Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes

Detalhes bibliográficos
Autor(a) principal: Vasconcelos, Ana Carolina Pereira de
Data de Publicação: 2023
Tipo de documento: Tese
Idioma: por
Título da fonte: Repositório Institucional da UFU
Texto Completo: https://repositorio.ufu.br/handle/123456789/39034
http://doi.org/10.14393/ufu.te.2023.8053
Resumo: Although studies have already been conducted with the use of biostimulants in different cultures, the results obtained have been controversial and with little scientific basis, with the need for further investigations regarding nutritional efficiency and gene expression, for better elucidation of the results obtained. The objective of this work was to study the use of biostimulants in rice plants (Oryza sativa L.), investigating their effects on nutritional responses, vegetative growth and gene expression through RNA sequencing analyses (RNA-seq). The first chapter aimed, from a literature review, to discuss the use, concepts, setbacks and benefits of biostimulants in Brazilian agriculture and the use of the transcriptomic analysis technique to identify and validate potential biomarkers, as well as the importance and use of Oryza sativa L. as a model for gene studies. The following chapters consisted of the presentation and discussion of the data obtained in this study. Thus, in Chapter 2, two biostimulants in their commercial doses, a monosylícic acid (in the testing phase for later registration with the Ministry of Agriculture) and a control were evaluated. The experiment was carried out in a greenhouse, belonging to the Federal University of Uberlândia (UFU). Pots with 10 dm3 of soil classified as Quartzarenic Neosol were used, using the cultivar BRS Primavera. The products were applied via leaf, in the V4 development stage. The experimental design was completely randomized, with six replications. The dry matter mass of the shoots and the contents and accumulation of macro and micronutrients were determined. The statistical assumptions of the data obtained were tested, with the Kolmogorov-Smirnov normality tests and the homogeneity of levene variances, both at 0.01 significance and submitted to variance analysis by Tukey test, at 0.05 of significance. In general, the application of biostimulants and monosylícic acid alters the leaf contents of calcium, manganese, boron and copper. In Chapter 3, the experiment was carried out in a greenhouse, belonging to the UFU. Pots with 10 dm3 of soil classified as Quartzarenic Neosol were used, using the cultivar BRS Primavera. A biostimulant was evaluated, applied via leaf, in the development stage V4. The experimental design was completely randomized, with three biological replications. The collection of plant material was performed at the reproductive stage (R4). The samples were collected and immediately frozen in liquid N2, stored at -80º C and sent for cell transcriptome (RNA-seq). Bioinformatics analysis was performed for the analysis of molecular data. Differential expression analyses identified 498 genes differentially expressed in leaf tissue of Oryza sativa L., when treated with the biostimulant. For up-regulated genes, it was observed the increase in gene expression closely related to defense mechanisms, stress responses, flowering, gene transcription/translation regulation and plant metabolism. For down-regulated genes, it was possible to observe mainly genes related to photosynthesis, stress responses, plant development and floral regulation.
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spelling Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantesNutrition and transcriptomic profile analysis by RNA-seq in rice submitted to biostimulant applicationagroquímicos de regulação hormonaldefesa vegetalfloraçãofotossíntesenutrição mineralOryza sativaRNA-seqtermotolerânciatranscriptomafloweringhormonal regulation agrochemicalsmineral nutritionphotosynthesisplant defensethermotolerancetranscriptomeagronomiaCNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLO::FERTILIDADE DO SOLO E ADUBACAOAgronomiaArroz - ProcessamentoCarboidratos na nutrição humanaNutrição - EstimulantesAlthough studies have already been conducted with the use of biostimulants in different cultures, the results obtained have been controversial and with little scientific basis, with the need for further investigations regarding nutritional efficiency and gene expression, for better elucidation of the results obtained. The objective of this work was to study the use of biostimulants in rice plants (Oryza sativa L.), investigating their effects on nutritional responses, vegetative growth and gene expression through RNA sequencing analyses (RNA-seq). The first chapter aimed, from a literature review, to discuss the use, concepts, setbacks and benefits of biostimulants