Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil

Detalhes bibliográficos
Autor(a) principal: Mendes, Wanderson de Sousa
Data de Publicação: 2020
Outros Autores: Boechat, Cácio Luiz, Gualberto, Adriano Venicius Santana, Barbosa, Ronny Sobreira, Silva, Yuri Jacques Agra Bezerra da, Saraiva, Paloma Cunha, Sena, Antonny Francisco Sampaio de, Duarte, Lizandra de Sousa Luz
Tipo de documento: Artigo
Idioma: eng
Título da fonte: LOCUS Repositório Institucional da UFV
Texto Completo: https://locus.ufv.br//handle/123456789/29841
Resumo: Soil chemical and physical analyses are the major sources of data for agriculture. However, traditional soil analyses are time-consuming, not cost-efficient, and not environmentally friendly. An alternative to traditional soil analyses is soil spectroscopy. This technique is a low-cost and quick analytical method, which can be implemented in a laboratory and/or in-situ. Nevertheless, some spectrometers are expensive and do not contemplate the entire spectrum. Despite this limitation, the main objective of the study was to create a soil spectral library of the Piauí State using only the 1000–2500 nm range. In this sense, it was evaluated and standardized the soil spectral library by accessing the combination of smoothing, standard normal variate, continuum removal, and Savitzky-Golay derivative spectral preprocessing procedures with partial least squares, random forest, and cubist machine learning algorithms. It was collected 262 geo-referenced soil samples at the layer of 0.00–0.20 m across the entire Piauí State, representing most of its soil variability. The soil properties evaluated were pH(H 2 O), sand, clay, and soil organic carbon (SOC) contents. This study demonstrated that the Standard Normal Variate was one of the most promising preprocessing procedures to improve model predictions for pH(H 2 O), sand, and clay. For SOC and pH, the best overall results were without preprocessing the soil spectra. Moreover, the cubist model was the most accurate in predicting soil properties. Finally, our study showed evidence of the potential and feasibility of using this soil spectral library to estimate soil properties such as pH(H 2 O), sand, clay, and SOC.
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spelling Mendes, Wanderson de SousaBoechat, Cácio LuizGualberto, Adriano Venicius SantanaBarbosa, Ronny SobreiraSilva, Yuri Jacques Agra Bezerra daSaraiva, Paloma CunhaSena, Antonny Francisco Sampaio deDuarte, Lizandra de Sousa Luz2022-09-05T12:48:29Z2022-09-05T12:48:29Z2020-12-14Mendes WS, Boechat CL, Gualberto AVS, Barbosa RS, Silva YJAB, Saraiva PC, Sena AFS, Duarte LSL. Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil. Rev Bras Cienc Solo. 2021;45:e0200115.1806-9657https://locus.ufv.br//handle/123456789/29841Soil chemical and physical analyses are the major sources of data for agriculture. However, traditional soil analyses are time-consuming, not cost-efficient, and not environmentally friendly. An alternative to traditional soil analyses is soil spectroscopy. This technique is a low-cost and quick analytical method, which can be implemented in a laboratory and/or in-situ. Nevertheless, some spectrometers are expensive and do not contemplate the entire spectrum. Despite this limitation, the main objective of the study was to create a soil spectral library of the Piauí State using only the 1000–2500 nm range. In this sense, it was evaluated and standardized the soil spectral library by accessing the combination of smoothing, standard normal variate, continuum removal, and Savitzky-Golay derivative spectral preprocessing procedures with partial least squares, random forest, and cubist machine learning algorithms. It was collected 262 geo-referenced soil samples at the layer of 0.00–0.20 m across the entire Piauí State, representing most of its soil variability. The soil properties evaluated were pH(H 2 O), sand, clay, and soil organic carbon (SOC) contents. This study demonstrated that the Standard Normal Variate was one of the most promising preprocessing procedures to improve model predictions for pH(H 2 O), sand, and clay. For SOC and pH, the best overall results were without preprocessing the soil spectra. Moreover, the cubist model was the most accurate in predicting soil properties. Finally, our study showed evidence of the potential and feasibility of using this soil spectral library to estimate soil properties such as pH(H 2 O), sand, clay, and SOC.engRevista Brasileira de Ciência do SoloVol. 45, 2021.Creative Commons Attribution Licenseinfo:eu-repo/semantics/openAccesssoil spectroscopysoil predictionsshortwave infraredNIRSoil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazilinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlereponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdfTexto completoapplication/pdf2428381https://locus.ufv.br//bitstream/123456789/29841/1/artigo.pdf675a5b253f3d4caa0ffbbe5ccabe8dacMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/29841/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/298412022-09-05 09:48:29.578oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452022-09-05T12:48:29LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.en.fl_str_mv Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
title Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
spellingShingle Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
Mendes, Wanderson de Sousa
soil spectroscopy
soil predictions
shortwave infrared
NIR
title_short Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
title_full Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
title_fullStr Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
title_full_unstemmed Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
title_sort Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil
author Mendes, Wanderson de Sousa
author_facet Mendes, Wanderson de Sousa
Boechat, Cácio Luiz
Gualberto, Adriano Venicius Santana
Barbosa, Ronny Sobreira
Silva, Yuri Jacques Agra Bezerra da
Saraiva, Paloma Cunha
Sena, Antonny Francisco Sampaio de
Duarte, Lizandra de Sousa Luz
author_role author
author2 Boechat, Cácio Luiz
Gualberto, Adriano Venicius Santana
Barbosa, Ronny Sobreira
Silva, Yuri Jacques Agra Bezerra da
Saraiva, Paloma Cunha
Sena, Antonny Francisco Sampaio de
Duarte, Lizandra de Sousa Luz
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Mendes, Wanderson de Sousa
Boechat, Cácio Luiz
Gualberto, Adriano Venicius Santana
Barbosa, Ronny Sobreira
Silva, Yuri Jacques Agra Bezerra da
Saraiva, Paloma Cunha
Sena, Antonny Francisco Sampaio de
Duarte, Lizandra de Sousa Luz
dc.subject.eng.fl_str_mv soil spectroscopy
soil predictions
shortwave infrared
NIR
topic soil spectroscopy
soil predictions
shortwave infrared
NIR
description Soil chemical and physical analyses are the major sources of data for agriculture. However, traditional soil analyses are time-consuming, not cost-efficient, and not environmentally friendly. An alternative to traditional soil analyses is soil spectroscopy. This technique is a low-cost and quick analytical method, which can be implemented in a laboratory and/or in-situ. Nevertheless, some spectrometers are expensive and do not contemplate the entire spectrum. Despite this limitation, the main objective of the study was to create a soil spectral library of the Piauí State using only the 1000–2500 nm range. In this sense, it was evaluated and standardized the soil spectral library by accessing the combination of smoothing, standard normal variate, continuum removal, and Savitzky-Golay derivative spectral preprocessing procedures with partial least squares, random forest, and cubist machine learning algorithms. It was collected 262 geo-referenced soil samples at the layer of 0.00–0.20 m across the entire Piauí State, representing most of its soil variability. The soil properties evaluated were pH(H 2 O), sand, clay, and soil organic carbon (SOC) contents. This study demonstrated that the Standard Normal Variate was one of the most promising preprocessing procedures to improve model predictions for pH(H 2 O), sand, and clay. For SOC and pH, the best overall results were without preprocessing the soil spectra. Moreover, the cubist model was the most accurate in predicting soil properties. Finally, our study showed evidence of the potential and feasibility of using this soil spectral library to estimate soil properties such as pH(H 2 O), sand, clay, and SOC.
publishDate 2020
dc.date.issued.fl_str_mv 2020-12-14
dc.date.accessioned.fl_str_mv 2022-09-05T12:48:29Z
dc.date.available.fl_str_mv 2022-09-05T12:48:29Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.citation.fl_str_mv Mendes WS, Boechat CL, Gualberto AVS, Barbosa RS, Silva YJAB, Saraiva PC, Sena AFS, Duarte LSL. Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil. Rev Bras Cienc Solo. 2021;45:e0200115.
dc.identifier.uri.fl_str_mv https://locus.ufv.br//handle/123456789/29841
dc.identifier.issn.none.fl_str_mv 1806-9657
identifier_str_mv Mendes WS, Boechat CL, Gualberto AVS, Barbosa RS, Silva YJAB, Saraiva PC, Sena AFS, Duarte LSL. Soil spectral library of Piauí State using machine learning for laboratory analysis in Northeastern Brazil. Rev Bras Cienc Solo. 2021;45:e0200115.
1806-9657
url https://locus.ufv.br//handle/123456789/29841
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartofseries.pt-BR.fl_str_mv Vol. 45, 2021.
dc.rights.driver.fl_str_mv Creative Commons Attribution License
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rights_invalid_str_mv Creative Commons Attribution License
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Revista Brasileira de Ciência do Solo
publisher.none.fl_str_mv Revista Brasileira de Ciência do Solo
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