Marker-assisted selection and protein identification in Eucalyptus
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2022 |
| Outros Autores: | , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Research, Society and Development |
| Texto Completo: | https://rsdjournal.org/index.php/rsd/article/view/29227 |
Resumo: | Marker-assisted selection aims to improve quantitative traits in Eucalyptus, and molecular markers allow the identification of (the expression) of challenging alleles. Aiming to overcome this challenge our work presents a systematic review of the use of marker-assisted selection and candidate proteins to identify markers associated with traits of Eucalyptus. The research carried out a prospection of content obtained by keywords in the scientific databases Scopus and Web of Science. The bibliographic data generated was imported using the Bibliometrix package in R software. The nucleic acid sequences were prospected in the Genetic Sequence Database – GenBank. The proteins were prospected in UNIPROT and the 3D structures were obtained at the Swiss Bioinformatics Institute - SIB. The prospection resulted in 63 scientific articles after duplicates were removed, from 41 journals, with an average publication of 12.4 articles per year and an average of 25.2 citations per document. China and Brazil stand out in the number of publications. RAPD technique was the most used in studies to obtain alleles with traits of interest in Eucalyptus. The ISSR and SSR markers were highlighted for studies on genotype resistance. The sequences associated with resistance to galling organisms in Eucalyptus are related to TAC1 transcription regulatory proteins, mediator 2; zinc finger protein 11, associated with the expressed genes TAC1, At5g64680, and ZFP11. |
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Marker-assisted selection and protein identification in EucalyptusSelección asistida por marcadores e identificación de proteínas en EucalyptusSeleção assistida por marcadores e identificação de proteínas em EucalyptusBibliometriaMelhoramento florestalSAMEnsino.BibliometríaMejora forestalSAMEnseñanza.BibliometricsForest improvementMASTeaching.Marker-assisted selection aims to improve quantitative traits in Eucalyptus, and molecular markers allow the identification of (the expression) of challenging alleles. Aiming to overcome this challenge our work presents a systematic review of the use of marker-assisted selection and candidate proteins to identify markers associated with traits of Eucalyptus. The research carried out a prospection of content obtained by keywords in the scientific databases Scopus and Web of Science. The bibliographic data generated was imported using the Bibliometrix package in R software. The nucleic acid sequences were prospected in the Genetic Sequence Database – GenBank. The proteins were prospected in UNIPROT and the 3D structures were obtained at the Swiss Bioinformatics Institute - SIB. The prospection resulted in 63 scientific articles after duplicates were removed, from 41 journals, with an average publication of 12.4 articles per year and an average of 25.2 citations per document. China and Brazil stand out in the number of publications. RAPD technique was the most used in studies to obtain alleles with traits of interest in Eucalyptus. The ISSR and SSR markers were highlighted for studies on genotype resistance. The sequences associated with resistance to galling organisms in Eucalyptus are related to TAC1 transcription regulatory proteins, mediator 2; zinc finger protein 11, associated with the expressed genes TAC1, At5g64680, and ZFP11.La selección asistida por marcadores tiene como objetivo mejorar los rasgos cuantitativos en Eucalyptus, y los marcadores moleculares permiten la identificación (la expresión) de alelos desafiantes. Con el objetivo de superar este desafío, nuestro trabajo presenta una revisión sistemática en el uso de selección asistida por marcadores y proteínas candidatas para identificar marcadores asociados con rasgos de Eucalyptus. La investigación se llevó a cabo una prospección de contenido obtenido por palabras clave en las bases de datos científicas Scopus y Web of Science. Los datos bibliográficos generados fueron importados utilizando el paquete Bibliometrix en el software R. Las secuencias de ácidos nucleicos fueron prospectadas en la Base de Datos de Secuencias Genéticas – GenBank. Las proteínas fueron prospectadas en UNIPROT y las estructuras 3D fueron obtenidas en el Swiss Bioinformatics Institute - SIB. La prospección resultó en 63 artículos científicos