in Brazilian agriculture and the use of the transcriptomic analysis technique to identify and validate potential biomarkers, as well as the importance and use of Oryza sativa L. as a model for gene studies. The following chapters consisted of the presentation and discussion of the data obtained in this study. Thus, in Chapter 2, two biostimulants in their commercial doses, a monosylícic acid (in the testing phase for later registration with the Ministry of Agriculture) and a control were evaluated. The experiment was carried out in a greenhouse, belonging to the Federal University of Uberlândia (UFU). Pots with 10 dm3 of soil classified as Quartzarenic Neosol were used, using the cultivar BRS Primavera. The products were applied via leaf, in the V4 development stage. The experimental design was completely randomized, with six replications. The dry matter mass of the shoots and the contents and accumulation of macro and micronutrients were determined. The statistical assumptions of the data obtained were tested, with the Kolmogorov-Smirnov normality tests and the homogeneity of levene variances, both at 0.01 significance and submitted to variance analysis by Tukey test, at 0.05 of significance. In general, the application of biostimulants and monosylícic acid alters the leaf contents of calcium, manganese, boron and copper. In Chapter 3, the experiment was carried out in a greenhouse, belonging to the UFU. Pots with 10 dm3 of soil classified as Quartzarenic Neosol were used, using the cultivar BRS Primavera. A biostimulant was evaluated, applied via leaf, in the development stage V4. The experimental design was completely randomized, with three biological replications. The collection of plant material was performed at the reproductive stage (R4). The samples were collected and immediately frozen in liquid N2, stored at -80º C and sent for cell transcriptome (RNA-seq). Bioinformatics analysis was performed for the analysis of molecular data. Differential expression analyses identified 498 genes differentially expressed in leaf tissue of Oryza sativa L., when treated with the biostimulant. For up-regulated genes, it was observed the increase in gene expression closely related to defense mechanisms, stress responses, flowering, gene transcription/translation regulation and plant metabolism. For down-regulated genes, it was possible to observe mainly genes related to photosynthesis, stress responses, plant development and floral regulation.CAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorTese (Doutorado)Apesar de já terem sido realizados estudos com o uso de bioestimulantes em diferentes culturas, os resultados obtidos têm sido controversos e com pouca base científica, havendo a necessidade de maiores investigações a respeito da eficiência nutricional e expressão de genes, para melhor elucidação dos resultados obtidos. O objetivo deste trabalho foi estudar o uso de bioestimulantes em plantas de arroz (Oryza sativa L.), investigando seus efeitos nas respostas nutricionais, no crescimento vegetativo e na expressão gênica por meio de análises de sequenciamento de RNA (RNA-seq). O primeiro capítulo teve a finalidade de, a partir de uma revisão bibliográfica, discutir o uso, os conceitos, os percalços e os benefícios dos bioestimulantes na agricultura brasileira e o uso da técnica de análise transcriptômica para identificar e validar biomarcadores potenciais, bem como a importância e a utilização de Oryza sativa L. como planta modelo para estudos gênicos. Os capítulos seguintes consistiram na apresentação e discussão dos dados obtidos neste estudo. Assim, no Capítulo 2, foram avaliados dois bioestimulantes em suas doses comerciais, um ácido monossilícico (em fase de testes para posterior registro junto ao Ministério da Agricultura) e uma testemunha. O experimento foi realizado em casa de vegetação pertencente à Universidade Federal de Uberlândia (UFU). Foram utilizados vasos com 10 dm3 de solo classificado como Neossolo Quartzarênico, utilizando-se a cultivar BRS Primavera. Os produtos foram aplicados via foliar, no estádio de desenvolvimento V4. O delineamento experimental foi inteiramente casualizado, com seis repetições. Foram determinadas a massa de matéria seca da parte aérea e os teores e acúmulo de macro e micronutrientes. Foram testadas as pressuposições estatísticas dos dados obtidos com os testes de normalidade de Kolmogorov-Smirnov e de homogeneidade das variâncias de Levene, ambos a 0,01 de significância e submetidos à análise de variância pelo teste de Tukey, a 0,05 de significância. De modo geral, a aplicação de bioestimulantes e ácido monossilícico altera os teores foliares de cálcio, manganês, boro e cobre. Já no Capítulo 3, o experimento foi realizado em casa de vegetação, pertencente à UFU. Foram utilizados vasos com 10 dm3 