Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1038/s41467-022-32021-9 http://hdl.handle.net/11449/240538 |
Resumo: | Mucinases of human gut bacteria cleave peptide bonds in mucins strictly depending on the presence of neighboring O-glycans. The Akkermansia muciniphila AM0627 mucinase cleaves specifically in between contiguous (bis) O-glycans of defined truncated structures, suggesting that this enzyme may recognize clustered O-glycan patches. Here, we report the structure and molecular mechanism of AM0627 in complex with a glycopeptide containing a bis-T (Galβ1-3GalNAcα1-O-Ser/Thr) O-glycan, revealing that AM0627 recognizes both the sugar moieties and the peptide sequence. AM0627 exhibits preference for bis-T over bis-Tn (GalNAcα1-O-Ser/Thr) O-glycopeptide substrates, with the first GalNAc residue being essential for cleavage. AM0627 follows a mechanism relying on a nucleophilic water molecule and a catalytic base Glu residue. Structural comparison among mucinases identifies a conserved Tyr engaged in sugar-π interactions in both AM0627 and the Bacteroides thetaiotaomicron BT4244 mucinase as responsible for the common activity of these two mucinases with bis-T/Tn substrates. Our work illustrates how mucinases through tremendous flexibility adapt to the diversity in distribution and patterns of O-glycans on mucins. |
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Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gutMucinases of human gut bacteria cleave peptide bonds in mucins strictly depending on the presence of neighboring O-glycans. The Akkermansia muciniphila AM0627 mucinase cleaves specifically in between contiguous (bis) O-glycans of defined truncated structures, suggesting that this enzyme may recognize clustered O-glycan patches. Here, we report the structure and molecular mechanism of AM0627 in complex with a glycopeptide containing a bis-T (Galβ1-3GalNAcα1-O-Ser/Thr) O-glycan, revealing that AM0627 recognizes both the sugar moieties and the peptide sequence. AM0627 exhibits preference for bis-T over bis-Tn (GalNAcα1-O-Ser/Thr) O-glycopeptide substrates, with the first GalNAc residue being essential for cleavage. AM0627 follows a mechanism relying on a nucleophilic water molecule and a catalytic base Glu residue. Structural comparison among mucinases identifies a conserved Tyr engaged in sugar-π interactions in both AM0627 and the Bacteroides thetaiotaomicron BT4244 mucinase as responsible for the common activity of these two mucinases with bis-T/Tn substrates. Our work illustrates how mucinases through tremendous flexibility adapt to the diversity in distribution and patterns of O-glycans on mucins.Ministerio de Economía y CompetitividadInstitute of Biocomputation and Physics of Complex Systems University of Zaragoza, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+DDepartament de Química Inorgánica i Orgánica (Secció de Química Orgánica) and Institut de Química Teorica i Computacional (IQTCUB) Universitat de BarcelonaCopenhagen Center for Glycomics Department of Cellular and Molecular Medicine University of CopenhagenDepartamento de Química Universidad de La Rioja Centro de Investigación en Síntesis QuímicaDepartamento de Biofísica e Farmacologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Institució Catalana de Recerca i Estudis Avancats (ICREA)Fundación ARAIDDepartamento de Biofísica e Farmacologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Ministerio de Economía y Competitividad: PID2020-118893GB-I00University of ZaragozaUniversitat de BarcelonaUniversity of CopenhagenCentro de Investigación en Síntesis QuímicaUniversidade Estadual Paulista (UNESP)Institució Catalana de Recerca i Estudis Avancats (ICREA)Fundación ARAIDTaleb, VíctorLiao, QinghuaNarimatsu, YoshikiGarcía-García, AnaCompañón, IsmaelBorges, Rafael Junqueira [UNESP]González-Ramírez, Andrés ManuelCorzana, FranciscoClausen, HenrikRovira, CarmeHurtado-Guerrero, Ramon2023-03-01T20:21:32Z2023-03-01T20:21:32Z2022-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1038/s41467-022-32021-9Nature Communications, v. 13, n. 1, 2022.2041-1723http://hdl.handle.net/11449/24053810.1038/s41467-022-32021-92-s2.0-85134844649Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengNature Communicationsinfo:eu-repo/semantics/openAccess2023-03-01T20:21:32Zoai:repositorio.unesp.br:11449/240538Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:14:05.724515Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut |
title |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut |
spellingShingle |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut Taleb, Víctor |
title_short |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut |
title_full |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut |
title_fullStr |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut |
title_full_unstemmed |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut |
title_sort |
Structural and mechanistic insights into the cleavage of clustered O-glycan patches-containing glycoproteins by mucinases of the human gut |
author |
Taleb, Víctor |
author_facet |
Taleb, Víctor Liao, Qinghua Narimatsu, Yoshiki García-García, Ana Compañón, Ismael Borges, Rafael Junqueira [UNESP] González-Ramírez, Andrés Manuel Corzana, Francisco Clausen, Henrik Rovira, Carme Hurtado-Guerrero, Ramon |
author_role |
author |
author2 |
Liao, Qinghua Narimatsu, Yoshiki García-García, Ana Compañón, Ismael Borges, Rafael Junqueira [UNESP] González-Ramírez, Andrés Manuel Corzana, Francisco Clausen, Henrik Rovira, Carme Hurtado-Guerrero, Ramon |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
University of Zaragoza Universitat de Barcelona University of Copenhagen Centro de Investigación en Síntesis Química Universidade Estadual Paulista (UNESP) Institució Catalana de Recerca i Estudis Avancats (ICREA) Fundación ARAID |
dc.contributor.author.fl_str_mv |
Taleb, Víctor Liao, Qinghua Narimatsu, Yoshiki García-García, Ana Compañón, Ismael Borges, Rafael Junqueira [UNESP] González-Ramírez, Andrés Manuel Corzana, Francisco Clausen, Henrik Rovira, Carme Hurtado-Guerrero, Ramon |
description |
Mucinases of human gut bacteria cleave peptide bonds in mucins strictly depending on the presence of neighboring O-glycans. The Akkermansia muciniphila AM0627 mucinase cleaves specifically in between contiguous (bis) O-glycans of defined truncated structures, suggesting that this enzyme may recognize clustered O-glycan patches. Here, we report the structure and molecular mechanism of AM0627 in complex with a glycopeptide containing a bis-T (Galβ1-3GalNAcα1-O-Ser/Thr) O-glycan, revealing that AM0627 recognizes both the sugar moieties and the peptide sequence. AM0627 exhibits preference for bis-T over bis-Tn (GalNAcα1-O-Ser/Thr) O-glycopeptide substrates, with the first GalNAc residue being essential for cleavage. AM0627 follows a mechanism relying on a nucleophilic water molecule and a catalytic base Glu residue. Structural comparison among mucinases identifies a conserved Tyr engaged in sugar-π interactions in both AM0627 and the Bacteroides thetaiotaomicron BT4244 mucinase as responsible for the common activity of these two mucinases with bis-T/Tn substrates. Our work illustrates how mucinases through tremendous flexibility adapt to the diversity in distribution and patterns of O-glycans on mucins. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-12-01 2023-03-01T20:21:32Z 2023-03-01T20:21:32Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1038/s41467-022-32021-9 Nature Communications, v. 13, n. 1, 2022. 2041-1723 http://hdl.handle.net/11449/240538 10.1038/s41467-022-32021-9 2-s2.0-85134844649 |
url |
http://dx.doi.org/10.1038/s41467-022-32021-9 http://hdl.handle.net/11449/240538 |
identifier_str_mv |
Nature Communications, v. 13, n. 1, 2022. 2041-1723 10.1038/s41467-022-32021-9 2-s2.0-85134844649 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Nature Communications |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128223395971072 |