Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1038/s41437-021-00442-9 http://hdl.handle.net/11449/210314 |
Resumo: | Both genetic drift and divergent selection are predicted to be drivers of population differentiation across patchy habitats, but the extent to which these forces act on natural populations to shape traits is strongly affected by species' ecological features. In this study, we infer the genomic structure of Pitcairnia lanuginosa, a widespread herbaceous perennial plant with a patchy distribution. We sampled populations in the Brazilian Cerrado and the Central Andean Yungas and discovered and genotyped SNP markers using double-digest restriction-site associated DNA sequencing. In addition, we analyzed ecophysiological traits obtained from a common garden experiment and compared patterns of phenotypic and genetic divergence (P-ST-F-ST comparisons) in a subset of populations from the Cerrado. Our results from molecular analyses pointed to extremely low genetic diversity and a remarkable population differentiation, supporting a major role of genetic drift. Approximately 0.3% of genotyped SNPs were flagged as differentiation outliers by at least two distinct methods, and Bayesian generalized linear mixed models revealed a signature of isolation by environment in addition to isolation by distance for high-differentiation outlier SNPs among the Cerrado populations. P-ST-F-ST comparisons suggested divergent selection on two ecophysiological traits linked to drought tolerance. We showed that these traits vary among populations, although without any particular macro-spatial pattern, suggesting local adaptation to differences in micro-habitats. Our study shows that selection might be a relevant force, particularly for traits involved in drought stress, even for populations experiencing strong drift, which improves our knowledge on eco-evolutionary processes acting on non-continuously distributed species. |
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Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliadBoth genetic drift and divergent selection are predicted to be drivers of population differentiation across patchy habitats, but the extent to which these forces act on natural populations to shape traits is strongly affected by species' ecological features. In this study, we infer the genomic structure of Pitcairnia lanuginosa, a widespread herbaceous perennial plant with a patchy distribution. We sampled populations in the Brazilian Cerrado and the Central Andean Yungas and discovered and genotyped SNP markers using double-digest restriction-site associated DNA sequencing. In addition, we analyzed ecophysiological traits obtained from a common garden experiment and compared patterns of phenotypic and genetic divergence (P-ST-F-ST comparisons) in a subset of populations from the Cerrado. Our results from molecular analyses pointed to extremely low genetic diversity and a remarkable population differentiation, supporting a major role of genetic drift. Approximately 0.3% of genotyped SNPs were flagged as differentiation outliers by at least two distinct methods, and Bayesian generalized linear mixed models revealed a signature of isolation by environment in addition to isolation by distance for high-differentiation outlier SNPs among the Cerrado populations. P-ST-F-ST comparisons suggested divergent selection on two ecophysiological traits linked to drought tolerance. We showed that these traits vary among populations, although without any particular macro-spatial pattern, suggesting local adaptation to differences in micro-habitats. Our study shows that selection might be a relevant force, particularly for traits involved in drought stress, even for populations experiencing strong drift, which improves our knowledge on eco-evolutionary processes acting on non-continuously distributed species.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Investissement d'Avenir grants of the ANRCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)LabEx COTE mobility grantConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)SISBIOSERFORIDEFLOR-Bio/PASEMARH/GOIEF/MGUniv Estadual Paulista, Dept Ecol, Inst Biociencias, Rio Claro, SP, BrazilUniv Bordeaux, INRAE, Biogeco, Cestas, FranceUniv Nacl Mayor San Marcos, Dept Ecol, Museo Hist Nat, Lima, PeruUniv Estadual Campinas, Inst Biol, Dept Biol Vegetal, Campinas, SP, BrazilUniv Estadual Paulista, Dept Ecol, Inst Biociencias, Rio Claro, SP, BrazilFAPESP: 2014/15588-6Investissement d'Avenir grants of the ANR: CEBA:ANR-10-LABX-2501CAPES: 001FAPESP: 2014/08087-0FAPESP: 2016/04396-4FAPESP: 2016/20273-0CNPq: 300819/2016-1SISBIO: 44062-1SERFOR: 2017-2016IDEFLOR-Bio/PA: 001/15SEMARH/GO: 187/2014IEF/MG: 081/2014SpringerUniversidade Estadual Paulista (Unesp)Univ BordeauxUniv Nacl Mayor San MarcosUniversidade Estadual