Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | LOCUS Repositório Institucional da UFV |
Texto Completo: | https://doi.org/10.1007/s00705-018-3924-5 http://www.locus.ufv.br/handle/123456789/22842 |
Resumo: | Gemycircularviruses (genus Gemycircularvirus, family Genomoviridae) are single-stranded DNA viruses that are spread around the world in association with several organisms and environments. In this work, we identified two gemycircularviruses associated with two non-cultivated plants in Brazil, Momordica charantia and Euphorbia heterophylla. Both viruses display the general genome structure of gemycircularviruses. The virus isolated from M. charantia showed the highest nucleotide sequence identity with Pteropus associated gemycircularvirus 5, and an atypical structure consisting of a hairpin embedded in the major stem-loop was observed in the intergenic region. The virus from E. heterophylla showed the highest nucleotide sequence identity with Odonata associated gemycircularvirus 1. Phylogenetic analysis groups the two new viruses together with other genomoviruses of the genus Gemycircularvirus. |
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Rezende, Rafael Reis deMar, Talita BernardonPáez, Lina Marcela CortésXavier, André da SilvaXavier, César Augusto DinizZerbini, Francisco MuriloZerbini, Poliane AlfenasCastillo, Jesús Navas2018-12-18T14:27:12Z2018-12-18T14:27:12Z2018-111432-8798https://doi.org/10.1007/s00705-018-3924-5http://www.locus.ufv.br/handle/123456789/22842Gemycircularviruses (genus Gemycircularvirus, family Genomoviridae) are single-stranded DNA viruses that are spread around the world in association with several organisms and environments. In this work, we identified two gemycircularviruses associated with two non-cultivated plants in Brazil, Momordica charantia and Euphorbia heterophylla. Both viruses display the general genome structure of gemycircularviruses. The virus isolated from M. charantia showed the highest nucleotide sequence identity with Pteropus associated gemycircularvirus 5, and an atypical structure consisting of a hairpin embedded in the major stem-loop was observed in the intergenic region. The virus from E. heterophylla showed the highest nucleotide sequence identity with Odonata associated gemycircularvirus 1. Phylogenetic analysis groups the two new viruses together with other genomoviruses of the genus Gemycircularvirus.engArchives of VirologyVolume 163, Issue 11, Pages 3163–3166, November 2018Springer Viennainfo:eu-repo/semantics/openAccessGemycircularvirusesMomordica charantiaEuphorbia heterophyllaPhylogeneticComplete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazilinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdfTexto completoapplication/pdf3702003https://locus.ufv.br//bitstream/123456789/22842/1/artigo.pdf193e357a61a118fba1eb761ea7bc414aMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/22842/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/228422018-12-18 11:28:52.722oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452018-12-18T14:28:52LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
dc.title.en.fl_str_mv |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil |
title |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil |
spellingShingle |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil Rezende, Rafael Reis de Gemycircularviruses Momordica charantia Euphorbia heterophylla Phylogenetic |
title_short |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil |
title_full |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil |
title_fullStr |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil |
title_full_unstemmed |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil |
title_sort |
Complete genome sequences of two gemycircularviruses associated with non-cultivated plants in Brazil |
author |
Rezende, Rafael Reis de |
author_facet |
Rezende, Rafael Reis de Mar, Talita Bernardon Páez, Lina Marcela Cortés Xavier, André da Silva Xavier, César Augusto Diniz Zerbini, Francisco Murilo Zerbini, Poliane Alfenas Castillo, Jesús Navas |
author_role |
author |
author2 |
Mar, Talita Bernardon Páez, Lina Marcela Cortés Xavier, André da Silva Xavier, César Augusto Diniz Zerbini, Francisco Murilo Zerbini, Poliane Alfenas Castillo, Jesús Navas |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Rezende, Rafael Reis de Mar, Talita Bernardon Páez, Lina Marcela Cortés Xavier, André da Silva Xavier, César Augusto Diniz Zerbini, Francisco Murilo Zerbini, Poliane Alfenas Castillo, Jesús Navas |
dc.subject.pt-BR.fl_str_mv |
Gemycircularviruses Momordica charantia Euphorbia heterophylla Phylogenetic |
topic |
Gemycircularviruses Momordica charantia Euphorbia heterophylla Phylogenetic |
description |
Gemycircularviruses (genus Gemycircularvirus, family Genomoviridae) are single-stranded DNA viruses that are spread around the world in association with several organisms and environments. In this work, we identified two gemycircularviruses associated with two non-cultivated plants in Brazil, Momordica charantia and Euphorbia heterophylla. Both viruses display the general genome structure of gemycircularviruses. The virus isolated from M. charantia showed the highest nucleotide sequence identity with Pteropus associated gemycircularvirus 5, and an atypical structure consisting of a hairpin embedded in the major stem-loop was observed in the intergenic region. The virus from E. heterophylla showed the highest nucleotide sequence identity with Odonata associated gemycircularvirus 1. Phylogenetic analysis groups the two new viruses together with other genomoviruses of the genus Gemycircularvirus. |
publishDate |
2018 |
dc.date.accessioned.fl_str_mv |
2018-12-18T14:27:12Z |
dc.date.available.fl_str_mv |
2018-12-18T14:27:12Z |
dc.date.issued.fl_str_mv |
2018-11 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://doi.org/10.1007/s00705-018-3924-5 http://www.locus.ufv.br/handle/123456789/22842 |
dc.identifier.issn.none.fl_str_mv |
1432-8798 |
identifier_str_mv |
1432-8798 |
url |
https://doi.org/10.1007/s00705-018-3924-5 http://www.locus.ufv.br/handle/123456789/22842 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofseries.pt-BR.fl_str_mv |
Volume 163, Issue 11, Pages 3163–3166, November 2018 |
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Springer Vienna info:eu-repo/semantics/openAccess |
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Springer Vienna |
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openAccess |
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Archives of Virology |
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Archives of Virology |
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