Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
Autor(a) principal: | |
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Data de Publicação: | 2003 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
DOI: | 10.1128/JB.185.3.1018-1026.2003 |
Texto Completo: | http://dx.doi.org/10.1128/JB.185.3.1018-1026.2003 http://hdl.handle.net/11449/36012 |
Resumo: | Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X. fastidiosa has an unusually broad host range, has an extensive geographical distribution throughout the American continent, and induces diverse disease phenotypes. Previous molecular analyses indicated three distinct groups of X.fastidiosa isolates that were expected to be genetically divergent. Here we report the genome sequence of X. fastidiosa (Temecula strain), isolated from a naturally infected grapevine with Pierce's disease (PD) in a wine-grape-growing region of California. Comparative analyses with a previously sequenced X.fastidiosa strain responsible for citrus variegated chlorosis (CVC) revealed that 98% of the PD X.fastidiosa Temecula genes are shared with the CVC X. fastidiosa strain 9a5c genes. Furthermore, the average amino acid identity of the open reading frames in the strains is 95.7%. Genomic differences are limited to phage-associated chromosomal rearrangements and deletions that also account for the strain-specific genes present in each genome. Genomic islands, one in each genome, were identified, and their presence in other X.fastidiosa strains was analyzed. We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies. |
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Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosaXylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X. fastidiosa has an unusually broad host range, has an extensive geographical distribution throughout the American continent, and induces diverse disease phenotypes. Previous molecular analyses indicated three distinct groups of X.fastidiosa isolates that were expected to be genetically divergent. Here we report the genome sequence of X. fastidiosa (Temecula strain), isolated from a naturally infected grapevine with Pierce's disease (PD) in a wine-grape-growing region of California. Comparative analyses with a previously sequenced X.fastidiosa strain responsible for citrus variegated chlorosis (CVC) revealed that 98% of the PD X.fastidiosa Temecula genes are shared with the CVC X. fastidiosa strain 9a5c genes. Furthermore, the average amino acid identity of the open reading frames in the strains is 95.7%. Genomic differences are limited to phage-associated chromosomal rearrangements and deletions that also account for the strain-specific genes present in each genome. Genomic islands, one in each genome, were identified, and their presence in other X.fastidiosa strains was analyzed. We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies.Univ São Paulo, Inst Biociencias, Dept Bot, BR-05508900 São Paulo, BrazilUniv São Paulo, Inst Quim, BR-05508900 São Paulo, BrazilUniv São Paulo, Inst Ciências Biomed, BR-05508900 São Paulo, BrazilUniv São Paulo, Escola Super Agr Luiz de Queiroz, BR-13418900 Piracicaba, BrazilUniv São Paulo, Ctr Energia Nucl Agr, BR-13400970 Piracicaba, BrazilInst Agron Campinas, Ctr Citricultura Sylio Moreira, BR-13490970 Cordeiropolis, BrazilUniv Estadual Paulista, Fac Ciências Agr & Vet, BR-14884900 Jaboticabal, BrazilUniv Estadual