data and analyses provided are a rich source for additional investigations of thermophilic composting microbiology.Univ Sao Paulo, Inst Quim, Dept Bioquim, Sao Paulo, BrazilUniv Sao Paulo, Programa Pos Graduacao Interunidades Bioinformat, Sao Paulo, BrazilUniv Sao Paulo, Escola Artes Ciencias & Humanidades, Sao Paulo, Brazil|Fundacao Parque Zool Sao Paulo, Sao Paulo, BrazilUniv Fed Sao Paulo, Dept Ciencias Biol, Sao Paulo, BrazilBiocomplex Inst Virginia, Blacksburg, VA USADepartamento de Ciências Biológicas, Universidade Federal de São Paulo, São Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Provost's Office for Research of the University of Sao PauloCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)FAPESP: 2011/50870-6Nature Publishing Group2020-07-31T12:47:03Z2020-07-31T12:47:03Z2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion-application/pdfhttp://dx.doi.org/10.1038/srep38915Scientific Reports. London, v. 6, p. -, 2016.10.1038/srep38915WOS000389691100001.pdf2045-2322https://repositorio.unifesp.br/handle/11600/56552WOS:000389691100001engScientific ReportsLondoninfo:eu-repo/semantics/openAccessAntunes, Luciana PrincipalMartins, Layla FaragePereira, Roberta VercianoThomas, Andrew MaltezBarbosa, DeibsLemos, Leandro NascimentoMachado Silva, Gianluca MajorSilva Moura, Livia MariaCondomitti Epamino, George WillianDigiampietri, Luciano AntonioLombardi, Karen CristinaRamos, Patricia LocosqueQuaggio, Ronaldo BentoOliveira, Julio Cezar Franco de [UNIFESP]Pascon, Renata Castiglioni [UNIFESP]da Cruz, Joao Batistada Silva, Aline MariaSetubal, Joao Carlosreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-08-11T12:15:20Zoai:repositorio.unifesp.br/:11600/56552Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-08-11T12:15:20Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
title Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
spellingShingle Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
Antunes, Luciana Principal
title_short Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
title_full Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
title_fullStr Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
title_full_unstemmed Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
title_sort Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
author Antunes, Luciana Principal
author_facet Antunes, Luciana Principal
Martins, Layla Farage
Pereira, Roberta Verciano
Thomas, Andrew Maltez
Barbosa, Deibs
Lemos, Leandro Nascimento
Machado Silva, Gianluca Major
Silva Moura, Livia Maria
Condomitti Epamino, George Willian
Digiampietri, Luciano Antonio
Lombardi, Karen Cristina
Ramos, Patricia Locosque
Quaggio, Ronaldo Bento
Oliveira, Julio Cezar Franco de [UNIFESP]
Pascon, Renata Castiglioni [UNIFESP]
da Cruz, Joao Batista
da Silva, Aline Maria
Setubal, Joao Carlos
author_role author
author2 Martins, Layla Farage
Pereira, Roberta Verciano
Thomas, Andrew Maltez
Barbosa, Deibs
Lemos, Leandro Nascimento
Machado Silva, Gianluca Major
Silva Moura, Livia Maria
Condomitti Epamino, George Willian
Digiampietri, Luciano Antonio
Lombardi, Karen Cristina
Ramos, Patricia Locosque
Quaggio, Ronaldo Bento
Oliveira, Julio Cezar Franco de [UNIFESP]
Pascon, Renata Castiglioni [UNIFESP]
da Cruz, Joao Batista
da Silva, Aline Maria
Setubal, Joao Carlos
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Antunes, Luciana Principal
Martins, Layla Farage
Pereira, Roberta Verciano
Thomas, Andrew Maltez
Barbosa, Deibs
Lemos, Leandro Nascimento
Machado Silva, Gianluca Major
Silva Moura, Livia Maria
Condomitti Epamino, George Willian
Digiampietri, Luciano Antonio
Lombardi, Karen Cristina
Ramos, Patricia Locosque
Quaggio, Ronaldo Bento
Oliveira, Julio Cezar Franco de [UNIFESP]
Pascon, Renata Castiglioni [UNIFESP]
da Cruz, Joao Batista
da Silva, Aline Maria
Setubal, Joao Carlos
description Composting is a promising source of new organisms and thermostable enzymes that may be helpful in environmental management and industrial processes. Here we present results of metagenomicand metatranscriptomic-based analyses of a large composting operation in the Sao Paulo Zoo Park. This composting exhibits a sustained thermophilic profile (50 degrees C to 75 degrees C), which seems to preclude fungal activity. The main novelty of our study is the combination of time-series sampling with shotgun DNA, 16S rRNA gene amplicon, and metatranscriptome high-throughput sequencing, enabling an unprecedented detailed view of microbial community structure, dynamics, and function in this ecosystem. The time-series data showed that the turning procedure has a strong impact on the compost microbiota, restoring to a certain extent the population profile seen at the beginning of the process
publishDate 2016
dc.date.none.fl_str_mv 2016
2020-07-31T12:47:03Z
2020-07-31T12:47:03Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/srep38915
Scientific Reports. London, v. 6, p. -, 2016.
10.1038/srep38915
WOS000389691100001.pdf
2045-2322
https://repositorio.unifesp.br/handle/11600/56552
WOS:000389691100001
url http://dx.doi.org/10.1038/srep38915
https://repositorio.unifesp.br/handle/11600/56552
identifier_str_mv Scientific Reports. London, v. 6, p. -, 2016.
10.1038/srep38915
WOS000389691100001.pdf
2045-2322
WOS:000389691100001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Reports
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv -
application/pdf
dc.coverage.none.fl_str_mv London
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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