Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family
Autor(a) principal: | |
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Data de Publicação: | 2013 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNIFESP |
Texto Completo: | http://dx.doi.org/10.1371/journal.pone.0060209 http://repositorio.unifesp.br/handle/11600/36195 |
Resumo: | Endosymbiont-bearing trypanosomatids have been considered excellent models for the study of cell evolution because the host protozoan co-evolves with an intracellular bacterium in a mutualistic relationship. Such protozoa inhabit a single invertebrate host during their entire life cycle and exhibit special characteristics that group them in a particular phylogenetic cluster of the Trypanosomatidae family, thus classified as monoxenics. in an effort to better understand such symbiotic association, we used DNA pyrosequencing and a reference-guided assembly to generate reads that predicted 16,960 and 12,162 open reading frames (ORFs) in two symbiont-bearing trypanosomatids, Angomonas deanei (previously named as Crithidia deanei) and Strigomonas culicis (first known as Blastocrithidia culicis), respectively. Identification of each ORF was based primarily on TriTrypDB using tblastn, and each ORF was confirmed by employing getorf from EMBOSS and Newbler 2.6 when necessary. the monoxenic organisms revealed conserved housekeeping functions when compared to other trypanosomatids, especially compared with Leishmania major. However, major differences were found in ORFs corresponding to the cytoskeleton, the kinetoplast, and the paraflagellar structure. the monoxenic organisms also contain a large number of genes for cytosolic calpain-like and surface gp63 metalloproteases and a reduced number of compartmentalized cysteine proteases in comparison to other TriTryp organisms, reflecting adaptations to the presence of the symbiont. the assembled bacterial endosymbiont sequences exhibit a high A+T content with a total of 787 and 769 ORFs for the Angomonas deanei and Strigomonas culicis endosymbionts, respectively, and indicate that these organisms hold a common ancestor related to the Alcaligenaceae family. Importantly, both symbionts contain enzymes that complement essential host cell biosynthetic pathways, such as those for amino acid, lipid and purine/pyrimidine metabolism. These findings increase our understanding of the intricate symbiotic relationship between the bacterium and the trypanosomatid host and provide clues to better understand eukaryotic cell evolution. |
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Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae FamilyEndosymbiont-bearing trypanosomatids have been considered excellent models for the study of cell evolution because the host protozoan co-evolves with an intracellular bacterium in a mutualistic relationship. Such protozoa inhabit a single invertebrate host during their entire life cycle and exhibit special characteristics that group them in a particular phylogenetic cluster of the Trypanosomatidae family, thus classified as monoxenics. in an effort to better understand such symbiotic association, we used DNA pyrosequencing and a reference-guided assembly to generate reads that predicted 16,960 and 12,162 open reading frames (ORFs) in two symbiont-bearing trypanosomatids, Angomonas deanei (previously named as Crithidia deanei) and Strigomonas culicis (first known as Blastocrithidia culicis), respectively. Identification of each ORF was based primarily on TriTrypDB using tblastn, and each ORF was confirmed by employing getorf from EMBOSS and Newbler 2.6 when necessary. the monoxenic organisms revealed conserved housekeeping functions when compared to other trypanosomatids, especially compared with Leishmania major. However, major differences were found in ORFs corresponding to the cytoskeleton, the kinetoplast, and the paraflagellar structure. the monoxenic organisms also contain a large number of genes for cytosolic calpain-like and surface gp63 metalloproteases and a reduced number of compartmentalized cysteine proteases in comparison to other TriTryp organisms, reflecting adaptations to the presence of the symbiont. the assembled bacterial endosymbiont sequences exhibit a high A+T content with a total of 787 and 