Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans

Detalhes bibliográficos
Autor(a) principal: Arantes, Paula Tamiaõ [UNESP]
Data de Publicação: 2016
Outros Autores: Sanitá, Paula Volpato [UNESP], Santezi, Carolina [UNESP], Barbeiro, Camila De Oliveira [UNESP], Reina, Bárbara Donadon [UNESP], Vergani, Carlos Eduardo [UNESP], Dovigo, Lívia Nordi [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1093/mmy/myv103
http://hdl.handle.net/11449/172870
Resumo: The aim of this study was to establish a reproducible protocol using the methodology of hyaline zones around the colonies on specific agar plates for phospholipase and proteinase production. This was an in vitro double-blind experiment, in which the dependent variables were the enzymatic activity measurements (Pz) for the production of phospholipase (Pz-ph) and the production of secreted aspartyl proteinases (Pz-sap). Three independent variables give rise to different measurement protocols. All measurements were carried out at two different moments by four examiners (E1, E2, E3, and E4). The minimum sample size was 30 Candida albicans clinical isolates. Specific agar plates for phospholipase and SAPs production were prepared according the literature. The intra-and inter-examiner reproducibility for each protocol was estimated using the Intraclass Correlation Coefficient (ICC) and its confidence interval (95% CI). Based on the results obtained for both phospholipase and SAPs, there appears to be no consensus on the protocol chosen for each particular examiner. Measuring the colonies in triplicate may be the main factor associated with the increase in measurement accuracy and should therefore take precedence over measuring only one colony. When only one examiner is responsible for taking measurements, a standard protocol should be put in place and the statistical calibration of this researcher should be done prior to data collection. However, if two or more researchers are involved in the assessment of agar plates, our results suggest that the protocols using software to undertake plate reading is preferred.
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spelling Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicansCandida albicansReproducibility of ResultsVirulence factorsThe aim of this study was to establish a reproducible protocol using the methodology of hyaline zones around the colonies on specific agar plates for phospholipase and proteinase production. This was an in vitro double-blind experiment, in which the dependent variables were the enzymatic activity measurements (Pz) for the production of phospholipase (Pz-ph) and the production of secreted aspartyl proteinases (Pz-sap). Three independent variables give rise to different measurement protocols. All measurements were carried out at two different moments by four examiners (E1, E2, E3, and E4). The minimum sample size was 30 Candida albicans clinical isolates. Specific agar plates for phospholipase and SAPs production were prepared according the literature. The intra-and inter-examiner reproducibility for each protocol was estimated using the Intraclass Correlation Coefficient (ICC) and its confidence interval (95% CI). Based on the results obtained for both phospholipase and SAPs, there appears to be no consensus on the protocol chosen for each particular examiner. Measuring the colonies in triplicate may be the main factor associated with the increase in measurement accuracy and should therefore take precedence over measuring only one colony. When only one examiner is responsible for taking measurements, a standard protocol should be put in place and the statistical calibration of this researcher should be done prior to data collection. However, if two or more researchers are involved in the assessment of agar plates, our results suggest that the protocols using software to undertake plate reading is preferred.Department of Social Dentistry Araraquara Dental School UNESP-Univ Estadual Paulista, Humaitá Street 1680Department of Dental Materials and Prosthodontics Araraquara Dental School UNESP-Univ Estadual Paulista, Humaitá Street 1680Department of Social Dentistry Araraquara Dental School UNESP-Univ Estadual Paulista, Humaitá Street 1680Department of Dental Materials and Prosthodontics Araraquara Dental School UNESP-Univ Estadual Paulista, Humaitá Street 1680Universidade Estadual Paulista (Unesp)Arantes, Paula Tamiaõ [UNESP]Sanitá, Paula Volpato [UNESP]Santezi, Carolina [UNESP]Barbeiro, Camila De Oliveira [UNESP]Reina, Bárbara Donadon [UNESP]Vergani, Carlos Eduardo [UNESP]Dovigo, Lívia Nordi [UNESP]2018-12-11T17:02:30Z2018-12-11T17:02:30Z2016-01-14info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article266-274application/pdfhttp://dx.doi.org/10.1093/mmy/myv103Medical Mycology, v. 54, n. 3, p. 266-274, 2016.1460-27091369-3786http://hdl.handle.net/11449/17287010.1093/mmy/myv1032-s2.0-849644130192-s2.0-84964413019.pdf0127570480681342Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMedical Mycology0,9730,973info:eu-repo/semantics/openAccess2023-10-12T06:07:46Zoai:repositorio.unesp.br:11449/172870Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-10-12T06:07:46Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
title Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
spellingShingle Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
Arantes, Paula Tamiaõ [UNESP]
Candida albicans
Reproducibility of Results
Virulence factors
title_short Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
title_full Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
title_fullStr Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
title_full_unstemmed Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
title_sort Reliability of the agar based method to assess the production of degradative enzymes in clinical isolates of Candida albicans
author Arantes, Paula Tamiaõ [UNESP]
author_facet Arantes, Paula Tamiaõ [UNESP]
Sanitá, Paula Volpato [UNESP]
Santezi, Carolina [UNESP]
Barbeiro, Camila De Oliveira [UNESP]
Reina, Bárbara Donadon [UNESP]
Vergani, Carlos Eduardo [UNESP]
Dovigo, Lívia Nordi [UNESP]
author_role author
author2 Sanitá, Paula Volpato [UNESP]
Santezi, Carolina [UNESP]
Barbeiro, Camila De Oliveira [UNESP]
Reina, Bárbara Donadon [UNESP]
Vergani, Carlos Eduardo [UNESP]
Dovigo, Lívia Nordi [UNESP]
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Arantes, Paula Tamiaõ [UNESP]
Sanitá, Paula Volpato [UNESP]
Santezi, Carolina [UNESP]
Barbeiro, Camila De Oliveira [UNESP]
Reina, Bárbara Donadon [UNESP]
Vergani, Carlos Eduardo [UNESP]
Dovigo, Lívia Nordi [UNESP]
dc.subject.por.fl_str_mv Candida albicans
Reproducibility of Results
Virulence factors
topic Candida albicans
Reproducibility of Results
Virulence factors
description The aim of this study was to establish a reproducible protocol using the methodology of hyaline zones around the colonies on specific agar plates for phospholipase and proteinase production. This was an in vitro double-blind experiment, in which the dependent variables were the enzymatic activity measurements (Pz) for the production of phospholipase (Pz-ph) and the production of secreted aspartyl proteinases (Pz-sap). Three independent variables give rise to different measurement protocols. All measurements were carried out at two different moments by four examiners (E1, E2, E3, and E4). The minimum sample size was 30 Candida albicans clinical isolates. Specific agar plates for phospholipase and SAPs production were prepared according the literature. The intra-and inter-examiner reproducibility for each protocol was estimated using the Intraclass Correlation Coefficient (ICC) and its confidence interval (95% CI). Based on the results obtained for both phospholipase and SAPs, there appears to be no consensus on the protocol chosen for each particular examiner. Measuring the colonies in triplicate may be the main factor associated with the increase in measurement accuracy and should therefore take precedence over measuring only one colony. When only one examiner is responsible for taking measurements, a standard protocol should be put in place and the statistical calibration of this researcher should be done prior to data collection. However, if two or more researchers are involved in the assessment of agar plates, our results suggest that the protocols using software to undertake plate reading is preferred.
publishDate 2016
dc.date.none.fl_str_mv 2016-01-14
2018-12-11T17:02:30Z
2018-12-11T17:02:30Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1093/mmy/myv103
Medical Mycology, v. 54, n. 3, p. 266-274, 2016.
1460-2709
1369-3786
http://hdl.handle.net/11449/172870
10.1093/mmy/myv103
2-s2.0-84964413019
2-s2.0-84964413019.pdf
0127570480681342
url http://dx.doi.org/10.1093/mmy/myv103
http://hdl.handle.net/11449/172870
identifier_str_mv Medical Mycology, v. 54, n. 3, p. 266-274, 2016.
1460-2709
1369-3786
10.1093/mmy/myv103
2-s2.0-84964413019
2-s2.0-84964413019.pdf
0127570480681342
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Medical Mycology
0,973
0,973
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 266-274
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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