Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes

Detalhes bibliográficos
Autor(a) principal: Palacios-Gimenez, Octavio M. [UNESP]
Data de Publicação: 2015
Outros Autores: Carvalho, Carlos Roberto, Ferrari Soares, Fernanda Aparecida, Cabral-De-Mello Cabral-de-mello, Diogo C. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0143540
http://hdl.handle.net/11449/168325
Resumo: A large percentage of eukaryotic genomes consist of repetitive DNA that plays an important role in the organization, size and evolution. In the case of crickets, chromosomal variability has been found using classical cytogenetics, but almost no information concerning the organization of their repetitive DNAs is available. To better understand the chromosomal organization and diversification of repetitive DNAs in crickets, we studied the chromosomes of two Gryllidae species with highly divergent karyotypes, i.e., 2n(♂) = 29,X0 (Gryllus assimilis) and 2n = 9, neo-X1X2Y (Eneoptera surinamensis). The analyses were performed using classical cytogenetic techniques, repetitive DNA mapping and genome-size estimation. Conserved characteristics were observed, such as the occurrence of a small number of clusters of rDNAs and U snDNAs, in contrast to the multiple clusters/dispersal of the H3 histone genes. The positions of U2 snDNA and 18S rDNA are also conserved, being intermingled within the largest autosome. The distribution and base-pair composition of the heterochromatin and repetitive DNA pools of these organisms differed, suggesting reorganization. Although the microsatellite arrays had a similar distribution pattern, being dispersed along entire chromosomes, as has been observed in some grasshopper species, a band-like pattern was also observed in the E. surinamensis chromosomes, putatively due to their amplification and clustering. In addition to these differences, the genome of E. surinamensis is approximately 2.5 times larger than that of G. assimilis, which we hypothesize is due to the amplification of repetitive DNAs. Finally, we discuss the possible involvement of repetitive DNAs in the differentiation of the neo-sex chromosomes of E. surinamensis, as has been reported in other eukaryotic groups. This study provided an opportunity to explore the evolutionary dynamics of repetitive DNAs in two non-model species and will contribute to the understanding of chromosomal evolution in a group about which little chromosomal and genomic information is known.
id UNSP_094f6b739de8f2c0c1cbfafee1c60c9d
oai_identifier_str oai:repositorio.unesp.br:11449/168325
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypesA large percentage of eukaryotic genomes consist of repetitive DNA that plays an important role in the organization, size and evolution. In the case of crickets, chromosomal variability has been found using classical cytogenetics, but almost no information concerning the organization of their repetitive DNAs is available. To better understand the chromosomal organization and diversification of repetitive DNAs in crickets, we studied the chromosomes of two Gryllidae species with highly divergent karyotypes, i.e., 2n(♂) = 29,X0 (Gryllus assimilis) and 2n = 9, neo-X1X2Y (Eneoptera surinamensis). The analyses were performed using classical cytogenetic techniques, repetitive DNA mapping and genome-size estimation. Conserved characteristics were observed, such as the occurrence of a small number of clusters of rDNAs and U snDNAs, in contrast to the multiple clusters/dispersal of the H3 histone genes. The positions of U2 snDNA and 18S rDNA are also conserved, being intermingled within the largest autosome. The distribution and base-pair composition of the heterochromatin and repetitive DNA pools of these organisms differed, suggesting reorganization. Although the microsatellite arrays had a similar distribution pattern, being dispersed along entire chromosomes, as has been observed in some grasshopper species, a band-like pattern was also observed in the E. surinamensis chromosomes, putatively due to their amplification and clustering. In addition to these differences, the genome of E. surinamensis is approximately 2.5 times larger than that of G. assimilis, which we hypothesize is due to the amplification of repetitive DNAs. Finally, we discuss the possible involvement of repetitive DNAs in the differentiation of the neo-sex chromosomes of E. surinamensis, as has been reported in other eukaryotic groups. This study provided an opportunity to explore the evolutionary dynamics of repetitive DNAs in two non-model species and will contribute to the understanding of chromosomal evolution in a group about which little chromosomal and genomic information is known.UNESP - Univ. Estadual Paulista Instituto de Biociências/IB Departamento de BiologiaUFV-Univ. Federal de Viçosa Centro de Ciências Biológicas Departamento de Biologia GeralUNESP - Univ. Estadual Paulista Instituto de Biociências/IB Departamento de BiologiaUniversidade Estadual Paulista (Unesp)Universidade Federal de Viçosa (UFV)Palacios-Gimenez, Octavio M. [UNESP]Carvalho, Carlos RobertoFerrari Soares, Fernanda AparecidaCabral-De-Mello Cabral-de-mello, Diogo C. [UNESP]2018-12-11T16:40:47Z2018-12-11T16:40:47Z2015-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1371/journal.pone.0143540PLoS ONE, v. 10, n. 12, 2015.1932-6203http://hdl.handle.net/11449/16832510.1371/journal.pone.01435402-s2.0-849554865022-s2.0-84955486502.