Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata
Autor(a) principal: | |
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Data de Publicação: | 2009 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | por |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://hdl.handle.net/11449/225724 |
Resumo: | Background: Comet assay or single cell gel electrophoresis is a useful and widely applied technique for the assessment of DNA damage and repair in individual cells. Nuclei can be stained with fluorescence methods or silver salts. The latter has technical advantages such as the type of microscope used and the possibility of slide storage. Comet analysis may be performed visually, however, there is the disadvantage of subjective results, which can be minimized by automated digital analysis. Objectives: Development and validation of digital analysis method for silver stained comet assays. Methods: Fifty comets were photographed in a standardized way and printed on paper. Before and after being automatically preprocessed by Imagej 1.38x software, the images were manually measured and classified into five categories by three evaluators. Their estimates were compared as to their correlation and reproducibility. Afterwards, an algorithm for automated digital analysis of the comet measurements was developed based on statistical filters of median and minimum. These results were compared with those manually and visually estimated after preprocessing. Results: Manual measurements of preprocessed images showed higher intraclass correlation than the original ones. Automated results had high correlation with the pre-processed manual measurements, suggesting that this system increases objectivity and can be used in the estimation of comet parameters. Conclusions: Digital analysis of silver stained comet assay proved to be feasible and better reproducible than the visual analysis. |
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Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prataDevelopment and validation of a quantitative image analysis method to evaluate comet assay (silver staining)Comet assayGenotoxicityImage analysisQuantitative methodBackground: Comet assay or single cell gel electrophoresis is a useful and widely applied technique for the assessment of DNA damage and repair in individual cells. Nuclei can be stained with fluorescence methods or silver salts. The latter has technical advantages such as the type of microscope used and the possibility of slide storage. Comet analysis may be performed visually, however, there is the disadvantage of subjective results, which can be minimized by automated digital analysis. Objectives: Development and validation of digital analysis method for silver stained comet assays. Methods: Fifty comets were photographed in a standardized way and printed on paper. Before and after being automatically preprocessed by Imagej 1.38x software, the images were manually measured and classified into five categories by three evaluators. Their estimates were compared as to their correlation and reproducibility. Afterwards, an algorithm for automated digital analysis of the comet measurements was developed based on statistical filters of median and minimum. These results were compared with those manually and visually estimated after preprocessing. Results: Manual measurements of preprocessed images showed higher intraclass correlation than the original ones. Automated results had high correlation with the pre-processed manual measurements, suggesting that this system increases objectivity and can be used in the estimation of comet parameters. Conclusions: Digital analysis of silver stained comet assay proved to be feasible and better reproducible than the visual analysis.Núcleo de Avaliação do Impacto Ambiental Sobre A Saúde Humana (TOXICAM) Departamento de Patologia Universidade Estadual Paulista (FMB/UNESP)Departamento de Patologia; Responsável Pelo TOXICAM Departamento de Patologia da FMB/UNESPDepartamento de Dermatologia e Radioterapia da FMB/UNESP Campus Universitário de Rublão Júnior, CEP. 18618-000-Botucatu-SPNúcleo de Avaliação do Impacto Ambiental Sobre A Saúde Humana (TOXICAM) Departamento de Patologia Universidade Estadual Paulista (FMB/UNESP)Departamento de Patologia; Responsável Pelo TOXICAM Departamento de Patologia da FMB/UNESPDepartamento de Dermatologia e Radioterapia da FMB/UNESP Campus Universitário de Rublão Júnior, CEP. 18618-000-Botucatu-SPUniversidade Estadual Paulista (UNESP)Brianezi, Gabrielli [UNESP]De Camargo, João Lauro Viana [UNESP]Miot, Hélio Amante [UNESP]2022-04-28T20:59:05Z2022-04-28T20:59:05Z2009-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article325-334Jornal Brasileiro de Patologia e Medicina Laboratorial, v. 45, n. 4, p. 325-334, 2009.1676-24441678-4774http://hdl.handle.net/11449/2257242-s2.0-73449104577Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPporJornal Brasileiro de Patologia e Medicina Laboratorialinfo:eu-repo/semantics/openAccess2024-09-03T13:14:31Zoai:repositorio.unesp.br:11449/225724Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-03T13:14:31Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata Development and validation of a quantitative image analysis method to evaluate comet assay (silver staining) |
title |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata |
spellingShingle |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata Brianezi, Gabrielli [UNESP] Comet assay Genotoxicity Image analysis Quantitative method |
title_short |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata |
title_full |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata |
title_fullStr |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata |
title_full_unstemmed |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata |
title_sort |
Desenvolvimento e validação de técnica quantitativa de análise de imagem para avaliação do teste do cometa corado pela prata |
author |
Brianezi, Gabrielli [UNESP] |
author_facet |
Brianezi, Gabrielli [UNESP] De Camargo, João Lauro Viana [UNESP] Miot, Hélio Amante [UNESP] |
author_role |
author |
author2 |
De Camargo, João Lauro Viana [UNESP] Miot, Hélio Amante [UNESP] |
author2_role |
author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) |
dc.contributor.author.fl_str_mv |
Brianezi, Gabrielli [UNESP] De Camargo, João Lauro Viana [UNESP] Miot, Hélio Amante [UNESP] |
dc.subject.por.fl_str_mv |
Comet assay Genotoxicity Image analysis Quantitative method |
topic |
Comet assay Genotoxicity Image analysis Quantitative method |
description |
Background: Comet assay or single cell gel electrophoresis is a useful and widely applied technique for the assessment of DNA damage and repair in individual cells. Nuclei can be stained with fluorescence methods or silver salts. The latter has technical advantages such as the type of microscope used and the possibility of slide storage. Comet analysis may be performed visually, however, there is the disadvantage of subjective results, which can be minimized by automated digital analysis. Objectives: Development and validation of digital analysis method for silver stained comet assays. Methods: Fifty comets were photographed in a standardized way and printed on paper. Before and after being automatically preprocessed by Imagej 1.38x software, the images were manually measured and classified into five categories by three evaluators. Their estimates were compared as to their correlation and reproducibility. Afterwards, an algorithm for automated digital analysis of the comet measurements was developed based on statistical filters of median and minimum. These results were compared with those manually and visually estimated after preprocessing. Results: Manual measurements of preprocessed images showed higher intraclass correlation than the original ones. Automated results had high correlation with the pre-processed manual measurements, suggesting that this system increases objectivity and can be used in the estimation of comet parameters. Conclusions: Digital analysis of silver stained comet assay proved to be feasible and better reproducible than the visual analysis. |
publishDate |
2009 |
dc.date.none.fl_str_mv |
2009-08-01 2022-04-28T20:59:05Z 2022-04-28T20:59:05Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Jornal Brasileiro de Patologia e Medicina Laboratorial, v. 45, n. 4, p. 325-334, 2009. 1676-2444 1678-4774 http://hdl.handle.net/11449/225724 2-s2.0-73449104577 |
identifier_str_mv |
Jornal Brasileiro de Patologia e Medicina Laboratorial, v. 45, n. 4, p. 325-334, 2009. 1676-2444 1678-4774 2-s2.0-73449104577 |
url |
http://hdl.handle.net/11449/225724 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.relation.none.fl_str_mv |
Jornal Brasileiro de Patologia e Medicina Laboratorial |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
325-334 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1810021363526664192 |