de solo classificado como Neossolo Quartzarênico, utilizando-se a cultivar BRS Primavera. Foi avaliado um bioestimulante, aplicado via foliar, no estádio de desenvolvimento V4. O delineamento experimental foi inteiramente casualizado, com três repetições biológicas. A coleta de material vegetal foi realizada no estádio reprodutivo (R4). As amostras foram colhidas e imediatamente congeladas em N2 líquido, armazenadas a -80º C e encaminhadas para realização das análises de RNA-seq. Para a análise dos dados moleculares foi realizada a análise de bioinformática. Foram identificados 498 genes diferencialmente expressos em tecido foliar de Oryza sativa L., quando tratadas com o bioestimulante. Para os genes regulados positivamente, observou-se o aumento de expressão de genes intimamente relacionados a mecanismos de defesa, respostas a estresses, floração, regulação de transcrição/tradução gênica e metabolismo vegetal. Já para os genes regulados negativamente, pôde-se observar principalmente genes relacionados à fotossíntese, respostas a estresses, desenvolvimento e regulação floral.2025-06-02Universidade Federal de UberlândiaBrasilPrograma de Pós-graduação em AgronomiaPereira, Hamilton Seronhttp://lattes.cnpq.br/4532276726985491Chalfun Junior, Antôniohttp://lattes.cnpq.br/4087292732830100Lana, Regina Maria Quintãohttp://lattes.cnpq.br/4734473545002682Coelho, Lísiashttp://lattes.cnpq.br/7244834949488725Almeida, João Eduardo Melo dehttp://lattes.cnpq.br/7338103831397727Vasconcelos, Ana Carolina Pereira de2023-09-04T18:07:28Z2023-09-04T18:07:28Z2023-03-02info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfVASCONCELOS, Ana Carolina Pereira de. Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes. 2023. 185 f. Tese (Doutorado em Agronomia) – Universidade Federal de Uberlândia, Uberlândia, 2023. DOI http://doi.org/10.14393/ufu.te.2023.8053https://repositorio.ufu.br/handle/123456789/39034http://doi.org/10.14393/ufu.te.2023.8053porhttp://creativecommons.org/licenses/by-nc-nd/3.0/us/info:eu-repo/semantics/embargoedAccessreponame:Repositório Institucional da UFUinstname:Universidade Federal de Uberlândia (UFU)instacron:UFU2024-08-22T16:53:53Zoai:repositorio.ufu.br:123456789/39034Repositório InstitucionalONGhttp://repositorio.ufu.br/oai/requestdiinf@dirbi.ufu.bropendoar:2024-08-22T16:53:53Repositório Institucional da UFU - Universidade Federal de Uberlândia (UFU)false
dc.title.none.fl_str_mv Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
Nutrition and transcriptomic profile analysis by RNA-seq in rice submitted to biostimulant application
title Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
spellingShingle Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
Vasconcelos, Ana Carolina Pereira de
agroquímicos de regulação hormonal
defesa vegetal
floração
fotossíntese
nutrição mineral
Oryza sativa
RNA-seq
termotolerância
transcriptoma
flowering
hormonal regulation agrochemicals
mineral nutrition
photosynthesis
plant defense
thermotolerance
transcriptome
agronomia
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLO::FERTILIDADE DO SOLO E ADUBACAO
Agronomia
Arroz - Processamento
Carboidratos na nutrição humana
Nutrição - Estimulantes
title_short Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
title_full Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
title_fullStr Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
title_full_unstemmed Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
title_sort Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes
author Vasconcelos, Ana Carolina Pereira de
author_facet Vasconcelos, Ana Carolina Pereira de
author_role author
dc.contributor.none.fl_str_mv Pereira, Hamilton Seron
http://lattes.cnpq.br/4532276726985491
Chalfun Junior, Antônio
http://lattes.cnpq.br/4087292732830100
Lana, Regina Maria Quintão
http://lattes.cnpq.br/4734473545002682
Coelho, Lísias
http://lattes.cnpq.br/7244834949488725
Almeida, João Eduardo Melo de
http://lattes.cnpq.br/7338103831397727
dc.contributor.author.fl_str_mv Vasconcelos, Ana Carolina Pereira de
dc.subject.por.fl_str_mv agroquímicos de regulação hormonal
defesa vegetal
floração
fotossíntese
nutrição mineral
Oryza sativa
RNA-seq
termotolerância
transcriptoma
flowering
hormonal regulation agrochemicals
mineral nutrition
photosynthesis
plant defense
thermotolerance
transcriptome
agronomia
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLO::FERTILIDADE DO SOLO E ADUBACAO
Agronomia
Arroz - Processamento
Carboidratos na nutrição humana
Nutrição - Estimulantes
topic agroquímicos de regulação hormonal
defesa vegetal
floração
fotossíntese
nutrição mineral
Oryza sativa
RNA-seq
termotolerância
transcriptoma
flowering
hormonal regulation agrochemicals
mineral nutrition
photosynthesis
plant defense
thermotolerance
transcriptome
agronomia