769 ORFs for the Angomonas deanei and Strigomonas culicis endosymbionts, respectively, and indicate that these organisms hold a common ancestor related to the Alcaligenaceae family. Importantly, both symbionts contain enzymes that complement essential host cell biosynthetic pathways, such as those for amino acid, lipid and purine/pyrimidine metabolism. These findings increase our understanding of the intricate symbiotic relationship between the bacterium and the trypanosomatid host and provide clues to better understand eukaryotic cell evolution.Univ Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Lab Ultraestrutura Celular Hertha Meyer, BR-21941 Rio de Janeiro, BrazilUniv Fed Rio de Janeiro, Inst Biofis Carlos Chagas Filho, Lab Metab Macromol Firmino Torres de Castro, BR-21941 Rio de Janeiro, BrazilLab Bioinformat, Lab Nacl Computacao Cient, Rio de Janeiro, BrazilINRIA Grenoble Rhone Alpes, BAMBOO Team, Villeurbanne, FranceUniv Lyon 1, CNRS, UMR5558, Lab Biometrie & Biol Evolut, F-69622 Villeurbanne, FranceUniv Estadual Campinas, Inst Biol, Dept Genet Evolucao & Bioagentes, São Paulo, BrazilUniv São Paulo, Fac Ciencias Farmaceut Ribeirao Preto, Dept Ciencias Farmaceut, São Paulo, BrazilLab Nacl Ciencia & Tecnol Bioetano, São Paulo, BrazilUniv Fed Minas Gerais, Inst Ciencias Biol, Dept Bioquim & Imunol, Belo Horizonte, MG, BrazilUniv Fed Goias, Inst Ciencias Biol, Mol Biol Lab, Goiania, Go, BrazilFundacao Oswaldo Cruz, Inst Carlos Chagas, Lab Biol Mol Tripanossomatideos, Curitiba, Parana, BrazilFundacao Oswaldo Cruz, Inst Carlos Chagas, Lab Genom Func, Curitiba, Parana, BrazilUniv Estadual Campinas, Ctr Pluridisciplinar Pesquisas Quim Biol & Agr, São Paulo, BrazilUniv Fed Minas Gerais, Inst Ciencias Biol, Dept Parasitol, Belo Horizonte, MG, BrazilUniv Fed Santa Catarina, Dept Microbiol Imunol & Parasitol, Ctr Ciencias Biol, Lab Protozool & Bioinformat, Florianopolis, SC, BrazilUniv Fed Vicosa, Dept Bioquim & Biol Mol, Ctr Ciencias Biol & Saude, Vicosa, MG, BrazilInst Butantan, Lab Especial Ciclo Celular, São Paulo, BrazilUniv São Paulo, Dept Biol, Fac Filosofia Ciencias & Letras Ribeirao Preto, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Microbiol Imunol & Parasitol, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Microbiol Imunol & Parasitol, São Paulo, BrazilWeb of ScienceFundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)ERC AdG SISYPHEPublic Library ScienceUniversidade Federal do Rio de Janeiro (UFRJ)Lab BioinformatINRIA Grenoble Rhone AlpesUniv Lyon 1Universidade Estadual de Campinas (UNICAMP)Universidade de São Paulo (USP)Lab Nacl Ciencia & Tecnol BioetanoUniversidade Federal de Minas Gerais (UFMG)Universidade Federal de Goiás (UFG)Fundacao Oswaldo CruzUniversidade Federal de Santa Catarina (UFSC)Universidade Federal de Viçosa (UFV)Inst ButantanUniversidade Federal de São Paulo (UNIFESP)Motta, Maria Cristina MachadoAzevedo Martins, Allan Cezar deSouza, Silvana Sant'Anna deCosta Catta-Preta, Carolina MouraSilva, RosaneKlein, Cecilia CoimbraPaula de Almeida, Luiz GonzagaCunha, Oberdan de LimaCiapina, Luciane PrioliBrocchi, MarceloColabardini, Ana CristinaLima, Bruna de AraujoMachado, Carlos RenatoAlmeida Soares, Celia Maria deProbst, Christian MacagnanAfonso de Menezes, Claudia BeatrizThompson, Claudia ElizabethBartholomeu, Daniella CastanheiraGradia, Daniela FioriPavoni, Daniela ParadaGrisard, Edmundo C.Fantinatti-Garboggini, FabianaMarchini, Fabricio KleryntonRodrigues-Luiz, Gabriela FlaiaWagner, GlauberGoldman, Gustavo HenriqueRangel Fietto, Juliana LopesElias, Maria CarolinaGoldman, Maria Helena S.Sagot, Marie-FrancePereira, MaristelaStoco, Patricia H.Mendonca-Neto, Rondon Pessoa deRibeiro Teixeira, Santuza MariaFerreira Maciel, Talles EduardoOliveira Mendes, Tiago Antonio deUermenyi, Turan P.Souza, Wanderley deSchenkman, Sergio [UNIFESP]Ribeiro de Vasconcelos, Ana Tereza2016-01-24T14:31:34Z2016-01-24T14:31:34Z2013-04-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersion20application/pdfhttp://dx.doi.org/10.1371/journal.pone.0060209Plos One. San Francisco: Public Library Science, v. 8, n. 4, 20 p., 2013.10.1371/journal.pone.0060209WOS000318840100054.pdf1932-6203http://repositorio.unifesp.br/handle/11600/36195WOS:000318840100054engPlos Oneinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UNIFESPinstname:Universidade Federal de São Paulo (UNIFESP)instacron:UNIFESP2024-07-30T08:28:38Zoai:repositorio.unifesp.br/:11600/36195Repositório InstitucionalPUBhttp://www.repositorio.unifesp.br/oai/requestbiblioteca.csp@unifesp.bropendoar:34652024-07-30T08:28:38Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP)false |
