Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics

Detalhes bibliográficos
Autor(a) principal: Guima, Suzana Eiko Sato
Data de Publicação: 2021
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Biblioteca Digital de Teses e Dissertações da USP
Texto Completo: https://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/
Resumo: Composting piles consist in a thermophilic environment that can contain bacteria and enzymes potentially related to lignocellulosic deconstruction. Inoculum is the composting material in advanced stage added to the organic matter to be decomposed, while mature compost is the final product of composting product ready to be used as fertilizer. Here, we present results of 16S rRNA profile and metagenome-assembled genomes (MAGs) analysis from inoculum and mature compost samples collected from a composting facility at the São Paulo Zoo Park. We were able to recover 17 MAGs from inoculum samples and 16 MAGs from mature compost samples. Variation in abundance over time shows that these MAGs are likely present during the whole composting process, even if they are present in low abundance. Groups of MAGs can contribute to the lignocellulosic deconstruction in different stages of composting. Genes encoding cellulases, endohemicellulases, and oligosaccharide-degrading enzymes were distributed in MAGs from both inoculum and mature compost samples. Auxiliary activity enzymes were found especially in MAGs recovered from mature compost samples. Mature compost material can contain bacteria that play an important role to the lignin degradation, and as such they can be potential candidates for lignocellulose degradation biotechnological processes.
id USP_901799ad9252d43194de01ad7b685c68
oai_identifier_str oai:teses.usp.br:tde-16022021-122522
network_acronym_str USP
network_name_str Biblioteca Digital de Teses e Dissertações da USP
repository_id_str 2721
spelling Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomicsComposição microbiana de inóculo e do composto maduro no processo de compostagem do Zoológico de São Paulo avaliada por meio de metagenômica16S rRNADegradaçãoDegradationGenomas montados a partir de metagenomasLignocelluloseLignocelluloseMAGsMAGsMetagenome-assembled genomesrRNA 16SComposting piles consist in a thermophilic environment that can contain bacteria and enzymes potentially related to lignocellulosic deconstruction. Inoculum is the composting material in advanced stage added to the organic matter to be decomposed, while mature compost is the final product of composting product ready to be used as fertilizer. Here, we present results of 16S rRNA profile and metagenome-assembled genomes (MAGs) analysis from inoculum and mature compost samples collected from a composting facility at the São Paulo Zoo Park. We were able to recover 17 MAGs from inoculum samples and 16 MAGs from mature compost samples. Variation in abundance over time shows that these MAGs are likely present during the whole composting process, even if they are present in low abundance. Groups of MAGs can contribute to the lignocellulosic deconstruction in different stages of composting. Genes encoding cellulases, endohemicellulases, and oligosaccharide-degrading enzymes were distributed in MAGs from both inoculum and mature compost samples. Auxiliary activity enzymes were found especially in MAGs recovered from mature compost samples. Mature compost material can contain bacteria that play an important role to the lignin degradation, and as such they can be potential candidates for lignocellulose degradation biotechnological processes.As pilhas de compostagem consistem em um ambiente termofílico que pode conter bactérias e enzimas potencialmente relacionadas à desconstrução lignocelulósica. O inóculo é o material de compostagem em estágio avançado adicionado à matéria orgânica a ser decomposta, enquanto o composto maduro é o produto final da compostagem pronto para ser utilizado como fertilizante. Aqui, apresentamos os resultados da análise do perfil de rRNA 16S e dos genomas montados a partir do metagenoma (MAGs) de amostras de inóculo e composto maduro coletadas de uma instalação de compostagem no Parque Zoológico de São Paulo. Recuperamos 17 MAGs das amostras de inóculo e 16 MAGs das amostras de composto maduro. A variação na abundância ao longo do tempo mostra que esses MAGs provavelmente estão presentes durante todo o processo de compostagem, mesmo que estejam presentes em baixa abundância. Grupos de MAGs podem contribuir para a desconstrução lignocelulósica em diferentes estágios da compostagem. Os genes que codificam celuloses, endohemicelulases e enzimas de degradação de oligossacarídeos estavam distribuídos nos MAGs das amostras de inóculo e de composto maduro. Enzimas da classe de atividades auxiliares foram encontradas especialmente em MAGs recuperados de amostras de composto maduro. O composto maduro pode conter bactérias que desempenham um papel importante na degradação da lignina e, assim, podem ser candidatos potenciais para processos biotecnológicos de degradação da lignocelulose.Biblioteca Digitais de Teses e Dissertações da USPSetubal, João CarlosSilva, Aline Maria daGuima, Suzana Eiko Sato2021-01-19info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2021-02-17T01:50:02Zoai:teses.usp.br:tde-16022021-122522Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212021-02-17T01:50:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
Composição microbiana de inóculo e do composto maduro no processo de compostagem do Zoológico de São Paulo avaliada por meio de metagenômica
title Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
spellingShingle Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
Guima, Suzana Eiko Sato
16S rRNA
Degradação
Degradation
Genomas montados a partir de metagenomas
Lignocellulose
Lignocellulose
MAGs
MAGs
Metagenome-assembled genomes
rRNA 16S
title_short Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
title_full Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
title_fullStr Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
title_full_unstemmed Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
title_sort Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
author Guima, Suzana Eiko Sato
author_facet Guima, Suzana Eiko Sato
author_role author
dc.contributor.none.fl_str_mv Setubal, João Carlos
Silva, Aline Maria da
dc.contributor.author.fl_str_mv Guima, Suzana Eiko Sato
dc.subject.por.fl_str_mv 16S rRNA
Degradação
Degradation
Genomas montados a partir de metagenomas
Lignocellulose
Lignocellulose
MAGs
MAGs
Metagenome-assembled genomes
rRNA 16S
topic 16S rRNA
Degradação
Degradation
Genomas montados a partir de metagenomas
Lignocellulose
Lignocellulose
MAGs
MAGs
Metagenome-assembled genomes
rRNA 16S
description Composting piles consist in a thermophilic environment that can contain bacteria and enzymes potentially related to lignocellulosic deconstruction. Inoculum is the composting material in advanced stage added to the organic matter to be decomposed, while mature compost is the final product of composting product ready to be used as fertilizer. Here, we present results of 16S rRNA profile and metagenome-assembled genomes (MAGs) analysis from inoculum and mature compost samples collected from a composting facility at the São Paulo Zoo Park. We were able to recover 17 MAGs from inoculum samples and 16 MAGs from mature compost samples. Variation in abundance over time shows that these MAGs are likely present during the whole composting process, even if they are present in low abundance. Groups of MAGs can contribute to the lignocellulosic deconstruction in different stages of composting. Genes encoding cellulases, endohemicellulases, and oligosaccharide-degrading enzymes were distributed in MAGs from both inoculum and mature compost samples. Auxiliary activity enzymes were found especially in MAGs recovered from mature compost samples. Mature compost material can contain bacteria that play an important role to the lignin degradation, and as such they can be potential candidates for lignocellulose degradation biotechnological processes.
publishDate 2021
dc.date.none.fl_str_mv 2021-01-19
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/
url https://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv
dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
dc.source.none.fl_str_mv
reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Biblioteca Digital de Teses e Dissertações da USP
collection Biblioteca Digital de Teses e Dissertações da USP
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
repository.mail.fl_str_mv virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br
_version_ 1815257013858336768