de Campinas (UNICAMP)Leal, Barbara Simoes Santos [UNESP]Chaves, Cleber Juliano Neves [UNESP]Graciano, Vanessa Araujo [UNESP]Boury, ChristopheHuacre, Luis Alberto PillacaHeuertz, MyriamPalma-Silva, Clarisse [UNESP]2021-06-25T15:04:36Z2021-06-25T15:04:36Z2021-05-05info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article16http://dx.doi.org/10.1038/s41437-021-00442-9Heredity. London: Springernature, 16 p., 2021.0018-067Xhttp://hdl.handle.net/11449/21031410.1038/s41437-021-00442-9WOS:000647980700001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengHeredityinfo:eu-repo/semantics/openAccess2021-10-23T20:17:27Zoai:repositorio.unesp.br:11449/210314Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:08:27.256Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad |
title |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad |
spellingShingle |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad Leal, Barbara Simoes Santos [UNESP] |
title_short |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad |
title_full |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad |
title_fullStr |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad |
title_full_unstemmed |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad |
title_sort |
Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad |
author |
Leal, Barbara Simoes Santos [UNESP] |
author_facet |
Leal, Barbara Simoes Santos [UNESP] Chaves, Cleber Juliano Neves [UNESP] Graciano, Vanessa Araujo [UNESP] Boury, Christophe Huacre, Luis Alberto Pillaca Heuertz, Myriam Palma-Silva, Clarisse [UNESP] |
author_role |
author |
author2 |
Chaves, Cleber Juliano Neves [UNESP] Graciano, Vanessa Araujo [UNESP] Boury, Christophe Huacre, Luis Alberto Pillaca Heuertz, Myriam Palma-Silva, Clarisse [UNESP] |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Univ Bordeaux Univ Nacl Mayor San Marcos Universidade Estadual de Campinas (UNICAMP) |
dc.contributor.author.fl_str_mv |
Leal, Barbara Simoes Santos [UNESP] Chaves, Cleber Juliano Neves [UNESP] Graciano, Vanessa Araujo [UNESP] Boury, Christophe Huacre, Luis Alberto Pillaca Heuertz, Myriam Palma-Silva, Clarisse [UNESP] |
description |
Both genetic drift and divergent selection are predicted to be drivers of population differentiation across patchy habitats, but the extent to which these forces act on natural populations to shape traits is strongly affected by species' ecological features. In this study, we infer the genomic structure of Pitcairnia lanuginosa, a widespread herbaceous perennial plant with a patchy distribution. We sampled populations in the Brazilian Cerrado and the Central Andean Yungas and discovered and genotyped SNP markers using double-digest restriction-site associated DNA sequencing. In addition, we analyzed ecophysiological traits obtained from a common garden experiment and compared patterns of phenotypic and genetic divergence (P-ST-F-ST comparisons) in a subset of populations from the Cerrado. Our results from molecular analyses pointed to extremely low genetic diversity and a remarkable population differentiation, supporting a major role of genetic drift. Approximately 0.3% of genotyped SNPs were flagged as differentiation outliers by at least two distinct methods, and Bayesian generalized linear mixed models revealed a signature of isolation by environment in addition to isolation by distance for high-differentiation outlier SNPs among the Cerrado populations. P-ST-F-ST comparisons suggested divergent selection on two ecophysiological traits linked to drought tolerance. We showed that these traits vary among populations, although without any particular macro-spatial pattern, suggesting local adaptation to differences in micro-habitats. Our study shows that selection might be a relevant force, particularly for traits involved in drought stress, even for populations experiencing strong drift, which improves our knowledge on eco-evolutionary processes acting on non-continuously distributed species. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T15:04:36Z 2021-06-25T15:04:36Z 2021-05-05 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1038/s41437-021-00442-9 Heredity. London: Springernature, 16 p., 2021. 0018-067X http://hdl.handle.net/11449/210314 10.1038/s41437-021-00442-9 WOS:000647980700001 |
url |
http://dx.doi.org/10.1038/s41437-021-00442-9 http://hdl.handle.net/11449/210314 |
identifier_str_mv |
Heredity. London: Springernature, 16 p., 2021. 0018-067X 10.1038/s41437-021-00442-9 WOS:000647980700001 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Heredity |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
16 |
dc.publisher.none.fl_str_mv |
Springer |
publisher.none.fl_str_mv |
Springer |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
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1808128609878016000 |