después de la eliminación de duplicados, de 41 revistas, con una publicación promedio de 12,4 artículos por año y un promedio de 25,2 citas por documento. China y Brasil se destacan en el número de publicaciones. La técnica RAPD fue la más utilizada en los estudios para obtener alelos con caracteres de interés en Eucalyptus. Se destacaron los marcadores ISSR y SSR para estudios de resistencia de genotipos. Las secuencias asociadas con la resistencia a los organismos irritantes en Eucalyptus están relacionadas con las proteínas reguladoras de la transcripción TAC1, mediador 2; proteína con dedos de zinc 11, asociada con los genes expresados TAC1, At5g64680 y ZFP11.A seleção assistida por marcadores visa melhorar características quantitativas em Eucalyptus, e marcadores moleculares permitem a localização de alelos com expressão de difícil identificação. Assim, apresenta-se uma revisão sistemática de artigos científicos relacionados ao uso de seleção assistida por marcadores e realiza-se a prospecção de proteínas candidatas a marcadores associados a características de interesse econômico em espécies do gênero Eucalyptus. A pesquisa foi realizada a partir da prospecção de conteúdos obtidos por palavras-chaves nas bases científicas Scopus e Web of Science. Os dados bibliográficos gerados foram importados utilizando o pacote Bibliometrix no software R. As sequências de ácidos nucleicos foram prospectadas no Genetic Sequence Database – GenBank, e as proteínas foram prospectadas no UNIPROT, e no Instituto Suíço de Bioinformática - SIB foram obtidas as estruturas 3D das proteínas. Foram prospectados 74 artigos científicos, dos quais foram retiradas as duplicatas, totalizando 63 documentos de 41 revistas, com publicação média de 12,4 artigos por ano e média de 25,2 citações por documento. A China e o Brasil se destacam em número de publicações. A técnica de RAPD foi a mais utilizada em estudos para obtenção de alelos com características de interesse em Eucalyptus. Os marcadores ISSR e SSR foram destaques para genótipos resistentes a pragas e doenças. As sequências associadas a resistência a organismos galhadores em Eucalyptus estão relacionadas a proteínas reguladoras de transcrição TAC1, proteínas associadas ao mediador 2, proteína de dedo de zinco 11, as quais estão associadas aos genes expressos TAC1, At5g64680 e ZFP11.Research, Society and Development2022-05-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://rsdjournal.org/index.php/rsd/article/view/2922710.33448/rsd-v11i6.29227Research, Society and Development; Vol. 11 No. 6; e45311629227Research, Society and Development; Vol. 11 Núm. 6; e45311629227Research, Society and Development; v. 11 n. 6; e453116292272525-3409reponame:Research, Society and Developmentinstname:Universidade Federal de Itajubá (UNIFEI)instacron:UNIFEIenghttps://rsdjournal.org/index.php/rsd/article/view/29227/25392Copyright (c) 2022 Crislaine Costa Calazans; Valdinete Vieira Nunes; Juliana Lopes Souza; Natali Aparecida Santana; Fernanda Evangelista de Almeida; Renata Silva-Mannhttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessCalazans, Crislaine CostaNunes, Valdinete Vieira Souza, Juliana LopesSantana, Natali AparecidaAlmeida, Fernanda Evangelista de Silva-Mann, Renata2022-05-13T18:04:10Zoai:ojs.pkp.sfu.ca:article/29227Revistahttps://rsdjournal.org/index.php/rsd/indexPUBhttps://rsdjournal.org/index.php/rsd/oairsd.articles@gmail.com2525-34092525-3409opendoar:2024-01-17T09:46:22.639386Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)false |
| dc.title.none.fl_str_mv |
Marker-assisted selection and protein identification in Eucalyptus Selección asistida por marcadores e identificación de proteínas en Eucalyptus Seleção assistida por marcadores e identificação de proteínas em Eucalyptus |
| title |
Marker-assisted selection and protein identification in Eucalyptus |
| spellingShingle |
Marker-assisted selection and protein identification in Eucalyptus Calazans, Crislaine Costa Bibliometria Melhoramento florestal SAM Ensino. Bibliometría Mejora forestal SAM Enseñanza. Bibliometrics Forest improvement MAS Teaching. |
| title_short |
Marker-assisted selection and protein identification in Eucalyptus |
| title_full |
Marker-assisted selection and protein identification in Eucalyptus |
| title_fullStr |
Marker-assisted selection and protein identification in Eucalyptus |
| title_full_unstemmed |
Marker-assisted selection and protein identification in Eucalyptus |
| title_sort |
Marker-assisted selection and protein identification in Eucalyptus |
| author |
Calazans, Crislaine Costa |
