Use of ridge regression for the prediction of early growth performance in crossbred calves

Detalhes bibliográficos
Autor(a) principal: Gouveia Pirrientel, Eduardo da Cruz
Data de Publicação: 2007
Outros Autores: Aidar de Queiroz, Sandra, Carvalheiro, Roberto, Fries, Luiz Alberto
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://hdl.handle.net/11449/195879
Resumo: The problem of multicollinearity in regression analysis was studied. Ridge regression (RR) techniques were used to estimate parameters affecting the performance of crossbred calves raised in tropical and subtropical regions by a model including additive, dominance, joint additive or profit heterosis and epistatic effects and their interactions with latitude in an attempt to model genotype by environment interactions. A software was developed in Fortran 77 to perform five variant types of RR: the originally proposed method; the method implemented by SAS; and three methods of weighting the RR parameter lambda. Three mathematical criteria were tested with the aim of choosing a value for the lambda coefficient: the sum and the harmonic mean of the absolute Student t-values and the value of lambda at which all variance inflation factors (VIF) became lower than 300. Prediction surfaces obtained from estimated coefficients were used to compare the five methods and three criteria. It was concluded that RR could be a good alternative to overcome multicollinearity problems. For all the methods tested, acceptable prediction surfaces could be obtained when the VIF criterion was employed. This mathematical criterion is thus recommended as an auxiliary tool for choosing lambda.
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spelling Use of ridge regression for the prediction of early growth performance in crossbred calvescrossbreedingepistasisgenotype by environment interactionheterosismulticollinearityThe problem of multicollinearity in regression analysis was studied. Ridge regression (RR) techniques were used to estimate parameters affecting the performance of crossbred calves raised in tropical and subtropical regions by a model including additive, dominance, joint additive or profit heterosis and epistatic effects and their interactions with latitude in an attempt to model genotype by environment interactions. A software was developed in Fortran 77 to perform five variant types of RR: the originally proposed method; the method implemented by SAS; and three methods of weighting the RR parameter lambda. Three mathematical criteria were tested with the aim of choosing a value for the lambda coefficient: the sum and the harmonic mean of the absolute Student t-values and the value of lambda at which all variance inflation factors (VIF) became lower than 300. Prediction surfaces obtained from estimated coefficients were used to compare the five methods and three criteria. It was concluded that RR could be a good alternative to overcome multicollinearity problems. For all the methods tested, acceptable prediction surfaces could be obtained when the VIF criterion was employed. This mathematical criterion is thus recommended as an auxiliary tool for choosing lambda.Univ Estadual Paulista, Fac Ciencias Agr & Vet, Dept Zootecnia, BR-14884900 Jaboticabal, SP, BrazilGenSys Consultores Associados S S Ltda, Porto Alegre, RS, BrazilLagoa Serra Ltda Holland Genet, Sertaozinho, SP, BrazilUniv Estadual Paulista, Fac Ciencias Agr & Vet, Dept Zootecnia, BR-14884900 Jaboticabal, SP, BrazilSoc Brasil GeneticaUniversidade Estadual Paulista (Unesp)GenSys Consultores Associados S S LtdaLagoa Serra Ltda Holland GenetGouveia Pirrientel, Eduardo da CruzAidar de Queiroz, SandraCarvalheiro, RobertoFries, Luiz Alberto2020-12-10T18:06:23Z2020-12-10T18:06:23Z2007-09-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article536-544Genetics And Molecular Biology. Ribeirao Pret: Soc Brasil Genetica, v. 30, n. 3, p. 536-544, 2007.1415-4757http://hdl.handle.net/11449/195879WOS:000249206200006Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetics And Molecular Biologyinfo:eu-repo/semantics/openAccess2024-06-07T18:43:06Zoai:repositorio.unesp.br:11449/195879Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:17:56.696744Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Use of ridge regression for the prediction of early growth performance in crossbred calves
title Use of ridge regression for the prediction of early growth performance in crossbred calves
spellingShingle Use of ridge regression for the prediction of early growth performance in crossbred calves
Gouveia Pirrientel, Eduardo da Cruz
crossbreeding
epistasis
genotype by environment interaction
heterosis
multicollinearity
title_short Use of ridge regression for the prediction of early growth performance in crossbred calves
title_full Use of ridge regression for the prediction of early growth performance in crossbred calves
title_fullStr Use of ridge regression for the prediction of early growth performance in crossbred calves
title_full_unstemmed Use of ridge regression for the prediction of early growth performance in crossbred calves
title_sort Use of ridge regression for the prediction of early growth performance in crossbred calves
author Gouveia Pirrientel, Eduardo da Cruz
author_facet Gouveia Pirrientel, Eduardo da Cruz
Aidar de Queiroz, Sandra
Carvalheiro, Roberto
Fries, Luiz Alberto
author_role author
author2 Aidar de Queiroz, Sandra
Carvalheiro, Roberto
Fries, Luiz Alberto
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
GenSys Consultores Associados S S Ltda
Lagoa Serra Ltda Holland Genet
dc.contributor.author.fl_str_mv Gouveia Pirrientel, Eduardo da Cruz
Aidar de Queiroz, Sandra
Carvalheiro, Roberto
Fries, Luiz Alberto
dc.subject.por.fl_str_mv crossbreeding
epistasis
genotype by environment interaction
heterosis
multicollinearity
topic crossbreeding
epistasis
genotype by environment interaction
heterosis
multicollinearity
description The problem of multicollinearity in regression analysis was studied. Ridge regression (RR) techniques were used to estimate parameters affecting the performance of crossbred calves raised in tropical and subtropical regions by a model including additive, dominance, joint additive or profit heterosis and epistatic effects and their interactions with latitude in an attempt to model genotype by environment interactions. A software was developed in Fortran 77 to perform five variant types of RR: the originally proposed method; the method implemented by SAS; and three methods of weighting the RR parameter lambda. Three mathematical criteria were tested with the aim of choosing a value for the lambda coefficient: the sum and the harmonic mean of the absolute Student t-values and the value of lambda at which all variance inflation factors (VIF) became lower than 300. Prediction surfaces obtained from estimated coefficients were used to compare the five methods and three criteria. It was concluded that RR could be a good alternative to overcome multicollinearity problems. For all the methods tested, acceptable prediction surfaces could be obtained when the VIF criterion was employed. This mathematical criterion is thus recommended as an auxiliary tool for choosing lambda.
publishDate 2007
dc.date.none.fl_str_mv 2007-09-01
2020-12-10T18:06:23Z
2020-12-10T18:06:23Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics And Molecular Biology. Ribeirao Pret: Soc Brasil Genetica, v. 30, n. 3, p. 536-544, 2007.
1415-4757
http://hdl.handle.net/11449/195879
WOS:000249206200006
identifier_str_mv Genetics And Molecular Biology. Ribeirao Pret: Soc Brasil Genetica, v. 30, n. 3, p. 536-544, 2007.
1415-4757
WOS:000249206200006
url http://hdl.handle.net/11449/195879
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genetics And Molecular Biology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 536-544
dc.publisher.none.fl_str_mv Soc Brasil Genetica
publisher.none.fl_str_mv Soc Brasil Genetica
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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