Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples

Detalhes bibliográficos
Autor(a) principal: Dietz, Jefferson do Carmo
Data de Publicação: 2021
Outros Autores: Borges, Marielly Sousa, Alves, Sueli Lemes de Ávila, Dias, Disley Xavier Rodrigues, Manrique, Edna Joana Cláudio
Tipo de documento: Artigo
Idioma: por
Título da fonte: Research, Society and Development
Texto Completo: https://rsdjournal.org/index.php/rsd/article/view/16533
Resumo: Objective: To evaluate the diagnostic performance of Xpert® MTB/RIF in the state of Goiás, Brazil. Methodology: Cross-sectional study based on records filed in the Mycobacteria Section of a reference laboratory in the diagnosis of diseases of interest in public health in the state of Goiás. Data were collected on samples linked to suspected cases of tuberculosis processed in the period between October 2017 and October 2018. Pulmonary and extrapulmonary samples that presented Xpert® MTB/RIF results and culture were included in the study. The information collected was used to compose a database with the following variables: clinical specimen, result of Xpert® MTB/RIF, result of culture and type of culture (solid or liquid). For calculating sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV), growth in culture was taken as a reference. Results: 3262 samples were eligible for the study, 3068 of pulmonary origin (94.1%) and 194 of extrapulmonary origin (5.9%). The Xpert® MTB/RIF showed general sensitivity and specificity of 87.1% and 97.6% for samples of pulmonary origin and 80.0% and 97.3% for samples of extrapulmonary origin. The test performance varied according to the clinical sample and the type of culture taken as a reference. Conclusion: The Xpert® MTB/RIF test demonstrated in the present study to be an important diagnostic tool for cases of tuberculosis in both pulmonary and extrapulmonary samples, with good sensitivity and specificity. The results, as with any other methodology, should be interpreted with caution and based on the association of clinical, epidemiological and laboratory criteria.
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spelling Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samplesRendimiento del test Xpert® MTB/RIF en la detección de laboratorio de tuberculosis en muestras pulmonares y extrapulmonaresDesempenho do teste Xpert® MTB/RIF na detecção laboratorial de tuberculose em amostras pulmonares e extrapulmonares TuberculosisTécnicas de diagnóstico molecularDiagnóstico precoz.TuberculoseTécnicas de diagnóstico molecularDiagnóstico precoce.TuberculosisMolecular diagnostic techniquesEarly diagnosis.Objective: To evaluate the diagnostic performance of Xpert® MTB/RIF in the state of Goiás, Brazil. Methodology: Cross-sectional study based on records filed in the Mycobacteria Section of a reference laboratory in the diagnosis of diseases of interest in public health in the state of Goiás. Data were collected on samples linked to suspected cases of tuberculosis processed in the period between October 2017 and October 2018. Pulmonary and extrapulmonary samples that presented Xpert® MTB/RIF results and culture were included in the study. The information collected was used to compose a database with the following variables: clinical specimen, result of Xpert® MTB/RIF, result of culture and type of culture (solid or liquid). For calculating sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV), growth in culture was taken as a reference. Results: 3262 samples were eligible for the study, 3068 of pulmonary origin (94.1%) and 194 of extrapulmonary origin (5.9%). The Xpert® MTB/RIF showed general sensitivity and specificity of 87.1% and 97.6% for samples of pulmonary origin and 80.0% and 97.3% for samples of extrapulmonary origin. The test performance varied according to the clinical sample and the type of culture taken as a reference. Conclusion: The Xpert® MTB/RIF test demonstrated in the present study to be an important diagnostic tool for cases of tuberculosis in both pulmonary and extrapulmonary samples, with good sensitivity and specificity. The results, as with any other methodology, should be interpreted with caution and based on the association of clinical, epidemiological and laboratory criteria.Objetivo: Evaluar el desempeño diagnóstico de Xpert® MTB/RIF en el estado de Goiás, Brasil. Metodología: Estudio transversal a partir de registros archivados en la Sección de Micobacterias de un laboratorio de referencia en el diagnóstico de enfermedades de interés para la salud pública en el estado de Goiás. Se recolectaron datos sobre muestras vinculadas a casos sospechosos de tuberculosis procesados ​​en el período comprendido entre octubre de 2017 y octubre de 2018. Se incluyeron