Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa

Detalhes bibliográficos
Autor(a) principal: Van Sluys, M. A.
Data de Publicação: 2003
Outros Autores: de Oliveira, M. C., Monteiro-Vitorello, C. B., Miyaki, C. Y., Furlan, L. R., Camargo, LEA, da Silva, ACR, Moon, D. H., Takita, M. A., Lemos, EGM, Machado, M. A., Ferro, MIT, da Silva, F. R., Goldman, MHS, Goldman, G. H., Lemos, MVF, El-Dorry, H., Tsai, S. M., Carrer, H., Carraro, D. M., de Oliveira, R. C., Nunes, L. R., Siqueira, W. J., Coutinho, L. L., Kimura, E. T., Ferro, E. S., Harakava, R., Kuramae, E. E., Marino, C. L., Giglioti, E., Abreu, I. L., Alves, LMC, do Amaral, A. M., Baia, G. S., Blanco, SR, Brito, M. S., Cannavan, F. S., Celestino, A. V., da Cunha, A. F., Fenille, R. C., Ferro, J. A., Formighieri, E. F., Kishi, L. T., Leoni, S. G., Oliveira, A. R., Rosa, V. E., Sassaki, F. T., Sena, JAD, de Souza, A. A., Truffi, D., Tsukumo, F., Yanai, G. M., Zaros, L. G., Civerolo, E. L., Simpson, AJG, Almeida, N. F., Setubal, J. C., Kitajima, J. P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1128/JB.185.3.1018-1026.2003
http://hdl.handle.net/11449/36012
Resumo: Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X. fastidiosa has an unusually broad host range, has an extensive geographical distribution throughout the American continent, and induces diverse disease phenotypes. Previous molecular analyses indicated three distinct groups of X.fastidiosa isolates that were expected to be genetically divergent. Here we report the genome sequence of X. fastidiosa (Temecula strain), isolated from a naturally infected grapevine with Pierce's disease (PD) in a wine-grape-growing region of California. Comparative analyses with a previously sequenced X.fastidiosa strain responsible for citrus variegated chlorosis (CVC) revealed that 98% of the PD X.fastidiosa Temecula genes are shared with the CVC X. fastidiosa strain 9a5c genes. Furthermore, the average amino acid identity of the open reading frames in the strains is 95.7%. Genomic differences are limited to phage-associated chromosomal rearrangements and deletions that also account for the strain-specific genes present in each genome. Genomic islands, one in each genome, were identified, and their presence in other X.fastidiosa strains was analyzed. We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies.
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spelling Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosaXylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X. fastidiosa has an unusually broad host range, has an extensive geographical distribution throughout the American continent, and induces diverse disease phenotypes. Previous molecular analyses indicated three distinct groups of X.fastidiosa isolates that were expected to be genetically divergent. Here we report the genome sequence of X. fastidiosa (Temecula strain), isolated from a naturally infected grapevine with Pierce's disease (PD) in a wine-grape-growing region of California. Comparative analyses with a previously sequenced X.fastidiosa strain responsible for citrus variegated chlorosis (CVC) revealed that 98% of the PD X.fastidiosa Temecula genes are shared with the CVC X. fastidiosa strain 9a5c genes. Furthermore, the average amino acid identity of the open reading frames in the strains is 95.7%. Genomic differences are limited to phage-associated chromosomal rearrangements and deletions that also account for the strain-specific genes present in each genome. Genomic islands, one in each genome, were identified, and their presence in other X.fastidiosa strains was analyzed. We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies.Univ São Paulo, Inst Biociencias, Dept