Campinas, Ctr Biol Mol & Engn Genet, BR-13083970 Campinas, SP, BrazilUniv Estadual Campinas, Inst Biol, BR-13083970 Campinas, SP, BrazilUniv Estadual Campinas, Inst Comp, BR-13083970 Campinas, SP, BrazilUniv São Paulo, Fac Ciências Farmaceut, BR-14040901 Ribeirao Preto, BrazilUniv São Paulo, Fac Filosofia Ciências & Letras, BR-14040901 Ribeirao Preto, BrazilInst Ludwig Pesquisa Canc, BR-01509010 São Paulo, BrazilUniv Mogi das Cruzes, Nucleo Integrado Biotecnol, BR-08780911 Mogi das Cruzes, BrazilInst Agron Campinas, BR-13001970 Campinas, SP, BrazilInst Biol, BR-04014002 São Paulo, BrazilUniv Estadual Paulista, Fac Med Vet & Zootecnia, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Fac Ciências Agron, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Inst Biociencias, BR-18618000 Botucatu, SP, BrazilUniv Fed Sao Carlos, BR-13600970 São Paulo, BrazilUniv Fed Mato Grosso do Sul, Dept Comp & Estatist, BR-79070900 Campo Grande, MS, BrazilUSDA ARS, Parlier, CA 93648 USAUniv Estadual Paulista, Fac Ciências Agr & Vet, BR-14884900 Jaboticabal, BrazilUniv Estadual Paulista, Fac Med Vet & Zootecnia, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Fac Ciências Agron, BR-18603970 Botucatu, SP, BrazilUniv Estadual Paulista, Inst Biociencias, BR-18618000 Botucatu, SP, BrazilAmer Soc MicrobiologyUniversidade de São Paulo (USP)Inst Agron CampinasUniversidade Estadual Paulista (Unesp)Universidade Estadual de Campinas (UNICAMP)Inst Ludwig Pesquisa CancUniv Mogi das CruzesUniversidade Federal de São Carlos (UFSCar)Universidade Federal de Mato Grosso do Sul (UFMS)USDA ARSVan Sluys, M. A.de Oliveira, M. C.Monteiro-Vitorello, C. B.Miyaki, C. Y.Furlan, L. R.Camargo, LEAda Silva, ACRMoon, D. H.Takita, M. A.Lemos, EGMMachado, M. A.Ferro, MITda Silva, F. R.Goldman, MHSGoldman, G. H.Lemos, MVFEl-Dorry, H.Tsai, S. M.Carrer, H.Carraro, D. M.de Oliveira, R. C.Nunes, L. R.Siqueira, W. J.Coutinho, L. L.Kimura, E. T.Ferro, E. S.Harakava, R.Kuramae, E. E.Marino, C. L.Giglioti, E.Abreu, I. L.Alves, LMCdo Amaral, A. M.Baia, G. S.Blanco, SRBrito, M. S.Cannavan, F. S.Celestino, A. V.da Cunha, A. F.Fenille, R. C.Ferro, J. A.Formighieri, E. F.Kishi, L. T.Leoni, S. G.Oliveira, A. R.Rosa, V. E.Sassaki, F. T.Sena, JADde Souza, A. A.Truffi, D.Tsukumo, F.Yanai, G. M.Zaros, L. G.Civerolo, E. L.Simpson, AJGAlmeida, N. F.Setubal, J. C.Kitajima, J. P.2014-05-20T15:25:38Z2014-05-20T15:25:38Z2003-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1018-1026application/pdfhttp://dx.doi.org/10.1128/JB.185.3.1018-1026.2003Journal of Bacteriology. Washington: Amer Soc Microbiology, v. 185, n. 3, p. 1018-1026, 2003.0021-9193http://hdl.handle.net/11449/3601210.1128/JB.185.3.1018-1026.2003WOS:000180834300035WOS000180834300035.pdf71792730606247616676176632132637014724172361246401653487382083190000-0003-4524-954XWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Bacteriology3.2191,885info:eu-repo/semantics/openAccess2024-06-07T15:32:22Zoai:repositorio.unesp.br:11449/36012Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:10:31.577879Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa |
title |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa |
spellingShingle |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa Van Sluys, M. A. Van Sluys, M. A. |
title_short |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa |
title_full |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa |
