Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut

Detalhes bibliográficos
Autor(a) principal: Taleb, Víctor
Data de Publicação: 2022
Outros Autores: Liao, Qinghua, Narimatsu, Yoshiki, García-García, Ana, Compañón, Ismael, Borges, Rafael Junqueira [UNESP], González-Ramírez, Andrés Manuel, Corzana, Francisco, Clausen, Henrik, Rovira, Carme, Hurtado-Guerrero, Ramon
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/s41467-022-32021-9
http://hdl.handle.net/11449/240538
Resumo: Mucinases of human gut bacteria cleave peptide bonds in mucins strictly depending on the presence of neighboring O-glycans. The Akkermansia muciniphila AM0627 mucinase cleaves specifically in between contiguous (bis) O-glycans of defined truncated structures, suggesting that this enzyme may recognize clustered O-glycan patches. Here, we report the structure and molecular mechanism of AM0627 in complex with a glycopeptide containing a bis-T (Galβ1-3GalNAcα1-O-Ser/Thr) O-glycan, revealing that AM0627 recognizes both the sugar moieties and the peptide sequence. AM0627 exhibits preference for bis-T over bis-Tn (GalNAcα1-O-Ser/Thr) O-glycopeptide substrates, with the first GalNAc residue being essential for cleavage. AM0627 follows a mechanism relying on a nucleophilic water molecule and a catalytic base Glu residue. Structural comparison among mucinases identifies a conserved Tyr engaged in sugar-π interactions in both AM0627 and the Bacteroides thetaiotaomicron BT4244 mucinase as responsible for the common activity of these two mucinases with bis-T/Tn substrates. Our work illustrates how mucinases through tremendous flexibility adapt to the diversity in distribution and patterns of O-glycans on mucins.
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spelling Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gutMucinases of human gut bacteria cleave peptide bonds in mucins strictly depending on the presence of neighboring O-glycans. The Akkermansia muciniphila AM0627 mucinase cleaves specifically in between contiguous (bis) O-glycans of defined truncated structures, suggesting that this enzyme may recognize clustered O-glycan patches. Here, we report the structure and molecular mechanism of AM0627 in complex with a glycopeptide containing a bis-T (Galβ1-3GalNAcα1-O-Ser/Thr) O-glycan, revealing that AM0627 recognizes both the sugar moieties and the peptide sequence. AM0627 exhibits preference for bis-T over bis-Tn (GalNAcα1-O-Ser/Thr) O-glycopeptide substrates, with the first GalNAc residue being essential for cleavage. AM0627 follows a mechanism relying on a nucleophilic water molecule and a catalytic base Glu residue. Structural comparison among mucinases identifies a conserved Tyr engaged in sugar-π interactions in both AM0627 and the Bacteroides thetaiotaomicron BT4244 mucinase as responsible for the common activity of these two mucinases with bis-T/Tn substrates. Our work illustrates how mucinases through tremendous flexibility adapt to the diversity in distribution and patterns of O-glycans on mucins.Ministerio de Economía y CompetitividadInstitute of Biocomputation and Physics of Complex Systems University of Zaragoza, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+DDepartament de Química Inorgánica i Orgánica (Secció de Química Orgánica) and Institut de Química Teorica i Computacional (IQTCUB) Universitat de BarcelonaCopenhagen Center for Glycomics Department of Cellular and Molecular Medicine University of CopenhagenDepartamento de Química Universidad de La Rioja Centro de Investigación en Síntesis QuímicaDepartamento de Biofísica e Farmacologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Institució Catalana de Recerca i Estudis Avancats (ICREA)Fundación ARAIDDepartamento de Biofísica e Farmacologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Ministerio de Economía y Competitividad: PID2020-118893GB-I00University of ZaragozaUniversitat de BarcelonaUniversity of CopenhagenCentro de Investigación en Síntesis QuímicaUniversidade Estadual Paulista (UNESP)Institució Catalana de Recerca i Estudis Avancats (ICREA)Fundación ARAIDTaleb, VíctorLiao, QinghuaNarimatsu, YoshikiGarcía-García, AnaCompañón, IsmaelBorges, Rafael