Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.molstruc.2020.129844 http://hdl.handle.net/11449/205695 |
Resumo: | In this study, guadiscine (G1) and guadiscidine (G2), 7,7-dimethylaporphine alkaloids from Guatteria friesiana, have they geometric paramaters, vibrational behavior and quantum chemical properties (HOMO-LUMO, MEP, ALIE and Fukui indices) analyzed through a theoretical view, by density functional theory (DFT), using the Becker's three-parameter hybrid exchange functional combined with the Lee–Yang–Parr correlation functional (B3LYP) and 6–311G(2d,p) and 6–311G++(2df,3p) basis sets. The obtained geometry data were compared with x-ray data for (−)-N-acetyl-anonaine, showing close values. Vibrational analysis, together with potential energy distribution (PED) calculations, revealed several characteristic vibrations that characterize the 7,7 dimethylaporphine skeleton, besides enabling the observation of intermolecular H-bonds through dimers formation. Molecular dynamic simulations were carried out, allowing to evaluate the solvation free energies of G1 and G2 in water, methanol and ethanol, as well as H-bonds formation between G1 and G2 and the tested solvents. The antineoplastic potential of the title molecules was evaluated via molecular docking calculations with topoisomerase I complexed with DNA. Guadiscine and guadiscidine showed, respectively, binding free energies of -8.0 and -8.5 kcal/mol, while topotecan, a DNA topoisomerase I inhibitor, showed a binding free energy value of -12 kcal/mol, indicating that the studied molecules are good topoisomerase I inhibitors. In vitro cytotoxicity assay with HepG2 cell line were performed, revealing significant antitumor potential for G2. |
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Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids7,7-dimethylaporphine alkaloidsCytotoxicityDFTDockingHepG2Molecular dynamicsIn this study, guadiscine (G1) and guadiscidine (G2), 7,7-dimethylaporphine alkaloids from Guatteria friesiana, have they geometric paramaters, vibrational behavior and quantum chemical properties (HOMO-LUMO, MEP, ALIE and Fukui indices) analyzed through a theoretical view, by density functional theory (DFT), using the Becker's three-parameter hybrid exchange functional combined with the Lee–Yang–Parr correlation functional (B3LYP) and 6–311G(2d,p) and 6–311G++(2df,3p) basis sets. The obtained geometry data were compared with x-ray data for (−)-N-acetyl-anonaine, showing close values. Vibrational analysis, together with potential energy distribution (PED) calculations, revealed several characteristic vibrations that characterize the 7,7 dimethylaporphine skeleton, besides enabling the observation of intermolecular H-bonds through dimers formation. Molecular dynamic simulations were carried out, allowing to evaluate the solvation free energies of G1 and G2 in water, methanol and ethanol, as well as H-bonds formation between G1 and G2 and the tested solvents. The antineoplastic potential of the title molecules was evaluated via molecular docking calculations with topoisomerase I complexed with DNA. Guadiscine and guadiscidine showed, respectively, binding free energies of -8.0 and -8.5 kcal/mol, while topotecan, a DNA topoisomerase I inhibitor, showed a binding free energy value of -12 kcal/mol, indicating that the studied molecules are good topoisomerase I inhibitors. In vitro cytotoxicity assay with HepG2 cell line were performed, revealing significant antitumor potential for G2.Department of Chemistry Federal University of Amazonas (DQ-UFAM)Chemistry institute University of CampinasFaculty of Sciences and Letters - Araraquara Campus São Paulo State University (UNESP)Gonçalo Moniz Institute Oswaldo Cruz Fundation (IGM/FIOCRUZ-BA)Faculty of Sciences and Letters - Araraquara Campus São Paulo State University (UNESP)Federal University of Amazonas (DQ-UFAM)Universidade Estadual de Campinas (UNICAMP)Universidade Estadual Paulista (Unesp)Oswaldo Cruz Fundation (IGM/FIOCRUZ-BA)Costa, Renyer A.Barros, Gabriel de A.da Silva, Jonathas N. [UNESP]Oliveira, Kelson M.Bezerra, Daniel P.Soares, Milena B.P.Costa, Emmanoel V.2021-06-25T10:19:41Z2021-06-25T10:19:41Z2021-04-05info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.molstruc.2020.129844Journal of Molecular Structure, v. 1229.0022-2860http://hdl.handle.net/11449/20569510.1016/j.molstruc.2020.1298442-s2.0-85099005983Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Molecular Structureinfo:eu-repo/semantics/openAccess2021-10-22T13:22:18Zoai:repositorio.unesp.br:11449/205695Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:24:56.292825Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids |
title |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids |
spellingShingle |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids Costa, Renyer A. 7,7-dimethylaporphine alkaloids Cytotoxicity DFT Docking HepG2 Molecular dynamics |
title_short |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids |
title_full |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids |
title_fullStr |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids |
title_full_unstemmed |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids |
title_sort |
Experimental and theoretical study on spectral features, reactivity, solvation, topoisomerase I inhibition and in vitro cytotoxicity in human HepG2 cells of guadiscine and guadiscidine aporphine alkaloids |
author |
Costa, Renyer A. |
author_facet |
Costa, Renyer A. Barros, Gabriel de A. da Silva, Jonathas N. [UNESP] Oliveira, Kelson M. Bezerra, Daniel P. Soares, Milena B.P. Costa, Emmanoel V. |
author_role |
author |
author2 |
Barros, Gabriel de A. da Silva, Jonathas N. [UNESP] Oliveira, Kelson M. Bezerra, Daniel P. Soares, Milena B.P. Costa, Emmanoel V. |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Federal University of Amazonas (DQ-UFAM) Universidade Estadual de Campinas (UNICAMP) Universidade Estadual Paulista (Unesp) Oswaldo Cruz Fundation (IGM/FIOCRUZ-BA) |
dc.contributor.author.fl_str_mv |
Costa, Renyer A. Barros, Gabriel de A. da Silva, Jonathas N. [UNESP] Oliveira, Kelson M. Bezerra, Daniel P. Soares, Milena B.P. Costa, Emmanoel V. |
dc.subject.por.fl_str_mv |
7,7-dimethylaporphine alkaloids Cytotoxicity DFT Docking HepG2 Molecular dynamics |
topic |
7,7-dimethylaporphine alkaloids Cytotoxicity DFT Docking HepG2 Molecular dynamics |
description |
In this study, guadiscine (G1) and guadiscidine (G2), 7,7-dimethylaporphine alkaloids from Guatteria friesiana, have they geometric paramaters, vibrational behavior and quantum chemical properties (HOMO-LUMO, MEP, ALIE and Fukui indices) analyzed through a theoretical view, by density functional theory (DFT), using the Becker's three-parameter hybrid exchange functional combined with the Lee–Yang–Parr correlation functional (B3LYP) and 6–311G(2d,p) and 6–311G++(2df,3p) basis sets. The obtained geometry data were compared with x-ray data for (−)-N-acetyl-anonaine, showing close values. Vibrational analysis, together with potential energy distribution (PED) calculations, revealed several characteristic vibrations that characterize the 7,7 dimethylaporphine skeleton, besides enabling the observation of intermolecular H-bonds through dimers formation. Molecular dynamic simulations were carried out, allowing to evaluate the solvation free energies of G1 and G2 in water, methanol and ethanol, as well as H-bonds formation between G1 and G2 and the tested solvents. The antineoplastic potential of the title molecules was evaluated via molecular docking calculations with topoisomerase I complexed with DNA. Guadiscine and guadiscidine showed, respectively, binding free energies of -8.0 and -8.5 kcal/mol, while topotecan, a DNA topoisomerase I inhibitor, showed a binding free energy value of -12 kcal/mol, indicating that the studied molecules are good topoisomerase I inhibitors. In vitro cytotoxicity assay with HepG2 cell line were performed, revealing significant antitumor potential for G2. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T10:19:41Z 2021-06-25T10:19:41Z 2021-04-05 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.molstruc.2020.129844 Journal of Molecular Structure, v. 1229. 0022-2860 http://hdl.handle.net/11449/205695 10.1016/j.molstruc.2020.129844 2-s2.0-85099005983 |
url |
http://dx.doi.org/10.1016/j.molstruc.2020.129844 http://hdl.handle.net/11449/205695 |
identifier_str_mv |
Journal of Molecular Structure, v. 1229. 0022-2860 10.1016/j.molstruc.2020.129844 2-s2.0-85099005983 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal of Molecular Structure |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129199379054592 |