title_fullStr |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa |
title_full_unstemmed |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa |
title_sort |
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa |
author |
Van Sluys, M. A. |
author_facet |
Van Sluys, M. A. Van Sluys, M. A. de Oliveira, M. C. Monteiro-Vitorello, C. B. Miyaki, C. Y. Furlan, L. R. Camargo, LEA da Silva, ACR Moon, D. H. Takita, M. A. Lemos, EGM Machado, M. A. Ferro, MIT da Silva, F. R. Goldman, MHS Goldman, G. H. Lemos, MVF El-Dorry, H. Tsai, S. M. Carrer, H. Carraro, D. M. de Oliveira, R. C. Nunes, L. R. Siqueira, W. J. Coutinho, L. L. Kimura, E. T. Ferro, E. S. Harakava, R. Kuramae, E. E. Marino, C. L. Giglioti, E. Abreu, I. L. Alves, LMC do Amaral, A. M. Baia, G. S. Blanco, SR Brito, M. S. Cannavan, F. S. Celestino, A. V. da Cunha, A. F. Fenille, R. C. Ferro, J. A. Formighieri, E. F. Kishi, L. T. Leoni, S. G. Oliveira, A. R. Rosa, V. E. Sassaki, F. T. Sena, JAD de Souza, A. A. Truffi, D. Tsukumo, F. Yanai, G. M. Zaros, L. G. Civerolo, E. L. Simpson, AJG Almeida, N. F. Setubal, J. C. Kitajima, J. P. de Oliveira, M. C. Monteiro-Vitorello, C. B. Miyaki, C. Y. Furlan, L. R. Camargo, LEA da Silva, ACR Moon, D. H. Takita, M. A. Lemos, EGM Machado, M. A. Ferro, MIT da Silva, F. R. Goldman, MHS Goldman, G. H. Lemos, MVF El-Dorry, H. Tsai, S. M. Carrer, H. Carraro, D. M. de Oliveira, R. C. Nunes, L. R. Siqueira, W. J. Coutinho, L. L. Kimura, E. T. Ferro, E. S. Harakava, R. Kuramae, E. E. Marino, C. L. Giglioti, E. Abreu, I. L. Alves, LMC do Amaral, A. M. Baia, G. S. Blanco, SR Brito, M. S. Cannavan, F. S. Celestino, A. V. da Cunha, A. F. Fenille, R. C. Ferro, J. A. Formighieri, E. F. Kishi, L. T. Leoni, S. G. Oliveira, A. R. Rosa, V. E. Sassaki, F. T. Sena, JAD de Souza, A. A. Truffi, D. Tsukumo, F. Yanai, G. M. Zaros, L. G. Civerolo, E. L. Simpson, AJG Almeida, N. F. Setubal, J. C. Kitajima, J. P. |
author_role |
author |
author2 |
de Oliveira, M. C. Monteiro-Vitorello, C. B. Miyaki, C. Y. Furlan, L. R. Camargo, LEA da Silva, ACR Moon, D. H. Takita, M. A. Lemos, EGM Machado, M. A. Ferro, MIT da Silva, F. R. Goldman, MHS Goldman, G. H. Lemos, MVF El-Dorry, H. Tsai, S. M. Carrer, H. Carraro, D. M. de Oliveira, R. C. Nunes, L. R. Siqueira, W. J. Coutinho, L. L. Kimura, E. T. Ferro, E. S. Harakava, R. Kuramae, E. E. Marino, C. L. Giglioti, E. Abreu, I. L. Alves, LMC do Amaral, A. M. Baia, G. S. Blanco, SR Brito, M. S. Cannavan, F. S. Celestino, A. V. da Cunha, A. F. Fenille, R. C. Ferro, J. A. Formighieri, E. F. Kishi, L. T. Leoni, S. G. Oliveira, A. R. Rosa, V. E. Sassaki, F. T. Sena, JAD de Souza, A. A. Truffi, D. Tsukumo, F. Yanai, G. M. Zaros, L. G. Civerolo, E. L. Simpson, AJG Almeida, N. F. Setubal, J. C. Kitajima, J. P. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Inst Agron Campinas Universidade Estadual Paulista (Unesp) Universidade Estadual de Campinas (UNICAMP) Inst Ludwig Pesquisa Canc Univ Mogi das Cruzes Universidade Federal de São Carlos (UFSCar) Universidade Federal de Mato Grosso do Sul (UFMS) USDA ARS |
dc.contributor.author.fl_str_mv |
