SNP markers associated with soybean partial resistance to Phytophthora sojae
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | LOCUS Repositório Institucional da UFV |
Texto Completo: | http://dx.doi.org/10.1590/1984-70332019v19n1a05 http://locus.ufv.br//handle/123456789/25738 |
Resumo: | Phytophthora root and stem rot is one of the most aggressive diseases in soybean crop. The use of resistant cultivars is the main strategy to reduce losses caused by the pathogen. This study aims to identify SNP markers associated with genes or QTLs that provide soybean with partial resistance to Phytophthora sojae. A total of 169 soybean cultivars were inoculated with Phytophthora sojae and genotyped with 3,807 SNP markers. Genome-wide association analysis was carried out via multiple linear models, followed by multiple linear regression and linkage disequilibrium analysis. Four QTLs associated with the characteristic were identified: two on chromosome 3 and two on chromosome 15. The regions containing these QTLs contain genes already annotated as providers of resistance to pathogens, in plants. The use of those markers in the selection of resistant plants can increase the efficiency of breeding programs in the development of soybean varieties resistant to P. sojae. |
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Ludke, Willian HytaloSchuste, IvanSilva, Felipe Lopes daMontecelli, Tatiane Dalla NoraSoares, Bruno de AlmeidaOliveira, Aloizio Borém deVolpato, Leonardo2019-06-07T13:58:30Z2019-06-07T13:58:30Z2019-0119847033http://dx.doi.org/10.1590/1984-70332019v19n1a05http://locus.ufv.br//handle/123456789/25738Phytophthora root and stem rot is one of the most aggressive diseases in soybean crop. The use of resistant cultivars is the main strategy to reduce losses caused by the pathogen. This study aims to identify SNP markers associated with genes or QTLs that provide soybean with partial resistance to Phytophthora sojae. A total of 169 soybean cultivars were inoculated with Phytophthora sojae and genotyped with 3,807 SNP markers. Genome-wide association analysis was carried out via multiple linear models, followed by multiple linear regression and linkage disequilibrium analysis. Four QTLs associated with the characteristic were identified: two on chromosome 3 and two on chromosome 15. The regions containing these QTLs contain genes already annotated as providers of resistance to pathogens, in plants. The use of those markers in the selection of resistant plants can increase the efficiency of breeding programs in the development of soybean varieties resistant to P. sojae.engCrop Breeding and Applied Biotechnologyv. 19, n. 01, p. 31- 39, jan./ mar. 2019Glycine max (L.) MerriPhytophthora root and stem rotSNPGWASLinkage disequilibriumSNP markers associated with soybean partial resistance to Phytophthora sojaeinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdftexto completoapplication/pdf919948https://locus.ufv.br//bitstream/123456789/25738/1/artigo.pdfd07f6025674a310b94106b82e710ce64MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/25738/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/257382019-06-07 11:17:06.565oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452019-06-07T14:17:06LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
dc.title.en.fl_str_mv |
SNP markers associated with soybean partial resistance to Phytophthora sojae |
title |
SNP markers associated with soybean partial resistance to Phytophthora sojae |
spellingShingle |
SNP markers associated with soybean partial resistance to Phytophthora sojae Ludke, Willian Hytalo Glycine max (L.) Merri Phytophthora root and stem rot SNP GWAS Linkage disequilibrium |
title_short |
SNP markers associated with soybean partial resistance to Phytophthora sojae |
title_full |
SNP markers associated with soybean partial resistance to Phytophthora sojae |
title_fullStr |
SNP markers associated with soybean partial resistance to Phytophthora sojae |
title_full_unstemmed |
SNP markers associated with soybean partial resistance to Phytophthora sojae |
title_sort |
SNP markers associated with soybean partial resistance to Phytophthora sojae |
author |
Ludke, Willian Hytalo |
author_facet |
Ludke, Willian Hytalo Schuste, Ivan Silva, Felipe Lopes da Montecelli, Tatiane Dalla Nora Soares, Bruno de Almeida Oliveira, Aloizio Borém de Volpato, Leonardo |
author_role |
author |
author2 |
Schuste, Ivan Silva, Felipe Lopes da Montecelli, Tatiane Dalla Nora Soares, Bruno de Almeida Oliveira, Aloizio Borém de Volpato, Leonardo |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Ludke, Willian Hytalo Schuste, Ivan Silva, Felipe Lopes da Montecelli, Tatiane Dalla Nora Soares, Bruno de Almeida Oliveira, Aloizio Borém de Volpato, Leonardo |
dc.subject.pt-BR.fl_str_mv |
Glycine max (L.) Merri Phytophthora root and stem rot SNP GWAS Linkage disequilibrium |
topic |
Glycine max (L.) Merri Phytophthora root and stem rot SNP GWAS Linkage disequilibrium |
description |
Phytophthora root and stem rot is one of the most aggressive diseases in soybean crop. The use of resistant cultivars is the main strategy to reduce losses caused by the pathogen. This study aims to identify SNP markers associated with genes or QTLs that provide soybean with partial resistance to Phytophthora sojae. A total of 169 soybean cultivars were inoculated with Phytophthora sojae and genotyped with 3,807 SNP markers. Genome-wide association analysis was carried out via multiple linear models, followed by multiple linear regression and linkage disequilibrium analysis. Four QTLs associated with the characteristic were identified: two on chromosome 3 and two on chromosome 15. The regions containing these QTLs contain genes already annotated as providers of resistance to pathogens, in plants. The use of those markers in the selection of resistant plants can increase the efficiency of breeding programs in the development of soybean varieties resistant to P. sojae. |
publishDate |
2019 |
dc.date.accessioned.fl_str_mv |
2019-06-07T13:58:30Z |
dc.date.available.fl_str_mv |
2019-06-07T13:58:30Z |
dc.date.issued.fl_str_mv |
2019-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1590/1984-70332019v19n1a05 http://locus.ufv.br//handle/123456789/25738 |
dc.identifier.issn.none.fl_str_mv |
19847033 |
identifier_str_mv |
19847033 |
url |
http://dx.doi.org/10.1590/1984-70332019v19n1a05 http://locus.ufv.br//handle/123456789/25738 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofseries.pt-BR.fl_str_mv |
v. 19, n. 01, p. 31- 39, jan./ mar. 2019 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Crop Breeding and Applied Biotechnology |
publisher.none.fl_str_mv |
Crop Breeding and Applied Biotechnology |
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reponame:LOCUS Repositório Institucional da UFV instname:Universidade Federal de Viçosa (UFV) instacron:UFV |
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UFV |
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LOCUS Repositório Institucional da UFV |
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LOCUS Repositório Institucional da UFV |
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