Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family

Detalhes bibliográficos
Autor(a) principal: Motta, Maria Cristina Machado
Data de Publicação: 2013
Outros Autores: Azevedo Martins, Allan Cezar de, Souza, Silvana Sant'Anna de, Costa Catta-Preta, Carolina Moura, Silva, Rosane, Klein, Cecilia Coimbra, Paula de Almeida, Luiz Gonzaga, Cunha, Oberdan de Lima, Ciapina, Luciane Prioli, Brocchi, Marcelo, Colabardini, Ana Cristina, Lima, Bruna de Araujo, Machado, Carlos Renato, Almeida Soares, Celia Maria de, Probst, Christian Macagnan, Afonso de Menezes, Claudia Beatriz, Thompson, Claudia Elizabeth, Bartholomeu, Daniella Castanheira, Gradia, Daniela Fiori, Pavoni, Daniela Parada, Grisard, Edmundo C., Fantinatti-Garboggini, Fabiana, Marchini, Fabricio Klerynton, Rodrigues-Luiz, Gabriela Flaia, Wagner, Glauber, Goldman, Gustavo Henrique, Rangel Fietto, Juliana Lopes, Elias, Maria Carolina, Goldman, Maria Helena S., Sagot, Marie-France, Pereira, Maristela, Stoco, Patricia H., Mendonca-Neto, Rondon Pessoa de, Ribeiro Teixeira, Santuza Maria, Ferreira Maciel, Talles Eduardo, Oliveira Mendes, Tiago Antonio de, Uermenyi, Turan P., Souza, Wanderley de, Schenkman, Sergio [UNIFESP], Ribeiro de Vasconcelos, Ana Tereza
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNIFESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0060209
http://repositorio.unifesp.br/handle/11600/36195
Resumo: Endosymbiont-bearing trypanosomatids have been considered excellent models for the study of cell evolution because the host protozoan co-evolves with an intracellular bacterium in a mutualistic relationship. Such protozoa inhabit a single invertebrate host during their entire life cycle and exhibit special characteristics that group them in a particular phylogenetic cluster of the Trypanosomatidae family, thus classified as monoxenics. in an effort to better understand such symbiotic association, we used DNA pyrosequencing and a reference-guided assembly to generate reads that predicted 16,960 and 12,162 open reading frames (ORFs) in two symbiont-bearing trypanosomatids, Angomonas deanei (previously named as Crithidia deanei) and Strigomonas culicis (first known as Blastocrithidia culicis), respectively. Identification of each ORF was based primarily on TriTrypDB using tblastn, and each ORF was confirmed by employing getorf from EMBOSS and Newbler 2.6 when necessary. the monoxenic organisms revealed conserved housekeeping functions when compared to other trypanosomatids, especially compared with Leishmania major. However, major differences were found in ORFs corresponding to the cytoskeleton, the kinetoplast, and the paraflagellar structure. the monoxenic organisms also contain a large number of genes for cytosolic calpain-like and surface gp63 metalloproteases and a reduced number of compartmentalized cysteine proteases in comparison to other TriTryp organisms, reflecting adaptations to the presence of the symbiont. the assembled bacterial endosymbiont sequences exhibit a high A+T content with a total of 787 and 769 ORFs for the Angomonas deanei and Strigomonas culicis endosymbionts, respectively, and indicate that these organisms hold a common ancestor related to the Alcaligenaceae family. Importantly, both symbionts contain enzymes that complement essential host cell biosynthetic pathways, such as those for amino acid, lipid and purine/pyrimidine metabolism. These findings increase our understanding of the intricate symbiotic relationship between the bacterium and the trypanosomatid host and provide clues to better understand eukaryotic cell evolution.