CNPQ::CIENCIAS AGRARIAS::AGRONOMIA::CIENCIA DO SOLO::FERTILIDADE DO SOLO E ADUBACAO
Agronomia
Arroz - Processamento
Carboidratos na nutrição humana
Nutrição - Estimulantes
description Although studies have already been conducted with the use of biostimulants in different cultures, the results obtained have been controversial and with little scientific basis, with the need for further investigations regarding nutritional efficiency and gene expression, for better elucidation of the results obtained. The objective of this work was to study the use of biostimulants in rice plants (Oryza sativa L.), investigating their effects on nutritional responses, vegetative growth and gene expression through RNA sequencing analyses (RNA-seq). The first chapter aimed, from a literature review, to discuss the use, concepts, setbacks and benefits of biostimulants in Brazilian agriculture and the use of the transcriptomic analysis technique to identify and validate potential biomarkers, as well as the importance and use of Oryza sativa L. as a model for gene studies. The following chapters consisted of the presentation and discussion of the data obtained in this study. Thus, in Chapter 2, two biostimulants in their commercial doses, a monosylícic acid (in the testing phase for later registration with the Ministry of Agriculture) and a control were evaluated. The experiment was carried out in a greenhouse, belonging to the Federal University of Uberlândia (UFU). Pots with 10 dm3 of soil classified as Quartzarenic Neosol were used, using the cultivar BRS Primavera. The products were applied via leaf, in the V4 development stage. The experimental design was completely randomized, with six replications. The dry matter mass of the shoots and the contents and accumulation of macro and micronutrients were determined. The statistical assumptions of the data obtained were tested, with the Kolmogorov-Smirnov normality tests and the homogeneity of levene variances, both at 0.01 significance and submitted to variance analysis by Tukey test, at 0.05 of significance. In general, the application of biostimulants and monosylícic acid alters the leaf contents of calcium, manganese, boron and copper. In Chapter 3, the experiment was carried out in a greenhouse, belonging to the UFU. Pots with 10 dm3 of soil classified as Quartzarenic Neosol were used, using the cultivar BRS Primavera. A biostimulant was evaluated, applied via leaf, in the development stage V4. The experimental design was completely randomized, with three biological replications. The collection of plant material was performed at the reproductive stage (R4). The samples were collected and immediately frozen in liquid N2, stored at -80º C and sent for cell transcriptome (RNA-seq). Bioinformatics analysis was performed for the analysis of molecular data. Differential expression analyses identified 498 genes differentially expressed in leaf tissue of Oryza sativa L., when treated with the biostimulant. For up-regulated genes, it was observed the increase in gene expression closely related to defense mechanisms, stress responses, flowering, gene transcription/translation regulation and plant metabolism. For down-regulated genes, it was possible to observe mainly genes related to photosynthesis, stress responses, plant development and floral regulation.
publishDate 2023
dc.date.none.fl_str_mv 2023-09-04T18:07:28Z
2023-09-04T18:07:28Z
2023-03-02
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv VASCONCELOS, Ana Carolina Pereira de. Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes. 2023. 185 f. Tese (Doutorado em Agronomia) – Universidade Federal de Uberlândia, Uberlândia, 2023. DOI http://doi.org/10.14393/ufu.te.2023.8053
https://repositorio.ufu.br/handle/123456789/39034
http://doi.org/10.14393/ufu.te.2023.8053
identifier_str_mv VASCONCELOS, Ana Carolina Pereira de. Nutrição e análise do perfil transcriptômico por RNA-seq em arroz submetido à aplicação de bioestimulantes. 2023. 185 f. Tese (Doutorado em Agronomia) – Universidade Federal de Uberlândia, Uberlândia, 2023. DOI http://doi.org/10.14393/ufu.te.2023.8053
url https://repositorio.ufu.br/handle/123456789/39034
http://doi.org/10.14393/ufu.te.2023.8053
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dc.publisher.none.fl_str_mv Universidade Federal de Uberlândia
Brasil
Programa de Pós-graduação em Agronomia
publisher.none.fl_str_mv Universidade Federal de Uberlândia
Brasil
Programa de Pós-graduação em Agronomia
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFU
instname:Universidade Federal de Uberlândia (UFU)
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instname_str Universidade Federal de Uberlândia (UFU)
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institution UFU
reponame_str Repositório Institucional da UFU
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