Bot, BR-05508900 São Paulo, BrazilUniv São Paulo, Inst Quim, BR-05508900 São Paulo, BrazilUniv São Paulo, Inst Ciências Biomed, BR-05508900 São Paulo, BrazilUniv São Paulo, Escola Super Agr Luiz de Queiroz, BR-13418900 Piracicaba, BrazilUniv São Paulo, Ctr Energia Nucl Agr, BR-13400970 Piracicaba, BrazilInst Agron Campinas, Ctr Citricultura Sylio Moreira, BR-13490970 Cordeiropolis, BrazilUniv Estadual Paulista, Fac Ciências Agr & Vet, BR-14884900 Jaboticabal, BrazilUniv Estadual Campinas, Ctr Biol Mol & Engn Genet, BR-13083970 Campinas, SP, BrazilUniv Estadual Campinas, Inst Biol, BR-13083970 Campinas, SP, BrazilUniv Estadual Campinas, Inst Comp, BR-13083970 Campinas, SP, BrazilUniv São Paulo, Fac Ciências Farmaceut, BR-14040901 Ribeirao Preto, BrazilUniv São Paulo, Fac Filosofia Ciências & Letras, BR-14040901 Ribeirao Preto, BrazilInst Ludwig Pesquisa Canc, BR-01509010 São Paulo, BrazilUniv Mogi das Cruzes, Nucleo Integrado Biotecnol, BR-08780911 Mogi das Cruzes, BrazilInst Agron Campinas, BR-13001970 Campinas, SP, BrazilInst Biol, BR-04014002 São Paulo, BrazilUniv Estadual Paulista, Fac Med Vet & Zootecnia, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Fac Ciências Agron, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Inst Biociencias, BR-18618000 Botucatu, SP, BrazilUniv Fed Sao Carlos, BR-13600970 São Paulo, BrazilUniv Fed Mato Grosso do Sul, Dept Comp & Estatist, BR-79070900 Campo Grande, MS, BrazilUSDA ARS, Parlier, CA 93648 USAUniv Estadual Paulista, Fac Ciências Agr & Vet, BR-14884900 Jaboticabal, BrazilUniv Estadual Paulista, Fac Med Vet & Zootecnia, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Fac Ciências Agron, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Inst Biociencias, BR-18618000 Botucatu, SP, BrazilAmer Soc MicrobiologyUniversidade de São Paulo (USP)Inst Agron CampinasUniversidade Estadual Paulista (Unesp)Universidade Estadual de Campinas (UNICAMP)Inst Ludwig Pesquisa CancUniv Mogi das CruzesUniversidade Federal de São Carlos (UFSCar)Universidade Federal de Mato Grosso do Sul (UFMS)USDA ARSVan Sluys, M. A.de Oliveira, M. C.Monteiro-Vitorello, C. B.Miyaki, C. Y.Furlan, L. R.Camargo, LEAda Silva, ACRMoon, D. H.Takita, M. A.Lemos, EGMMachado, M. A.Ferro, MITda Silva, F. R.Goldman, MHSGoldman, G. H.Lemos, MVFEl-Dorry, H.Tsai, S. M.Carrer, H.Carraro, D. M.de Oliveira, R. C.Nunes, L. R.Siqueira, W. J.Coutinho, L. L.Kimura, E. T.Ferro, E. S.Harakava, R.Kuramae, E. E.Marino, C. L.Giglioti, E.Abreu, I. L.Alves, LMCdo Amaral, A. M.Baia, G. S.Blanco, SRBrito, M. S.Cannavan, F. S.Celestino, A. V.da Cunha, A. F.Fenille, R. C.Ferro, J. A.Formighieri, E. F.Kishi, L. T.Leoni, S. G.Oliveira, A. R.Rosa, V. E.Sassaki, F. T.Sena, JADde Souza, A. A.Truffi, D.Tsukumo, F.Yanai, G. M.Zaros, L. G.Civerolo, E. L.Simpson, AJGAlmeida, N. F.Setubal, J. C.Kitajima, J. P.2014-05-20T15:25:38Z2014-05-20T15:25:38Z2003-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1018-1026application/pdfhttp://dx.doi.org/10.1128/JB.185.3.1018-1026.2003Journal of Bacteriology. Washington: Amer Soc Microbiology, v. 185, n. 3, p. 1018-1026, 2003.0021-9193http://hdl.handle.net/11449/3601210.1128/JB.185.3.1018-1026.2003WOS:000180834300035WOS000180834300035.pdf71792730606247616676176632132637014724172361246401653487382083190000-0003-4524-954XWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Bacteriology3.2191,885info:eu-repo/semantics/openAccess2023-12-24T06:17:32Zoai:repositorio.unesp.br:11449/36012Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-12-24T06:17:32Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
title Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
spellingShingle Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
Van Sluys, M. A.