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spelling Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae FamilyEndosymbiont-bearing trypanosomatids have been considered excellent models for the study of cell evolution because the host protozoan co-evolves with an intracellular bacterium in a mutualistic relationship. Such protozoa inhabit a single invertebrate host during their entire life cycle and exhibit special characteristics that group them in a particular phylogenetic cluster of the Trypanosomatidae family, thus classified as monoxenics. in an effort to better understand such symbiotic association, we used DNA pyrosequencing and a reference-guided assembly to generate reads that predicted 16,960 and 12,162 open reading frames (ORFs) in two symbiont-bearing trypanosomatids, Angomonas deanei (previously named as Crithidia deanei) and Strigomonas culicis (first known as Blastocrithidia culicis), respectively. Identification of each ORF was based primarily on TriTrypDB using tblastn, and each ORF was confirmed by employing getorf from EMBOSS and Newbler 2.6 when necessary. the monoxenic organisms revealed conserved housekeeping functions when compared to other trypanosomatids, especially compared with Leishmania major. However, major differences were found in ORFs corresponding to the cytoskeleton, the kinetoplast, and the paraflagellar structure. the monoxenic organisms also contain a large number of genes for cytosolic calpain-like and surface gp63 metalloproteases and a reduced number of compartmentalized cysteine proteases in comparison to other TriTryp organisms, reflecting adaptations to the presence of the symbiont. the assembled bacterial endosymbiont sequences exhibit a high A+T content with a total of 787 and 769 ORFs for the Angomonas deanei and Strigomonas culicis endosymbionts, respectively, and indicate that these organisms hold a common ancestor related to the Alcaligenaceae family. Importantly, both symbionts contain enzymes that complement essential host cell biosynthetic pathways, such as those for amino acid, lipid and purine/pyrimidine metabolism. These findings increase our understanding of the intricate symbiotic relationship between the bacterium and the trypanosomatid host and provide clues to better understand eukaryotic cell evolution.Univ Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Lab Ultraestrutura Celular Hertha Meyer, BR-21941 Rio de Janeiro, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Lab Metab Macromol Firmino Torres de Castro, BR-21941 Rio de Janeiro, BrazilLab Bioinformat, Lab Nacl Computacao Cient, Rio de Janeiro, BrazilINRIA Grenoble Rhone Alpes, BAMBOO Team, Villeurbanne, FranceUniv Lyon 1, CNRS, UMR5558, Lab Biometrie & Biol Evolut, F-69622 Villeurbanne, FranceUniv Estadual Campinas, Inst Biol, Dept Genet Evolucao & Bioagentes, São Paulo, BrazilUniv São Paulo, Fac Ciencias Farmaceut Ribeirao Preto, Dept Ciencias Farmaceut, São Paulo, BrazilLab Nacl Ciencia & Tecnol Bioetano, São Paulo, BrazilUniv Fed Minas Gerais, Inst Ciencias Biol, Dept Bioquim & Imunol, Belo Horizonte, MG, BrazilUniv Fed Goias, Inst Ciencias Biol, Mol Biol Lab, Goiania, Go, BrazilFundacao Oswaldo Cruz, Inst Carlos Chagas, Lab Biol Mol Tripanossomatideos, Curitiba, Parana, BrazilFundacao Oswaldo Cruz, Inst Carlos Chagas, Lab Genom Func, Curitiba, Parana, BrazilUniv Estadual Campinas, Ctr Pluridisciplinar Pesquisas Quim Biol & Agr, São Paulo, BrazilUniv Fed Minas Gerais, Inst Ciencias Biol, Dept Parasitol, Belo Horizonte, MG, BrazilUniv Fed Santa Catarina, Dept Microbiol Imunol & Parasitol, Ctr Ciencias Biol, Lab Protozool & Bioinformat, Florianopolis, SC, BrazilUniv Fed Vicosa, Dept