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS ONE1,164info:eu-repo/semantics/openAccess2023-11-08T06:12:24Zoai:repositorio.unesp.br:11449/168325Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-11-08T06:12:24Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
title Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
spellingShingle Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
Palacios-Gimenez, Octavio M. [UNESP]
title_short Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
title_full Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
title_fullStr Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
title_full_unstemmed Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
title_sort Contrasting the chromosomal organization of repetitive DNAs in two Gryllidae crickets with highly divergent karyotypes
author Palacios-Gimenez, Octavio M. [UNESP]
author_facet Palacios-Gimenez, Octavio M. [UNESP]
Carvalho, Carlos Roberto
Ferrari Soares, Fernanda Aparecida
Cabral-De-Mello Cabral-de-mello, Diogo C. [UNESP]
author_role author
author2 Carvalho, Carlos Roberto
Ferrari Soares, Fernanda Aparecida
Cabral-De-Mello Cabral-de-mello, Diogo C. [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Universidade Federal de Viçosa (UFV)
dc.contributor.author.fl_str_mv Palacios-Gimenez, Octavio M. [UNESP]
Carvalho, Carlos Roberto
Ferrari Soares, Fernanda Aparecida
Cabral-De-Mello Cabral-de-mello, Diogo C. [UNESP]
description A large percentage of eukaryotic genomes consist of repetitive DNA that plays an important role in the organization, size and evolution. In the case of crickets, chromosomal variability has been found using classical cytogenetics, but almost no information concerning the organization of their repetitive DNAs is available. To better understand the chromosomal organization and diversification of repetitive DNAs in crickets, we studied the chromosomes of two Gryllidae species with highly divergent karyotypes, i.e., 2n(♂) = 29,X0 (Gryllus assimilis) and 2n = 9, neo-X1X2Y (Eneoptera surinamensis). The analyses were performed using classical cytogenetic techniques, repetitive DNA mapping and genome-size estimation. Conserved characteristics were observed, such as the occurrence of a small number of clusters of rDNAs and U snDNAs, in contrast to the multiple clusters/dispersal of the H3 histone genes. The positions of U2 snDNA and 18S rDNA are also conserved, being intermingled within the largest autosome. The distribution and base-pair composition of the heterochromatin and repetitive DNA pools of these organisms differed, suggesting reorganization. Although the microsatellite arrays had a similar distribution pattern, being dispersed along entire chromosomes, as has been observed in some grasshopper species, a band-like pattern was also observed in the E. surinamensis chromosomes, putatively due to their amplification and clustering. In addition to these differences, the genome of E. surinamensis is approximately 2.5 times larger than that of G. assimilis, which we hypothesize is due to the amplification of repetitive DNAs. Finally, we discuss the possible involvement of repetitive DNAs in the differentiation of the neo-sex chromosomes of E. surinamensis, as has been reported in other eukaryotic groups. This study provided an opportunity to explore the evolutionary dynamics of repetitive DNAs in two non-model species and will contribute to the understanding of chromosomal evolution in a group about which little chromosomal and genomic information is known.
publishDate 2015
dc.date.none.fl_str_mv 2015-12-01
2018-12-11T16:40:47Z
2018-12-11T16:40:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0143540
PLoS ONE, v. 10, n. 12, 2015.
1932-6203
http://hdl.handle.net/11449/168325
10.1371/journal.pone.0143540
2-s2.0-84955486502
2-s2.0-84955486502.pdf
url http://dx.doi.org/10.1371/journal.pone.0143540
http://hdl.handle.net/11449/168325
identifier_str_mv PLoS ONE, v. 10, n. 12, 2015.
1932-6203
10.1371/journal.pone.0143540
2-s2.0-84955486502
2-s2.0-84955486502.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLoS ONE
1,164
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1803046382327562240