Use of molecular markers SSR and SCAR for identification of olive accessions

Detalhes bibliográficos
Autor(a) principal: Val, Aurinete Daienn Borges do
Data de Publicação: 2020
Outros Autores: Breves, Sâmera de Souza, Cançado, Geraldo Magela de Almeida, Ferreira, Juliano Lino, Pasqual, Moacir
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Bioscience journal (Online)
Texto Completo: https://seer.ufu.br/index.php/biosciencejournal/article/view/47959
Resumo: Morphological and agronomical describers are traditionally used in plant characterization. However, the usage of these describers have some limitations such as susceptibility to abiotic and biotic stress and environmental factors. Furthermore, the describers are not stable over time and many can only be evaluated during the adult phase of the plants, which requires time and physical space. Molecular markers offer numerous advantages compared to the conventional alternatives based on phenotype: they are stable and detectable in all vegetable tissues, and are independent of the environment and development phase. One of the main advantages of the use of molecular markers is the time reduction in the identification of genetic diversity among the studied subjects, as the genotypes may even be described for the seed or seedling phase. Many countries have already adopted molecular markers to identify olive cultivars more accurately. The aim of this study was to evaluate the genetic identity of eight olive accessions supposedly belonging to cultivar Arbequina by using microsatellite (SSR) and Sequence Characterized Amplified Region (SCAR) markers. One accession corresponding to the cultivar was also incorporated into the analysis as a reference genotype. The molecular marker data were analyzed on the software GENALEX6. The markers generated an accumulated PI and PE of 1.26 x 10-6 and 0.949, respectively. The results supported the hypothesis that all accessions belong to the cultivar Arbequina, and the markers can therefore be applied to other varieties of olive species.  
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spelling Use of molecular markers SSR and SCAR for identification of olive accessionsUso dos marcadores moleculares SSR e SCAR para identificação de acessos de oliveiraOlea europaeaArbequinaDNA fingerprintingHomonymySynonymyAgronomyOlea europaeaArbequinaFingerprinting DNAHomonimiaSinonimiaMorphological and agronomical describers are traditionally used in plant characterization. However, the usage of these describers have some limitations such as susceptibility to abiotic and biotic stress and environmental factors. Furthermore, the describers are not stable over time and many can only be evaluated during the adult phase of the plants, which requires time and physical space. Molecular markers offer numerous advantages compared to the conventional alternatives based on phenotype: they are stable and detectable in all vegetable tissues, and are independent of the environment and development phase. One of the main advantages of the use of molecular markers is the time reduction in the identification of genetic diversity among the studied subjects, as the genotypes may even be described for the seed or seedling phase. Many countries have already adopted molecular markers to identify olive cultivars more accurately. The aim of this study was to evaluate the genetic identity of eight olive accessions supposedly belonging to cultivar Arbequina by using microsatellite (SSR) and Sequence Characterized Amplified Region (SCAR) markers. One accession corresponding to the cultivar was also incorporated into the analysis as a reference genotype. The molecular marker data were analyzed on the software GENALEX6. The markers generated an accumulated PI and PE of 1.26 x 10-6 and 0.949, respectively. The results supported the hypothesis that all accessions belong to the cultivar Arbequina, and the markers can therefore be applied to other varieties of olive species.  Descritores morfológicos e agronômicos são tradicionalmente utilizados na caracterização de plantas. Apesar de recomendado, o emprego destes descritores apresenta algumas limitações como a influência a estresses abióticos e bióticos e aos efeitos do ambiente. Além disso, não são estáveis ao longo do tempo e muitos só podem ser avaliados durante a fase adulta das plantas, o que requer tempo e espaço físico para as avaliações. Os marcadores moleculares oferecem numerosas vantagens relativamente às alternativas convencionais baseadas no fenótipo, pois são estáveis e detectáveis em todos os tecidos vegetais, independente do ambiente e fase de desenvolvimento e uma das principais vantagens da utilização destes é proporcionar a redução do tempo na identificação da diversidade genética entre os indivíduos trabalhados, podendo ser avaliadas genótipos ainda na fase de semente ou de plântula. O objetivo deste estudo foi avaliar a identidade genética de oito acessos de oliveira supostamente pertencentes a cultivar Arbequina usando microssatélites (SSR) e Sequence Characterized Amplified Region (SCAR) marcadores. Um acesso correspondente a cultivar também foi incorporado na análise como o genótipo de referência. Os dados de marcadores moleculares foram analisados com o software GENALEX 6. Como resultado, os marcadores SSR geraram um PI acumulada e PE de 1,26 x 10- 6 e 0,949, respectivamente. Os resultados suportam a hipótese de que todos os acessos pertencem a cultivar Arbequina, e, por conseguinte, esses marcadores podem ser aplicados em situações semelhantes em outras variedades de espécies de oliveira.  