Bioquim & Biol Mol, Ctr Ciencias Biol & Saude, Vicosa, MG, BrazilInst Butantan, Lab Especial Ciclo Celular, São Paulo, BrazilUniv São Paulo, Dept Biol, Fac Filosofia Ciencias & Letras Ribeirao Preto, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Microbiol Imunol & Parasitol, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Microbiol Imunol & Parasitol, São Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)ERC AdG SISYPHEPublic Library ScienceUniversidade Federal do Rio de Janeiro (UFRJ)Lab BioinformatINRIA Grenoble Rhone AlpesUniv Lyon 1Universidade Estadual de Campinas (UNICAMP)Universidade de São Paulo (USP)Lab Nacl Ciencia & Tecnol BioetanoUniversidade Federal de Minas Gerais (UFMG)Universidade Federal de Goiás (UFG)Fundacao Oswaldo CruzUniversidade Federal de Santa Catarina (UFSC)Universidade Federal de Viçosa (UFV)Inst ButantanUniversidade Federal de São Paulo (UNIFESP)Motta, Maria Cristina MachadoAzevedo Martins, Allan Cezar deSouza, Silvana Sant'Anna deCosta Catta-Preta, Carolina MouraSilva, RosaneKlein, Cecilia CoimbraPaula de Almeida, Luiz GonzagaCunha, Oberdan de LimaCiapina, Luciane PrioliBrocchi, MarceloColabardini, Ana CristinaLima, Bruna de AraujoMachado, Carlos RenatoAlmeida Soares, Celia Maria deProbst, Christian MacagnanAfonso de Menezes, Claudia BeatrizThompson, Claudia ElizabethBartholomeu, Daniella CastanheiraGradia, Daniela FioriPavoni, Daniela ParadaGrisard, Edmundo C.Fantinatti-Garboggini, FabianaMarchini, Fabricio KleryntonRodrigues-Luiz, Gabriela FlaiaWagner, GlauberGoldman, Gustavo HenriqueRangel Fietto, Juliana LopesElias, Maria CarolinaGoldman, Maria Helena S.Sagot, Marie-FrancePereira, MaristelaStoco, Patricia H.Mendonca-Neto, Rondon Pessoa deRibeiro Teixeira, Santuza MariaFerreira Maciel, Talles EduardoOliveira Mendes, Tiago Antonio deUermenyi, Turan P.Souza, Wanderley deSchenkman, Sergio [UNIFESP]Ribeiro de Vasconcelos, Ana Tereza2016-01-24T14:31:34Z2016-01-24T14:31:34Z2013-04-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion20application/pdfhttp://dx.doi.org/10.1371/journal.pone.0060209Plos One. San Francisco: Public Library Science, v. 8, n. 4, 20 p., 2013.10.1371/journal.pone.0060209WOS000318840100054.pdf1932-6203http://repositorio.unifesp.br/handle/11600/36195WOS:000318840100054engPlos Oneinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-07-30T08:28:38Zoai:repositorio.unifesp.br/:11600/36195Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-07-30T08:28:38Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false
dc.title.none.fl_str_mv Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
title Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
spellingShingle Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
Motta, Maria Cristina Machado
title_short Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
title_full Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
title_fullStr Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
title_full_unstemmed Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
title_sort Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
author Motta, Maria Cristina Machado
author_facet Motta, Maria Cristina Machado
Azevedo Martins, Allan Cezar de
Souza, Silvana Sant'Anna de
Costa Catta-Preta, Carolina Moura
Silva, Rosane
Klein, Cecilia Coimbra
Paula de Almeida, Luiz Gonzaga
Cunha, Oberdan de Lima
Ciapina, Luciane Prioli
Brocchi, Marcelo
Colabardini, Ana Cristina
Lima, Bruna de Araujo
Machado, Carlos Renato
Almeida Soares, Celia Maria de
Probst, Christian Macagnan
Afonso de Menezes, Claudia Beatriz
Thompson, Claudia Elizabeth
Bartholomeu, Daniella Castanheira
Gradia, Daniela Fiori
Pavoni, Daniela Parada
Grisard, Edmundo C.
