Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Tipo de documento: | Dissertação |
Idioma: | eng |
Título da fonte: | Biblioteca Digital de Teses e Dissertações da USP |
Texto Completo: | https://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/ |
Resumo: | Composting piles consist in a thermophilic environment that can contain bacteria and enzymes potentially related to lignocellulosic deconstruction. Inoculum is the composting material in advanced stage added to the organic matter to be decomposed, while mature compost is the final product of composting product ready to be used as fertilizer. Here, we present results of 16S rRNA profile and metagenome-assembled genomes (MAGs) analysis from inoculum and mature compost samples collected from a composting facility at the São Paulo Zoo Park. We were able to recover 17 MAGs from inoculum samples and 16 MAGs from mature compost samples. Variation in abundance over time shows that these MAGs are likely present during the whole composting process, even if they are present in low abundance. Groups of MAGs can contribute to the lignocellulosic deconstruction in different stages of composting. Genes encoding cellulases, endohemicellulases, and oligosaccharide-degrading enzymes were distributed in MAGs from both inoculum and mature compost samples. Auxiliary activity enzymes were found especially in MAGs recovered from mature compost samples. Mature compost material can contain bacteria that play an important role to the lignin degradation, and as such they can be potential candidates for lignocellulose degradation biotechnological processes. |
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Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomicsComposição microbiana de inóculo e do composto maduro no processo de compostagem do Zoológico de São Paulo avaliada por meio de metagenômica16S rRNADegradaçãoDegradationGenomas montados a partir de metagenomasLignocelluloseLignocelluloseMAGsMAGsMetagenome-assembled genomesrRNA 16SComposting piles consist in a thermophilic environment that can contain bacteria and enzymes potentially related to lignocellulosic deconstruction. Inoculum is the composting material in advanced stage added to the organic matter to be decomposed, while mature compost is the final product of composting product ready to be used as fertilizer. Here, we present results of 16S rRNA profile and metagenome-assembled genomes (MAGs) analysis from inoculum and mature compost samples collected from a composting facility at the São Paulo Zoo Park. We were able to recover 17 MAGs from inoculum samples and 16 MAGs from mature compost samples. Variation in abundance over time shows that these MAGs are likely present during the whole composting process, even if they are present in low abundance. Groups of MAGs can contribute to the lignocellulosic deconstruction in different stages of composting. Genes encoding cellulases, endohemicellulases, and oligosaccharide-degrading enzymes were distributed in MAGs from both inoculum and mature compost samples. Auxiliary activity enzymes were found especially in MAGs recovered from mature compost samples. Mature compost material can contain bacteria that play an important role to the lignin degradation, and as such they can be potential candidates for lignocellulose degradation biotechnological processes.As pilhas de compostagem consistem em um ambiente termofílico que pode conter bactérias e enzimas potencialmente relacionadas à desconstrução lignocelulósica. O inóculo é o material de compostagem em estágio avançado adicionado à matéria orgânica a ser decomposta, enquanto o composto maduro é o produto final da compostagem pronto para ser utilizado como fertilizante. Aqui, apresentamos os resultados da análise do perfil de rRNA 16S e dos genomas montados a partir do metagenoma (MAGs) de amostras de inóculo e composto maduro coletadas de uma instalação de compostagem no Parque Zoológico de São Paulo. Recuperamos 17 MAGs das amostras de inóculo e 16 MAGs das amostras de composto maduro. A variação na abundância ao longo do tempo mostra que esses MAGs provavelmente estão presentes durante todo o processo de compostagem, mesmo que estejam presentes em baixa abundância. Grupos de MAGs podem contribuir para a desconstrução lignocelulósica em diferentes estágios da compostagem. Os genes que codificam celuloses, endohemicelulases e enzimas de degradação de oligossacarídeos estavam distribuídos nos MAGs das amostras de inóculo e de composto maduro. Enzimas da classe de atividades auxiliares foram encontradas especialmente em MAGs recuperados de amostras de composto maduro. O composto maduro pode conter bactérias que desempenham um papel importante na degradação da lignina e, assim, podem ser candidatos potenciais para processos biotecnológicos de degradação da lignocelulose.Biblioteca Digitais de Teses e Dissertações da USPSetubal, João CarlosSilva, Aline Maria daGuima, Suzana Eiko Sato2021-01-19info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2021-02-17T01:50:02Zoai:teses.usp.br:tde-16022021-122522Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212021-02-17T01:50:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false |