Van Sluys, M. A. de Oliveira, M. C. Monteiro-Vitorello, C. B. Miyaki, C. Y. Furlan, L. R. Camargo, LEA da Silva, ACR Moon, D. H. Takita, M. A. Lemos, EGM Machado, M. A. Ferro, MIT da Silva, F. R. Goldman, MHS Goldman, G. H. Lemos, MVF El-Dorry, H. Tsai, S. M. Carrer, H. Carraro, D. M. de Oliveira, R. C. Nunes, L. R. Siqueira, W. J. Coutinho, L. L. Kimura, E. T. Ferro, E. S. Harakava, R. Kuramae, E. E. Marino, C. L. Giglioti, E. Abreu, I. L. Alves, LMC do Amaral, A. M. Baia, G. S. Blanco, SR Brito, M. S. Cannavan, F. S. Celestino, A. V. da Cunha, A. F. Fenille, R. C. Ferro, J. A. Formighieri, E. F. Kishi, L. T. Leoni, S. G. Oliveira, A. R. Rosa, V. E. Sassaki, F. T. Sena, JAD de Souza, A. A. Truffi, D. Tsukumo, F. Yanai, G. M. Zaros, L. G. Civerolo, E. L. Simpson, AJG Almeida, N. F. Setubal, J. C. Kitajima, J. P. |
description |
Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X. fastidiosa has an unusually broad host range, has an extensive geographical distribution throughout the American continent, and induces diverse disease phenotypes. Previous molecular analyses indicated three distinct groups of X.fastidiosa isolates that were expected to be genetically divergent. Here we report the genome sequence of X. fastidiosa (Temecula strain), isolated from a naturally infected grapevine with Pierce's disease (PD) in a wine-grape-growing region of California. Comparative analyses with a previously sequenced X.fastidiosa strain responsible for citrus variegated chlorosis (CVC) revealed that 98% of the PD X.fastidiosa Temecula genes are shared with the CVC X. fastidiosa strain 9a5c genes. Furthermore, the average amino acid identity of the open reading frames in the strains is 95.7%. Genomic differences are limited to phage-associated chromosomal rearrangements and deletions that also account for the strain-specific genes present in each genome. Genomic islands, one in each genome, were identified, and their presence in other X.fastidiosa strains was analyzed. We conclude that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies. |
publishDate |
2003 |
dc.date.none.fl_str_mv |
2003-02-01 2014-05-20T15:25:38Z 2014-05-20T15:25:38Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1128/JB.185.3.1018-1026.2003 Journal of Bacteriology. Washington: Amer Soc Microbiology, v. 185, n. 3, p. 1018-1026, 2003. 0021-9193 http://hdl.handle.net/11449/36012 10.1128/JB.185.3.1018-1026.2003 WOS:000180834300035 WOS000180834300035.pdf 7179273060624761 6676176632132637 0147241723612464 0165348738208319 0000-0003-4524-954X |
url |
http://dx.doi.org/10.1128/JB.185.3.1018-1026.2003 http://hdl.handle.net/11449/36012 |
identifier_str_mv |
Journal of Bacteriology. Washington: Amer Soc Microbiology, v. 185, n. 3, p. 1018-1026, 2003. 0021-9193 10.1128/JB.185.3.1018-1026.2003 WOS:000180834300035 WOS000180834300035.pdf 7179273060624761 6676176632132637 0147241723612464 0165348738208319 0000-0003-4524-954X |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal of Bacteriology 3.219 1,885 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1018-1026 application/pdf |
dc.publisher.none.fl_str_mv |
Amer Soc Microbiology |
publisher.none.fl_str_mv |
Amer Soc Microbiology |
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Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
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Universidade Estadual Paulista (UNESP) |
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UNESP |
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Repositório Institucional da UNESP |
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Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
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1822182266993901568 |
dc.identifier.doi.none.fl_str_mv |
10.1128/JB.185.3.1018-1026.2003 |