Fantinatti-Garboggini, Fabiana
Marchini, Fabricio Klerynton
Rodrigues-Luiz, Gabriela Flaia
Wagner, Glauber
Goldman, Gustavo Henrique
Rangel Fietto, Juliana Lopes
Elias, Maria Carolina
Goldman, Maria Helena S.
Sagot, Marie-France
Pereira, Maristela
Stoco, Patricia H.
Mendonca-Neto, Rondon Pessoa de
Ribeiro Teixeira, Santuza Maria
Ferreira Maciel, Talles Eduardo
Oliveira Mendes, Tiago Antonio de
Uermenyi, Turan P.
Souza, Wanderley de
Schenkman, Sergio [UNIFESP]
Ribeiro de Vasconcelos, Ana Tereza
author_role author
author2 Azevedo Martins, Allan Cezar de
Souza, Silvana Sant'Anna de
Costa Catta-Preta, Carolina Moura
Silva, Rosane
Klein, Cecilia Coimbra
Paula de Almeida, Luiz Gonzaga
Cunha, Oberdan de Lima
Ciapina, Luciane Prioli
Brocchi, Marcelo
Colabardini, Ana Cristina
Lima, Bruna de Araujo
Machado, Carlos Renato
Almeida Soares, Celia Maria de
Probst, Christian Macagnan
Afonso de Menezes, Claudia Beatriz
Thompson, Claudia Elizabeth
Bartholomeu, Daniella Castanheira
Gradia, Daniela Fiori
Pavoni, Daniela Parada
Grisard, Edmundo C.
Fantinatti-Garboggini, Fabiana
Marchini, Fabricio Klerynton
Rodrigues-Luiz, Gabriela Flaia
Wagner, Glauber
Goldman, Gustavo Henrique
Rangel Fietto, Juliana Lopes
Elias, Maria Carolina
Goldman, Maria Helena S.
Sagot, Marie-France
Pereira, Maristela
Stoco, Patricia H.
Mendonca-Neto, Rondon Pessoa de
Ribeiro Teixeira, Santuza Maria
Ferreira Maciel, Talles Eduardo
Oliveira Mendes, Tiago Antonio de
Uermenyi, Turan P.
Souza, Wanderley de
Schenkman, Sergio [UNIFESP]
Ribeiro de Vasconcelos, Ana Tereza
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do Rio de Janeiro (UFRJ)
Lab Bioinformat
INRIA Grenoble Rhone Alpes
Univ Lyon 1
Universidade Estadual de Campinas (UNICAMP)
Universidade de São Paulo (USP)
Lab Nacl Ciencia & Tecnol Bioetano
Universidade Federal de Minas Gerais (UFMG)
Universidade Federal de Goiás (UFG)
Fundacao Oswaldo Cruz
Universidade Federal de Santa Catarina (UFSC)
Universidade Federal de Viçosa (UFV)
Inst Butantan
Universidade Federal de São Paulo (UNIFESP)
dc.contributor.author.fl_str_mv Motta, Maria Cristina Machado
Azevedo Martins, Allan Cezar de
Souza, Silvana Sant'Anna de
Costa Catta-Preta, Carolina Moura
Silva, Rosane
Klein, Cecilia Coimbra
Paula de Almeida, Luiz Gonzaga
Cunha, Oberdan de Lima
Ciapina, Luciane Prioli
Brocchi, Marcelo
Colabardini, Ana Cristina
Lima, Bruna de Araujo
Machado, Carlos Renato
Almeida Soares, Celia Maria de
Probst, Christian Macagnan
Afonso de Menezes, Claudia Beatriz
Thompson, Claudia Elizabeth
Bartholomeu, Daniella Castanheira
Gradia, Daniela Fiori
Pavoni, Daniela Parada
Grisard, Edmundo C.
Fantinatti-Garboggini, Fabiana
Marchini, Fabricio Klerynton
Rodrigues-Luiz, Gabriela Flaia
Wagner, Glauber
Goldman, Gustavo Henrique
Rangel Fietto, Juliana Lopes
Elias, Maria Carolina
Goldman, Maria Helena S.