en el estudio muestras pulmonares y extrapulmonares que presentaron resultados de Xpert® MTB/RIF y cultivo. La información recolectada se utilizó para componer una base de datos con las siguientes variables: muestra clínica, resultado de Xpert® MTB/RIF, resultado de cultivo y tipo de cultivo (sólido o líquido). Para el cálculo de la sensibilidad, especificidad, valor predictivo positivo (VPP) y valor predictivo negativo (VPN), se tomó como referencia el crecimiento en cultivo. Resultados: 3262 muestras fueron elegibles para el estudio, 3068 de origen pulmonar (94,1%) y 194 de origen extrapulmonar (5,9%). El Xpert® MTB/RIF mostró una sensibilidad y especificidad general del 87,1% y 97,6% para muestras de origen pulmonar y del 80,0% y 97,3% para muestras de origen extrapulmonar. El rendimiento de la prueba varió según la muestra clínica y el tipo de cultivo tomado como referencia. Conclusión: La prueba Xpert® MTB/RIF demostró en el presente estudio ser una importante herramienta diagnóstica para casos de tuberculosis tanto en muestras pulmonares como extrapulmonares, con buena sensibilidad y especificidad. Los resultados, al igual que con cualquier otra metodología, deben interpretarse con cautela y basarse en la asociación de criterios clínicos, epidemiológicos y de laboratorio.Objetivo: Avaliar a performance diagnóstica do Xpert® MTB/RIF na realidade goiana. Metodologia: Estudo transversal formulado a partir de registros arquivados na Seção de Micobactérias de um laboratório referência no diagnóstico de agravos de interesse em saúde pública do Estado de Goiás, Brasil. Foram coletados dados referentes a amostras vinculadas a casos suspeitos de tuberculose processadas no período compreendido entre outubro de 2017 e outubro de 2018. Incluiu-se no estudo amostras pulmonares e extrapulmonares que apresentavam resultados de Xpert® MTB/RIF e cultura. As informações coletadas foram utilizadas para composição de um banco de dados com as seguintes variáveis: espécime clínico, resultado do Xpert® MTB/RIF, resultado da cultura e tipo de cultura (sólida ou líquida). Para cálculo de sensibilidade, especificidade, valor preditivo positivo (VPP) e valor preditivo negativo (VPN), o crescimento em cultura foi tido como referência. Resultados: Foram elegíveis para o estudo 3262 amostras, 3068 de origem pulmonar (94,1%) e 194 de origem extrapulmonar (5,9%). O Xpert® MTB/RIF mostrou sensibilidade e especificidade geral de 87,1% e 97,6% para amostras de origem pulmonar e 80,0% e 97,3% para amostras de origem extrapulmonar. O desempenho do teste variou de acordo com a amostra clínica e o tipo de cultura tomada como referência. Conclusão: O teste Xpert® MTB/RIF demonstrou no presente estudo ser uma importante ferramenta diagnóstica para casos de tuberculose tanto em amostras pulmonares quanto extrapulmonares, apresentando boa sensibilidade e especificidade. Os resultados, como de qualquer outra metodologia, devem ser interpretados com cautela e baseados na associação de critérios clínicos, epidemiológicos e laboratoriais.Research, Society and Development2021-06-24info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://rsdjournal.org/index.php/rsd/article/view/1653310.33448/rsd-v10i7.16533Research, Society and Development; Vol. 10 No. 7; e36610716533Research, Society and Development; Vol. 10 Núm. 7; e36610716533Research, Society and Development; v. 10 n. 7; e366107165332525-3409reponame:Research, Society and Developmentinstname:Universidade Federal de Itajubá (UNIFEI)instacron:UNIFEIporhttps://rsdjournal.org/index.php/rsd/article/view/16533/14891Copyright (c) 2021 Jefferson do Carmo Dietz; Marielly Sousa Borges; Sueli Lemes de Ávila Alves; Disley Xavier Rodrigues Dias; Edna Joana Cláudio Manriquehttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessDietz, Jefferson do CarmoBorges, Marielly SousaAlves, Sueli Lemes de ÁvilaDias, Disley Xavier RodriguesManrique, Edna Joana Cláudio2021-07-18T21:07:03Zoai:ojs.pkp.sfu.ca:article/16533Revistahttps://rsdjournal.org/index.php/rsd/indexPUBhttps://rsdjournal.org/index.php/rsd/oairsd.articles@gmail.com2525-34092525-3409opendoar:2024-01-17T09:37:03.545194Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)false
dc.title.none.fl_str_mv Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
Rendimiento del test Xpert® MTB/RIF en la detección de laboratorio de tuberculosis en muestras pulmonares y extrapulmonares
Desempenho do teste Xpert® MTB/RIF na detecção laboratorial de tuberculose em amostras pulmonares e extrapulmonares
title Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
spellingShingle Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
Dietz, Jefferson do Carmo
Tuberculosis
Técnicas de diagnóstico molecular
Diagnóstico precoz.