Junqueira [UNESP]González-Ramírez, Andrés ManuelCorzana, FranciscoClausen, HenrikRovira, CarmeHurtado-Guerrero, Ramon2023-03-01T20:21:32Z2023-03-01T20:21:32Z2022-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1038/s41467-022-32021-9Nature Communications, v. 13, n. 1, 2022.2041-1723http://hdl.handle.net/11449/24053810.1038/s41467-022-32021-92-s2.0-85134844649Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengNature Communicationsinfo:eu-repo/semantics/openAccess2023-03-01T20:21:32Zoai:repositorio.unesp.br:11449/240538Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:14:05.724515Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
title Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
spellingShingle Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
Taleb, Víctor
title_short Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
title_full Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
title_fullStr Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
title_full_unstemmed Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
title_sort Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
author Taleb, Víctor
author_facet Taleb, Víctor
Liao, Qinghua
Narimatsu, Yoshiki
García-García, Ana
Compañón, Ismael
Borges, Rafael Junqueira [UNESP]
González-Ramírez, Andrés Manuel
Corzana, Francisco
Clausen, Henrik
Rovira, Carme
Hurtado-Guerrero, Ramon
author_role author
author2 Liao, Qinghua
Narimatsu, Yoshiki
García-García, Ana
Compañón, Ismael
Borges, Rafael Junqueira [UNESP]
González-Ramírez, Andrés Manuel
Corzana, Francisco
Clausen, Henrik
Rovira, Carme
Hurtado-Guerrero, Ramon
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv University of Zaragoza
Universitat de Barcelona
University of Copenhagen
Centro de Investigación en Síntesis Química
Universidade Estadual Paulista (UNESP)
Institució Catalana de Recerca i Estudis Avancats (ICREA)
Fundación ARAID
dc.contributor.author.fl_str_mv Taleb, Víctor
Liao, Qinghua
Narimatsu, Yoshiki
García-García, Ana
Compañón, Ismael
Borges, Rafael Junqueira [UNESP]
González-Ramírez, Andrés Manuel
Corzana, Francisco
Clausen, Henrik
Rovira, Carme
Hurtado-Guerrero, Ramon
description Mucinases of human gut bacteria cleave peptide bonds in mucins strictly depending on the presence of neighboring O-glycans. The Akkermansia muciniphila AM0627 mucinase cleaves specifically in between contiguous (bis) O-glycans of defined truncated structures, suggesting that this enzyme may recognize clustered O-glycan patches. Here, we report the structure and molecular mechanism of AM0627 in complex with a glycopeptide containing a bis-T (Galβ1-3GalNAcα1-O-Ser/Thr) O-glycan, revealing that AM0627 recognizes both the sugar moieties and the peptide sequence. AM0627 exhibits preference for bis-T over bis-Tn (GalNAcα1-O-Ser/Thr) O-glycopeptide substrates, with the first GalNAc residue being essential for cleavage. AM0627 follows a mechanism relying on a nucleophilic water molecule and a catalytic base Glu residue. Structural comparison among mucinases identifies a conserved Tyr engaged in sugar-π interactions in both AM0627 and the Bacteroides thetaiotaomicron BT4244 mucinase as responsible for the common activity of these two mucinases with bis-T/Tn substrates. Our work illustrates how mucinases through tremendous flexibility adapt to the diversity in distribution and patterns of O-glycans on mucins.
publishDate 2022
dc.date.none.fl_str_mv 2022-12-01
2023-03-01T20:21:32Z
2023-03-01T20:21:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/s41467-022-32021-9
Nature Communications, v. 13, n. 1, 2022.
2041-1723
http://hdl.handle.net/11449/240538
10.1038/s41467-022-32021-9
2-s2.0-85134844649
url http://dx.doi.org/10.1038/s41467-022-32021-9
http://hdl.handle.net/11449/240538
identifier_str_mv Nature Communications, v. 13, n. 1, 2022.
2041-1723
10.1038/s41467-022-32021-9
2-s2.0-85134844649
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Nature Communications
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
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repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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