title_short Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
title_full Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
title_fullStr Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
title_full_unstemmed Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
title_sort Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
author Van Sluys, M. A.
author_facet Van Sluys, M. A.
de Oliveira, M. C.
Monteiro-Vitorello, C. B.
Miyaki, C. Y.
Furlan, L. R.
Camargo, LEA
da Silva, ACR
Moon, D. H.
Takita, M. A.
Lemos, EGM
Machado, M. A.
Ferro, MIT
da Silva, F. R.
Goldman, MHS
Goldman, G. H.
Lemos, MVF
El-Dorry, H.
Tsai, S. M.
Carrer, H.
Carraro, D. M.
de Oliveira, R. C.
Nunes, L. R.
Siqueira, W. J.
Coutinho, L. L.
Kimura, E. T.
Ferro, E. S.
Harakava, R.
Kuramae, E. E.
Marino, C. L.
Giglioti, E.
Abreu, I. L.
Alves, LMC
do Amaral, A. M.
Baia, G. S.
Blanco, SR
Brito, M. S.
Cannavan, F. S.
Celestino, A. V.
da Cunha, A. F.
Fenille, R. C.
Ferro, J. A.
Formighieri, E. F.
Kishi, L. T.
Leoni, S. G.
Oliveira, A. R.
Rosa, V. E.
Sassaki, F. T.
Sena, JAD
de Souza, A. A.
Truffi, D.
Tsukumo, F.
Yanai, G. M.
Zaros, L. G.
Civerolo, E. L.
Simpson, AJG
Almeida, N. F.
Setubal, J. C.
Kitajima, J. P.
author_role author
author2 de Oliveira, M. C.
Monteiro-Vitorello, C. B.
Miyaki, C. Y.
Furlan, L. R.
Camargo, LEA
da Silva, ACR
Moon, D. H.
Takita, M. A.
Lemos, EGM
Machado, M. A.
Ferro, MIT
da Silva, F. R.
Goldman, MHS
Goldman, G. H.
Lemos, MVF
El-Dorry, H.
Tsai, S. M.
Carrer, H.
Carraro, D. M.
de Oliveira, R. C.
Nunes, L. R.
Siqueira, W. J.
Coutinho, L. L.
Kimura, E. T.
Ferro, E. S.
Harakava, R.
Kuramae, E. E.
Marino, C. L.
Giglioti, E.
Abreu, I. L.
Alves, LMC
do Amaral, A. M.
Baia, G. S.
Blanco, SR
Brito, M. S.
Cannavan, F. S.
Celestino, A. V.
da Cunha, A. F.
Fenille, R. C.
Ferro, J. A.
Formighieri, E. F.
Kishi, L. T.
Leoni, S. G.
Oliveira, A. R.
Rosa, V. E.
Sassaki, F. T.
Sena, JAD
de Souza, A. A.
Truffi, D.
Tsukumo, F.
Yanai, G. M.
Zaros, L. G.
Civerolo, E. L.
Simpson, AJG
Almeida, N. F.
Setubal, J. C.
Kitajima, J. P.
author2_role author
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dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Inst Agron Campinas
Universidade Estadual Paulista (Unesp)
Universidade Estadual de Campinas (UNICAMP)
Inst Ludwig Pesquisa Canc
Univ Mogi das Cruzes
Universidade Federal de São Carlos (UFSCar)
Universidade Federal de Mato Grosso do Sul (UFMS)
USDA ARS
dc.contributor.author.fl_str_mv Van Sluys, M. A.
de Oliveira, M. C.