Sagot, Marie-France
Pereira, Maristela
Stoco, Patricia H.
Mendonca-Neto, Rondon Pessoa de
Ribeiro Teixeira, Santuza Maria
Ferreira Maciel, Talles Eduardo
Oliveira Mendes, Tiago Antonio de
Uermenyi, Turan P.
Souza, Wanderley de
Schenkman, Sergio [UNIFESP]
Ribeiro de Vasconcelos, Ana Tereza
description Endosymbiont-bearing trypanosomatids have been considered excellent models for the study of cell evolution because the host protozoan co-evolves with an intracellular bacterium in a mutualistic relationship. Such protozoa inhabit a single invertebrate host during their entire life cycle and exhibit special characteristics that group them in a particular phylogenetic cluster of the Trypanosomatidae family, thus classified as monoxenics. in an effort to better understand such symbiotic association, we used DNA pyrosequencing and a reference-guided assembly to generate reads that predicted 16,960 and 12,162 open reading frames (ORFs) in two symbiont-bearing trypanosomatids, Angomonas deanei (previously named as Crithidia deanei) and Strigomonas culicis (first known as Blastocrithidia culicis), respectively. Identification of each ORF was based primarily on TriTrypDB using tblastn, and each ORF was confirmed by employing getorf from EMBOSS and Newbler 2.6 when necessary. the monoxenic organisms revealed conserved housekeeping functions when compared to other trypanosomatids, especially compared with Leishmania major. However, major differences were found in ORFs corresponding to the cytoskeleton, the kinetoplast, and the paraflagellar structure. the monoxenic organisms also contain a large number of genes for cytosolic calpain-like and surface gp63 metalloproteases and a reduced number of compartmentalized cysteine proteases in comparison to other TriTryp organisms, reflecting adaptations to the presence of the symbiont. the assembled bacterial endosymbiont sequences exhibit a high A+T content with a total of 787 and 769 ORFs for the Angomonas deanei and Strigomonas culicis endosymbionts, respectively, and indicate that these organisms hold a common ancestor related to the Alcaligenaceae family. Importantly, both symbionts contain enzymes that complement essential host cell biosynthetic pathways, such as those for amino acid, lipid and purine/pyrimidine metabolism. These findings increase our understanding of the intricate symbiotic relationship between the bacterium and the trypanosomatid host and provide clues to better understand eukaryotic cell evolution.
publishDate 2013
dc.date.none.fl_str_mv 2013-04-03
2016-01-24T14:31:34Z
2016-01-24T14:31:34Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0060209
Plos One. San Francisco: Public Library Science, v. 8, n. 4, 20 p., 2013.
10.1371/journal.pone.0060209
WOS000318840100054.pdf
1932-6203
http://repositorio.unifesp.br/handle/11600/36195
WOS:000318840100054
url http://dx.doi.org/10.1371/journal.pone.0060209
http://repositorio.unifesp.br/handle/11600/36195
identifier_str_mv Plos One. San Francisco: Public Library Science, v. 8, n. 4, 20 p., 2013.
10.1371/journal.pone.0060209
WOS000318840100054.pdf
1932-6203
WOS:000318840100054
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Plos One
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 20
application/pdf
dc.publisher.none.fl_str_mv Public Library Science
publisher.none.fl_str_mv Public Library Science
dc.source.none.fl_str_mv reponame:Repositório Institucional da UNIFESP
instname:Universidade Federal de São Paulo (UNIFESP)
instacron:UNIFESP
instname_str Universidade Federal de São Paulo (UNIFESP)
instacron_str UNIFESP
institution UNIFESP
reponame_str Repositório Institucional da UNIFESP
collection Repositório Institucional da UNIFESP
repository.name.fl_str_mv Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)
repository.mail.fl_str_mv biblioteca.csp@unifesp.br
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