| author_facet |
Calazans, Crislaine Costa Nunes, Valdinete Vieira Souza, Juliana Lopes Santana, Natali Aparecida Almeida, Fernanda Evangelista de Silva-Mann, Renata |
| author_role |
author |
| author2 |
Nunes, Valdinete Vieira Souza, Juliana Lopes Santana, Natali Aparecida Almeida, Fernanda Evangelista de Silva-Mann, Renata |
| author2_role |
author author author author author |
| dc.contributor.author.fl_str_mv |
Calazans, Crislaine Costa Nunes, Valdinete Vieira Souza, Juliana Lopes Santana, Natali Aparecida Almeida, Fernanda Evangelista de Silva-Mann, Renata |
| dc.subject.por.fl_str_mv |
Bibliometria Melhoramento florestal SAM Ensino. Bibliometría Mejora forestal SAM Enseñanza. Bibliometrics Forest improvement MAS Teaching. |
| topic |
Bibliometria Melhoramento florestal SAM Ensino. Bibliometría Mejora forestal SAM Enseñanza. Bibliometrics Forest improvement MAS Teaching. |
| description |
Marker-assisted selection aims to improve quantitative traits in Eucalyptus, and molecular markers allow the identification of (the expression) of challenging alleles. Aiming to overcome this challenge our work presents a systematic review of the use of marker-assisted selection and candidate proteins to identify markers associated with traits of Eucalyptus. The research carried out a prospection of content obtained by keywords in the scientific databases Scopus and Web of Science. The bibliographic data generated was imported using the Bibliometrix package in R software. The nucleic acid sequences were prospected in the Genetic Sequence Database – GenBank. The proteins were prospected in UNIPROT and the 3D structures were obtained at the Swiss Bioinformatics Institute - SIB. The prospection resulted in 63 scientific articles after duplicates were removed, from 41 journals, with an average publication of 12.4 articles per year and an average of 25.2 citations per document. China and Brazil stand out in the number of publications. RAPD technique was the most used in studies to obtain alleles with traits of interest in Eucalyptus. The ISSR and SSR markers were highlighted for studies on genotype resistance. The sequences associated with resistance to galling organisms in Eucalyptus are related to TAC1 transcription regulatory proteins, mediator 2; zinc finger protein 11, associated with the expressed genes TAC1, At5g64680, and ZFP11. |
| publishDate |
2022 |
| dc.date.none.fl_str_mv |
2022-05-03 |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
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article |
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publishedVersion |
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https://rsdjournal.org/index.php/rsd/article/view/29227 10.33448/rsd-v11i6.29227 |
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https://rsdjournal.org/index.php/rsd/article/view/29227 |
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10.33448/rsd-v11i6.29227 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
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https://rsdjournal.org/index.php/rsd/article/view/29227/25392 |
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https://creativecommons.org/licenses/by/4.0 info:eu-repo/semantics/openAccess |
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https://creativecommons.org/licenses/by/4.0 |
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openAccess |
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application/pdf |
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Research, Society and Development |
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Research, Society and Development |
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Research, Society and Development; Vol. 11 No. 6; e45311629227 Research, Society and Development; Vol. 11 Núm. 6; e45311629227 Research, Society and Development; v. 11 n. 6; e45311629227 2525-3409 reponame:Research, Society and Development instname:Universidade Federal de Itajubá (UNIFEI) instacron:UNIFEI |
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Universidade Federal de Itajubá (UNIFEI) |
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UNIFEI |
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UNIFEI |
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Research, Society and Development |
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Research, Society and Development |
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Research, Society and Development - Universidade Federal de Itajubá (UNIFEI) |
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