dc.title.none.fl_str_mv |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family |
title |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family |
spellingShingle |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family Motta, Maria Cristina Machado |
title_short |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family |
title_full |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family |
title_fullStr |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family |
title_full_unstemmed |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family |
title_sort |
Predicting the Proteins of Angomonas deanei, Strigomonas culicis and Their Respective Endosymbionts Reveals New Aspects of the Trypanosomatidae Family |
author |
Motta, Maria Cristina Machado |
author_facet |
Motta, Maria Cristina Machado Azevedo Martins, Allan Cezar de Souza, Silvana Sant'Anna de Costa Catta-Preta, Carolina Moura Silva, Rosane Klein, Cecilia Coimbra Paula de Almeida, Luiz Gonzaga Cunha, Oberdan de Lima Ciapina, Luciane Prioli Brocchi, Marcelo Colabardini, Ana Cristina Lima, Bruna de Araujo Machado, Carlos Renato Almeida Soares, Celia Maria de Probst, Christian Macagnan Afonso de Menezes, Claudia Beatriz Thompson, Claudia Elizabeth Bartholomeu, Daniella Castanheira Gradia, Daniela Fiori Pavoni, Daniela Parada Grisard, Edmundo C. Fantinatti-Garboggini, Fabiana Marchini, Fabricio Klerynton Rodrigues-Luiz, Gabriela Flaia Wagner, Glauber Goldman, Gustavo Henrique Rangel Fietto, Juliana Lopes Elias, Maria Carolina Goldman, Maria Helena S. Sagot, Marie-France Pereira, Maristela Stoco, Patricia H. Mendonca-Neto, Rondon Pessoa de Ribeiro Teixeira, Santuza Maria Ferreira Maciel, Talles Eduardo Oliveira Mendes, Tiago Antonio de Uermenyi, Turan P. Souza, Wanderley de Schenkman, Sergio [UNIFESP] Ribeiro de Vasconcelos, Ana Tereza |
author_role |
author |
author2 |
Azevedo Martins, Allan Cezar de Souza, Silvana Sant'Anna de Costa Catta-Preta, Carolina Moura Silva, Rosane Klein, Cecilia Coimbra Paula de Almeida, Luiz Gonzaga Cunha, Oberdan de Lima Ciapina, Luciane Prioli Brocchi, Marcelo Colabardini, Ana Cristina Lima, Bruna de Araujo Machado, Carlos Renato Almeida Soares, Celia Maria de Probst, Christian Macagnan Afonso de Menezes, Claudia Beatriz Thompson, Claudia Elizabeth Bartholomeu, Daniella Castanheira Gradia, Daniela Fiori Pavoni, Daniela Parada Grisard, Edmundo C. Fantinatti-Garboggini, Fabiana Marchini, Fabricio Klerynton Rodrigues-Luiz, Gabriela Flaia Wagner, Glauber Goldman, Gustavo Henrique Rangel Fietto, Juliana Lopes Elias, Maria Carolina Goldman, Maria Helena S. Sagot, Marie-France Pereira, Maristela Stoco, Patricia H. Mendonca-Neto, Rondon Pessoa de Ribeiro Teixeira, Santuza Maria Ferreira Maciel, Talles Eduardo Oliveira Mendes, Tiago Antonio de Uermenyi, Turan P. Souza, Wanderley de Schenkman, Sergio [UNIFESP] Ribeiro de Vasconcelos, Ana Tereza |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal do Rio de Janeiro (UFRJ) Lab Bioinformat INRIA Grenoble Rhone Alpes Univ Lyon 1 Universidade Estadual de Campinas (UNICAMP) Universidade de São Paulo (USP) Lab Nacl Ciencia & Tecnol Bioetano Universidade Federal de Minas Gerais (UFMG) Universidade Federal de Goiás (UFG) Fundacao Oswaldo Cruz Universidade Federal de Santa Catarina (UFSC) Universidade Federal de Viçosa (UFV) Inst Butantan Universidade Federal de São Paulo (UNIFESP) |
dc.contributor.author.fl_str_mv |
Motta, Maria Cristina Machado Azevedo Martins, Allan Cezar de Souza, Silvana Sant'Anna de Costa Catta-Preta, Carolina Moura Silva, Rosane Klein, Cecilia Coimbra Paula de Almeida, Luiz Gonzaga Cunha, Oberdan de Lima Ciapina, Luciane Prioli Brocchi, Marcelo Colabardini, Ana Cristina Lima, Bruna de Araujo Machado, Carlos Renato Almeida Soares, Celia Maria de Probst, Christian Macagnan Afonso de Menezes, Claudia Beatriz Thompson, Claudia Elizabeth Bartholomeu, Daniella Castanheira Gradia, Daniela Fiori Pavoni, Daniela Parada Grisard, Edmundo C. Fantinatti-Garboggini, Fabiana Marchini, Fabricio Klerynton Rodrigues-Luiz, Gabriela Flaia Wagner, Glauber Goldman, Gustavo Henrique Rangel Fietto, Juliana Lopes Elias, Maria Carolina Goldman, Maria Helena S. Sagot, Marie-France Pereira, Maristela Stoco, Patricia H. Mendonca-Neto, Rondon Pessoa de Ribeiro Teixeira, Santuza Maria Ferreira Maciel, Talles Eduardo Oliveira Mendes, Tiago Antonio de Uermenyi, Turan P. Souza, Wanderley de Schenkman, Sergio [UNIFESP] Ribeiro de Vasconcelos, Ana Tereza |
