Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad

Detalhes bibliográficos
Autor(a) principal: Leal, Barbara Simoes Santos [UNESP]
Data de Publicação: 2021
Outros Autores: Chaves, Cleber Juliano Neves [UNESP], Graciano, Vanessa Araujo [UNESP], Boury, Christophe, Huacre, Luis Alberto Pillaca, Heuertz, Myriam, Palma-Silva, Clarisse [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/s41437-021-00442-9
http://hdl.handle.net/11449/210314
Resumo: Both genetic drift and divergent selection are predicted to be drivers of population differentiation across patchy habitats, but the extent to which these forces act on natural populations to shape traits is strongly affected by species' ecological features. In this study, we infer the genomic structure of Pitcairnia lanuginosa, a widespread herbaceous perennial plant with a patchy distribution. We sampled populations in the Brazilian Cerrado and the Central Andean Yungas and discovered and genotyped SNP markers using double-digest restriction-site associated DNA sequencing. In addition, we analyzed ecophysiological traits obtained from a common garden experiment and compared patterns of phenotypic and genetic divergence (P-ST-F-ST comparisons) in a subset of populations from the Cerrado. Our results from molecular analyses pointed to extremely low genetic diversity and a remarkable population differentiation, supporting a major role of genetic drift. Approximately 0.3% of genotyped SNPs were flagged as differentiation outliers by at least two distinct methods, and Bayesian generalized linear mixed models revealed a signature of isolation by environment in addition to isolation by distance for high-differentiation outlier SNPs among the Cerrado populations. P-ST-F-ST comparisons suggested divergent selection on two ecophysiological traits linked to drought tolerance. We showed that these traits vary among populations, although without any particular macro-spatial pattern, suggesting local adaptation to differences in micro-habitats. Our study shows that selection might be a relevant force, particularly for traits involved in drought stress, even for populations experiencing strong drift, which improves our knowledge on eco-evolutionary processes acting on non-continuously distributed species.
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spelling Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliadBoth genetic drift and divergent selection are predicted to be drivers of population differentiation across patchy habitats, but the extent to which these forces act on natural populations to shape traits is strongly affected by species' ecological features. In this study, we infer the genomic structure of Pitcairnia lanuginosa, a widespread herbaceous perennial plant with a patchy distribution. We sampled populations in the Brazilian Cerrado and the Central Andean Yungas and discovered and genotyped SNP markers using double-digest restriction-site associated DNA sequencing. In addition, we analyzed ecophysiological traits obtained from a common garden experiment and compared patterns of phenotypic and genetic divergence (P-ST-F-ST comparisons) in a subset of populations from the Cerrado. Our results from molecular analyses pointed to extremely low genetic diversity and a remarkable population differentiation, supporting a major role of genetic drift. Approximately 0.3% of genotyped SNPs were flagged as differentiation outliers by at least two distinct methods, and Bayesian generalized linear mixed models revealed a signature of isolation by environment in addition to isolation by distance for high-differentiation outlier SNPs among the Cerrado populations. P-ST-F-ST comparisons suggested divergent selection on two ecophysiological traits linked to drought tolerance. We showed that these traits vary among populations, although without any particular macro-spatial pattern, suggesting local adaptation to differences in micro-habitats. Our study shows that selection might be a relevant force, particularly for traits involved in drought stress, even for populations experiencing strong drift, which improves our knowledge on eco-evolutionary processes acting on non-continuously distributed species.