Monteiro-Vitorello, C. B.
Miyaki, C. Y.
Furlan, L. R.
Camargo, LEA
da Silva, ACR
Moon, D. H.
Takita, M. A.
Lemos, EGM
Machado, M. A.
Ferro, MIT
da Silva, F. R.
Goldman, MHS
Goldman, G. H.
Lemos, MVF
El-Dorry, H.
Tsai, S. M.
Carrer, H.
Carraro, D. M.
de Oliveira, R. C.
Nunes, L. R.
Siqueira, W. J.
Coutinho, L. L.
Kimura, E. T.
Ferro, E. S.
Harakava, R.
Kuramae, E. E.
Marino, C. L.
Giglioti, E.
Abreu, I. L.
Alves, LMC
do Amaral, A. M.
Baia, G. S.
Blanco, SR
Brito, M. S.
Cannavan, F. S.
Celestino, A. V.
da Cunha, A. F.
Fenille, R. C.
Ferro, J. A.
Formighieri, E. F.
Kishi, L. T.
Leoni, S. G.
Oliveira, A. R.
Rosa, V. E.
Sassaki, F. T.
Sena, JAD
de Souza, A. A.
Truffi, D.
Tsukumo, F.
Yanai, G. M.
Zaros, L. G.
Civerolo, E. L.
Simpson, AJG
Almeida, N. F.
Setubal, J. C.
Kitajima, J. P.
description Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X. fastidiosa has an unusually broad host range, has an extensive geographical distribution throughout the American continent, and induces diverse disease phenotypes. Previous molecular analyses indicated three distinct groups of X.fastidiosa isolates that were expected to be genetically divergent. Here we report the genome sequence of X. fastidiosa (Temecula strain), isolated from a naturally infected grapevine with Pierce's disease (PD) in a wine-grape-growing region of California. Comparative analyses with a previously sequenced X.fastidiosa strain responsible for citrus variegated chlorosis (CVC) revealed that 98% of the PD X.fastidiosa Temecula genes are shared with the CVC X. fastidiosa strain 9a5c genes. Furthermore, the average amino acid identity of the open reading frames in the strains is 95.7%. Genomic differences are limited to phage-associated chromosomal rearrangements and deletions that also account for the strain-specific genes present in each genome. Genomic islands, one in each genome, were identified, and their presence in other X.fastidiosa strains was analyzed. We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies.
publishDate 2003
dc.date.none.fl_str_mv 2003-02-01
2014-05-20T15:25:38Z
2014-05-20T15:25:38Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1128/JB.185.3.1018-1026.2003
Journal of Bacteriology. Washington: Amer Soc Microbiology, v. 185, n. 3, p. 1018-1026, 2003.
0021-9193
http://hdl.handle.net/11449/36012
10.1128/JB.185.3.1018-1026.2003
WOS:000180834300035
WOS000180834300035.pdf
7179273060624761
6676176632132637
0147241723612464
0165348738208319
0000-0003-4524-954X
url http://dx.doi.org/10.1128/JB.185.3.1018-1026.2003
http://hdl.handle.net/11449/36012
identifier_str_mv Journal of Bacteriology. Washington: Amer Soc Microbiology, v. 185, n. 3, p. 1018-1026, 2003.
0021-9193
10.1128/JB.185.3.1018-1026.2003
WOS:000180834300035
WOS000180834300035.pdf
7179273060624761
6676176632132637
0147241723612464
0165348738208319
0000-0003-4524-954X
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Bacteriology
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dc.format.none.fl_str_mv 1018-1026
application/pdf
dc.publisher.none.fl_str_mv Amer Soc Microbiology
publisher.none.fl_str_mv Amer Soc Microbiology
dc.source.none.fl_str_mv Web of Science
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