Tuberculose
Técnicas de diagnóstico molecular
Diagnóstico precoce.
Tuberculosis
Molecular diagnostic techniques
Early diagnosis.
title_short Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
title_full Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
title_fullStr Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
title_full_unstemmed Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
title_sort Performance of the Xpert® MTB/RIF test in the laboratory detection of tuberculosis in pulmonary and extrapulmonary samples
author Dietz, Jefferson do Carmo
author_facet Dietz, Jefferson do Carmo
Borges, Marielly Sousa
Alves, Sueli Lemes de Ávila
Dias, Disley Xavier Rodrigues
Manrique, Edna Joana Cláudio
author_role author
author2 Borges, Marielly Sousa
Alves, Sueli Lemes de Ávila
Dias, Disley Xavier Rodrigues
Manrique, Edna Joana Cláudio
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Dietz, Jefferson do Carmo
Borges, Marielly Sousa
Alves, Sueli Lemes de Ávila
Dias, Disley Xavier Rodrigues
Manrique, Edna Joana Cláudio
dc.subject.por.fl_str_mv Tuberculosis
Técnicas de diagnóstico molecular
Diagnóstico precoz.
Tuberculose
Técnicas de diagnóstico molecular
Diagnóstico precoce.
Tuberculosis
Molecular diagnostic techniques
Early diagnosis.
topic Tuberculosis
Técnicas de diagnóstico molecular
Diagnóstico precoz.
Tuberculose
Técnicas de diagnóstico molecular
Diagnóstico precoce.
Tuberculosis
Molecular diagnostic techniques
Early diagnosis.
description Objective: To evaluate the diagnostic performance of Xpert® MTB/RIF in the state of Goiás, Brazil. Methodology: Cross-sectional study based on records filed in the Mycobacteria Section of a reference laboratory in the diagnosis of diseases of interest in public health in the state of Goiás. Data were collected on samples linked to suspected cases of tuberculosis processed in the period between October 2017 and October 2018. Pulmonary and extrapulmonary samples that presented Xpert® MTB/RIF results and culture were included in the study. The information collected was used to compose a database with the following variables: clinical specimen, result of Xpert® MTB/RIF, result of culture and type of culture (solid or liquid). For calculating sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV), growth in culture was taken as a reference. Results: 3262 samples were eligible for the study, 3068 of pulmonary origin (94.1%) and 194 of extrapulmonary origin (5.9%). The Xpert® MTB/RIF showed general sensitivity and specificity of 87.1% and 97.6% for samples of pulmonary origin and 80.0% and 97.3% for samples of extrapulmonary origin. The test performance varied according to the clinical sample and the type of culture taken as a reference. Conclusion: The Xpert® MTB/RIF test demonstrated in the present study to be an important diagnostic tool for cases of tuberculosis in both pulmonary and extrapulmonary samples, with good sensitivity and specificity. The results, as with any other methodology, should be interpreted with caution and based on the association of clinical, epidemiological and laboratory criteria.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-24
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/16533
10.33448/rsd-v10i7.16533
url https://rsdjournal.org/index.php/rsd/article/view/16533
identifier_str_mv 10.33448/rsd-v10i7.16533
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/16533/14891
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Research, Society and Development
publisher.none.fl_str_mv Research, Society and Development
dc.source.none.fl_str_mv Research, Society and Development; Vol. 10 No. 7; e36610716533
Research, Society and Development; Vol. 10 Núm. 7; e36610716533
Research, Society and Development; v. 10 n. 7; e36610716533
2525-3409
reponame:Research, Society and Development
instname:Universidade Federal de Itajubá (UNIFEI)
instacron:UNIFEI
instname_str Universidade Federal de Itajubá (UNIFEI)
instacron_str UNIFEI
institution UNIFEI
reponame_str Research, Society and Development
collection Research, Society and Development
repository.name.fl_str_mv Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)
repository.mail.fl_str_mv rsd.articles@gmail.com
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