dc.title.none.fl_str_mv |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics Composição microbiana de inóculo e do composto maduro no processo de compostagem do Zoológico de São Paulo avaliada por meio de metagenômica |
title |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics |
spellingShingle |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics Guima, Suzana Eiko Sato 16S rRNA Degradação Degradation Genomas montados a partir de metagenomas Lignocellulose Lignocellulose MAGs MAGs Metagenome-assembled genomes rRNA 16S |
title_short |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics |
title_full |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics |
title_fullStr |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics |
title_full_unstemmed |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics |
title_sort |
Microbial composition of inoculum and mature compost in the São Paulo Zoo composting process assessed through metagenomics |
author |
Guima, Suzana Eiko Sato |
author_facet |
Guima, Suzana Eiko Sato |
author_role |
author |
dc.contributor.none.fl_str_mv |
Setubal, João Carlos Silva, Aline Maria da |
dc.contributor.author.fl_str_mv |
Guima, Suzana Eiko Sato |
dc.subject.por.fl_str_mv |
16S rRNA Degradação Degradation Genomas montados a partir de metagenomas Lignocellulose Lignocellulose MAGs MAGs Metagenome-assembled genomes rRNA 16S |
topic |
16S rRNA Degradação Degradation Genomas montados a partir de metagenomas Lignocellulose Lignocellulose MAGs MAGs Metagenome-assembled genomes rRNA 16S |
description |
Composting piles consist in a thermophilic environment that can contain bacteria and enzymes potentially related to lignocellulosic deconstruction. Inoculum is the composting material in advanced stage added to the organic matter to be decomposed, while mature compost is the final product of composting product ready to be used as fertilizer. Here, we present results of 16S rRNA profile and metagenome-assembled genomes (MAGs) analysis from inoculum and mature compost samples collected from a composting facility at the São Paulo Zoo Park. We were able to recover 17 MAGs from inoculum samples and 16 MAGs from mature compost samples. Variation in abundance over time shows that these MAGs are likely present during the whole composting process, even if they are present in low abundance. Groups of MAGs can contribute to the lignocellulosic deconstruction in different stages of composting. Genes encoding cellulases, endohemicellulases, and oligosaccharide-degrading enzymes were distributed in MAGs from both inoculum and mature compost samples. Auxiliary activity enzymes were found especially in MAGs recovered from mature compost samples. Mature compost material can contain bacteria that play an important role to the lignin degradation, and as such they can be potential candidates for lignocellulose degradation biotechnological processes. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-01-19 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/ |
url |
https://www.teses.usp.br/teses/disponiveis/95/95131/tde-16022021-122522/ |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
|
dc.rights.driver.fl_str_mv |
Liberar o conteúdo para acesso público. info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Liberar o conteúdo para acesso público. |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.coverage.none.fl_str_mv |
|
dc.publisher.none.fl_str_mv |
Biblioteca Digitais de Teses e Dissertações da USP |
publisher.none.fl_str_mv |
Biblioteca Digitais de Teses e Dissertações da USP |
dc.source.none.fl_str_mv |
reponame:Biblioteca Digital de Teses e Dissertações da USP instname:Universidade de São Paulo (USP) instacron:USP |
instname_str |
Universidade de São Paulo (USP) |
instacron_str |
USP |
institution |
USP |
reponame_str |
Biblioteca Digital de Teses e Dissertações da USP |
collection |
Biblioteca Digital de Teses e Dissertações da USP |
repository.name.fl_str_mv |
Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP) |
repository.mail.fl_str_mv |
virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br |
_version_ |
1815257013858336768 |