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Investissement d'Avenir grants of the ANRCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)LabEx COTE mobility grantConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)SISBIOSERFORIDEFLOR-Bio/PASEMARH/GOIEF/MGUniv Estadual Paulista, Dept Ecol, Inst Biociencias, Rio Claro, SP, BrazilUniv Bordeaux, INRAE, Biogeco, Cestas, FranceUniv Nacl Mayor San Marcos, Dept Ecol, Museo Hist Nat, Lima, PeruUniv Estadual Campinas, Inst Biol, Dept Biol Vegetal, Campinas, SP, BrazilUniv Estadual Paulista, Dept Ecol, Inst Biociencias, Rio Claro, SP, BrazilFAPESP: 2014/15588-6Investissement d'Avenir grants of the ANR: CEBA:ANR-10-LABX-2501CAPES: 001FAPESP: 2014/08087-0FAPESP: 2016/04396-4FAPESP: 2016/20273-0CNPq: 300819/2016-1SISBIO: 44062-1SERFOR: 2017-2016IDEFLOR-Bio/PA: 001/15SEMARH/GO: 187/2014IEF/MG: 081/2014SpringerUniversidade Estadual Paulista (Unesp)Univ BordeauxUniv Nacl Mayor San MarcosUniversidade Estadual de Campinas (UNICAMP)Leal, Barbara Simoes Santos [UNESP]Chaves, Cleber Juliano Neves [UNESP]Graciano, Vanessa Araujo [UNESP]Boury, ChristopheHuacre, Luis Alberto PillacaHeuertz, MyriamPalma-Silva, Clarisse [UNESP]2021-06-25T15:04:36Z2021-06-25T15:04:36Z2021-05-05info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article16http://dx.doi.org/10.1038/s41437-021-00442-9Heredity. London: Springernature, 16 p., 2021.0018-067Xhttp://hdl.handle.net/11449/21031410.1038/s41437-021-00442-9WOS:000647980700001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengHeredityinfo:eu-repo/semantics/openAccess2021-10-23T20:17:27Zoai:repositorio.unesp.br:11449/210314Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:08:27.256Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
title Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
spellingShingle Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
Leal, Barbara Simoes Santos [UNESP]
title_short Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
title_full Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
title_fullStr Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
title_full_unstemmed Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
title_sort Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
author Leal, Barbara Simoes Santos [UNESP]
author_facet Leal, Barbara Simoes Santos [UNESP]
Chaves, Cleber Juliano Neves [UNESP]
Graciano, Vanessa Araujo [UNESP]
Boury, Christophe
Huacre, Luis Alberto Pillaca
Heuertz, Myriam
Palma-Silva, Clarisse [UNESP]
author_role author
author2 Chaves, Cleber Juliano Neves [UNESP]
Graciano, Vanessa Araujo [UNESP]
Boury, Christophe
Huacre, Luis Alberto Pillaca
Heuertz, Myriam
Palma-Silva, Clarisse [UNESP]
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Univ Bordeaux
Univ Nacl Mayor San Marcos
Universidade Estadual de Campinas (UNICAMP)
dc.contributor.author.fl_str_mv Leal, Barbara Simoes Santos [UNESP]
Chaves, Cleber Juliano Neves [UNESP]
Graciano, Vanessa Araujo [UNESP]
Boury, Christophe
Huacre, Luis Alberto Pillaca
Heuertz, Myriam
Palma-Silva, Clarisse [UNESP]
description Both genetic drift and divergent selection are predicted to be drivers of population differentiation across patchy habitats, but the extent to which these forces act on natural populations to shape traits is strongly affected by species' ecological features. In this study, we infer the genomic structure of Pitcairnia lanuginosa, a widespread herbaceous perennial plant with a patchy distribution. We sampled populations in the Brazilian Cerrado and the Central Andean Yungas and discovered and genotyped SNP markers using double-digest restriction-site associated DNA sequencing. In addition, we analyzed ecophysiological traits obtained from a common garden experiment and compared patterns of phenotypic and genetic divergence (P-ST-F-ST comparisons) in a subset of populations from the Cerrado. Our results from molecular analyses pointed to extremely low genetic diversity and a remarkable population differentiation, supporting a major role of genetic drift. Approximately 0.3% of genotyped SNPs were flagged as differentiation outliers by at least two distinct methods, and Bayesian generalized linear mixed models revealed a signature of isolation by environment in addition to isolation by distance for high-differentiation outlier SNPs among the Cerrado populations. P-ST-F-ST comparisons suggested divergent selection on two ecophysiological traits linked to drought tolerance. We showed that these traits vary among populations, although without any particular macro-spatial pattern, suggesting local adaptation to differences in micro-habitats. Our study shows that selection might be a relevant force, particularly for traits involved in drought stress, even for populations experiencing strong drift, which improves our knowledge on eco-evolutionary processes acting on non-continuously distributed species.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T15:04:36Z
2021-06-25T15:04:36Z
2021-05-05
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/s41437-021-00442-9
Heredity. London: Springernature, 16 p., 2021.
0018-067X
http://hdl.handle.net/11449/210314
10.1038/s41437-021-00442-9
WOS:000647980700001
url http://dx.doi.org/10.1038/s41437-021-00442-9
http://hdl.handle.net/11449/210314
identifier_str_mv Heredity. London: Springernature, 16 p., 2021.
0018-067X
10.1038/s41437-021-00442-9
WOS:000647980700001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Heredity
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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