description |
Endosymbiont-bearing trypanosomatids have been considered excellent models for the study of cell evolution because the host protozoan co-evolves with an intracellular bacterium in a mutualistic relationship. Such protozoa inhabit a single invertebrate host during their entire life cycle and exhibit special characteristics that group them in a particular phylogenetic cluster of the Trypanosomatidae family, thus classified as monoxenics. in an effort to better understand such symbiotic association, we used DNA pyrosequencing and a reference-guided assembly to generate reads that predicted 16,960 and 12,162 open reading frames (ORFs) in two symbiont-bearing trypanosomatids, Angomonas deanei (previously named as Crithidia deanei) and Strigomonas culicis (first known as Blastocrithidia culicis), respectively. Identification of each ORF was based primarily on TriTrypDB using tblastn, and each ORF was confirmed by employing getorf from EMBOSS and Newbler 2.6 when necessary. the monoxenic organisms revealed conserved housekeeping functions when compared to other trypanosomatids, especially compared with Leishmania major. However, major differences were found in ORFs corresponding to the cytoskeleton, the kinetoplast, and the paraflagellar structure. the monoxenic organisms also contain a large number of genes for cytosolic calpain-like and surface gp63 metalloproteases and a reduced number of compartmentalized cysteine proteases in comparison to other TriTryp organisms, reflecting adaptations to the presence of the symbiont. the assembled bacterial endosymbiont sequences exhibit a high A+T content with a total of 787 and 769 ORFs for the Angomonas deanei and Strigomonas culicis endosymbionts, respectively, and indicate that these organisms hold a common ancestor related to the Alcaligenaceae family. Importantly, both symbionts contain enzymes that complement essential host cell biosynthetic pathways, such as those for amino acid, lipid and purine/pyrimidine metabolism. These findings increase our understanding of the intricate symbiotic relationship between the bacterium and the trypanosomatid host and provide clues to better understand eukaryotic cell evolution. |
publishDate |
2013 |
dc.date.none.fl_str_mv |
2013-04-03 2016-01-24T14:31:34Z 2016-01-24T14:31:34Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1371/journal.pone.0060209 Plos One. San Francisco: Public Library Science, v. 8, n. 4, 20 p., 2013. 10.1371/journal.pone.0060209 WOS000318840100054.pdf 1932-6203 http://repositorio.unifesp.br/handle/11600/36195 WOS:000318840100054 |
url |
http://dx.doi.org/10.1371/journal.pone.0060209 http://repositorio.unifesp.br/handle/11600/36195 |
identifier_str_mv |
Plos One. San Francisco: Public Library Science, v. 8, n. 4, 20 p., 2013. 10.1371/journal.pone.0060209 WOS000318840100054.pdf 1932-6203 WOS:000318840100054 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Plos One |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
20 application/pdf |
dc.publisher.none.fl_str_mv |
Public Library Science |
publisher.none.fl_str_mv |
Public Library Science |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UNIFESP instname:Universidade Federal de São Paulo (UNIFESP) instacron:UNIFESP |
instname_str |
Universidade Federal de São Paulo (UNIFESP) |
instacron_str |
UNIFESP |
institution |
UNIFESP |
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Repositório Institucional da UNIFESP |
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Repositório Institucional da UNIFESP |
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Repositório Institucional da UNIFESP - Universidade Federal de São Paulo (UNIFESP) |
repository.mail.fl_str_mv |
biblioteca.csp@unifesp.br |
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1814268378654703616 |