EDUFU2020-05-25info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://seer.ufu.br/index.php/biosciencejournal/article/view/4795910.14393/BJ-v36n4a2020-47959Bioscience Journal ; Vol. 36 No. 4 (2020): July/Aug.; 1137-1145Bioscience Journal ; v. 36 n. 4 (2020): julho/agosto; 1137-11451981-3163reponame:Bioscience journal (Online)instname:Universidade Federal de Uberlândia (UFU)instacron:UFUenghttps://seer.ufu.br/index.php/biosciencejournal/article/view/47959/28943Brazil; Contemporary Copyright (c) 2020 Aurinete Daienn Borges do Val, Sâmera de Souza Breves, Geraldo Magela de Almeida Cançado, Juliano Lino Ferreira, Moacir Pasqualhttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessVal, Aurinete Daienn Borges doBreves, Sâmera de SouzaCançado, Geraldo Magela de AlmeidaFerreira, Juliano LinoPasqual, Moacir2022-06-14T12:44:09Zoai:ojs.www.seer.ufu.br:article/47959Revistahttps://seer.ufu.br/index.php/biosciencejournalPUBhttps://seer.ufu.br/index.php/biosciencejournal/oaibiosciencej@ufu.br||1981-31631516-3725opendoar:2022-06-14T12:44:09Bioscience journal (Online) - Universidade Federal de Uberlândia (UFU)false
dc.title.none.fl_str_mv Use of molecular markers SSR and SCAR for identification of olive accessions
Uso dos marcadores moleculares SSR e SCAR para identificação de acessos de oliveira
title Use of molecular markers SSR and SCAR for identification of olive accessions
spellingShingle Use of molecular markers SSR and SCAR for identification of olive accessions
Val, Aurinete Daienn Borges do
Olea europaea
Arbequina
DNA fingerprinting
Homonymy
Synonymy
Agronomy
Olea europaea
Arbequina
Fingerprinting DNA
Homonimia
Sinonimia
title_short Use of molecular markers SSR and SCAR for identification of olive accessions
title_full Use of molecular markers SSR and SCAR for identification of olive accessions
title_fullStr Use of molecular markers SSR and SCAR for identification of olive accessions
title_full_unstemmed Use of molecular markers SSR and SCAR for identification of olive accessions
title_sort Use of molecular markers SSR and SCAR for identification of olive accessions
author Val, Aurinete Daienn Borges do
author_facet Val, Aurinete Daienn Borges do
Breves, Sâmera de Souza
Cançado, Geraldo Magela de Almeida
Ferreira, Juliano Lino
Pasqual, Moacir
author_role author
author2 Breves, Sâmera de Souza
Cançado, Geraldo Magela de Almeida
Ferreira, Juliano Lino
Pasqual, Moacir
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Val, Aurinete Daienn Borges do
Breves, Sâmera de Souza
Cançado, Geraldo Magela de Almeida
Ferreira, Juliano Lino
Pasqual, Moacir
dc.subject.por.fl_str_mv Olea europaea
Arbequina
DNA fingerprinting
Homonymy
Synonymy
Agronomy
Olea europaea
Arbequina
Fingerprinting DNA
Homonimia
Sinonimia
topic Olea europaea
Arbequina
DNA fingerprinting
Homonymy
Synonymy
Agronomy
Olea europaea
Arbequina
Fingerprinting DNA
Homonimia
Sinonimia
description Morphological and agronomical describers are traditionally used in plant characterization. However, the usage of these describers have some limitations such as susceptibility to abiotic and biotic stress and environmental factors. Furthermore, the describers are not stable over time and many can only be evaluated during the adult phase of the plants, which requires time and physical space. Molecular markers offer numerous advantages compared to the conventional alternatives based on phenotype: they are stable and detectable in all vegetable tissues, and are independent of the environment and development phase. One of the main advantages of the use of molecular markers is the time reduction in the identification of genetic diversity among the studied subjects, as the genotypes may even be described for the seed or seedling phase. Many countries have already adopted molecular markers to identify olive cultivars more accurately. The aim of this study was to evaluate the genetic identity of eight olive accessions supposedly belonging to cultivar Arbequina by using microsatellite (SSR) and Sequence Characterized Amplified Region (SCAR) markers. One accession corresponding to the cultivar was also incorporated into the analysis as a reference genotype. The molecular marker data were analyzed on the software GENALEX6. The markers generated an accumulated PI and PE of 1.26 x 10-6 and 0.949, respectively. The results supported the hypothesis that all accessions belong to the cultivar Arbequina, and the markers can therefore be applied to other varieties of olive species.  
publishDate 2020
dc.date.none.fl_str_mv 2020-05-25
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://seer.ufu.br/index.php/biosciencejournal/article/view/47959
10.14393/BJ-v36n4a2020-47959
url https://seer.ufu.br/index.php/biosciencejournal/article/view/47959
identifier_str_mv 10.14393/BJ-v36n4a2020-47959
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://seer.ufu.br/index.php/biosciencejournal/article/view/47959/28943
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv Brazil; Contemporary
dc.publisher.none.fl_str_mv EDUFU
publisher.none.fl_str_mv EDUFU
dc.source.none.fl_str_mv Bioscience Journal ; Vol. 36 No. 4 (2020): July/Aug.; 1137-1145
Bioscience Journal ; v. 36 n. 4 (2020): julho/agosto; 1137-1145
1981-3163
reponame:Bioscience journal (Online)
instname:Universidade Federal de Uberlândia (UFU)
instacron:UFU
instname_str Universidade Federal de Uberlândia (UFU)
instacron_str UFU
institution UFU
reponame_str Bioscience journal (Online)
collection Bioscience journal (Online)
repository.name.fl_str_mv Bioscience journal (Online) - Universidade Federal de Uberlândia (UFU)
repository.mail.fl_str_mv biosciencej@ufu.br||
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