Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues

Detalhes bibliográficos
Autor(a) principal: Carvalho, Thabata [UNESP]
Data de Publicação: 2017
Outros Autores: Garcia, Giuliana [UNESP], Carvalho, Carolina Silva [UNESP], Palma-silva, Clarisse [UNESP], Culot, Laurence [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1590/2236-8906-22/2017
http://hdl.handle.net/11449/212227
Resumo: Nine polymorphic microsatellite loci were isolated and characterized for Cryptocarya mandioccana Meisner, a tree from the Atlantic Rainforest with seeds dispersed by large animals. The loci were characterized using 48 individuals from two populations and their genotyping success tested in four tissues: leaves from adults and seedlings, and two diaspore maternal tissues. Maternity analyses were also performed on diaspores and leaves from nine adult trees. The number of alleles per locus ranged from nine to 15 and the observed and expected heterozygosities ranged from 0.214 to 0.864 and 0.745 to 0.892, respectively. The loci genotyping success did not significantly differ between tissues and varied from 56 to 96%. The microsatellites showed enough polymorphism to assign the nine adult trees to their diaspores. The successful genotyping in all tissues and identification of mother trees show that the microsatellites are suitable for studies such as spatial genetic structure and maternity analyses.
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spelling Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissuesDesenvolvimento de locos de microssatélites para Cryptocarya mandioccana Meisner (Lauraceae) e o sucesso de genotipagem em diferentes tecidosAtlantic forestLauraceaematernity analysismicrosatelliteseed maternal tissueanálise de maternidadeLauraceaeMata Atlânticamicrossatélitetecido materno das sementesNine polymorphic microsatellite loci were isolated and characterized for Cryptocarya mandioccana Meisner, a tree from the Atlantic Rainforest with seeds dispersed by large animals. The loci were characterized using 48 individuals from two populations and their genotyping success tested in four tissues: leaves from adults and seedlings, and two diaspore maternal tissues. Maternity analyses were also performed on diaspores and leaves from nine adult trees. The number of alleles per locus ranged from nine to 15 and the observed and expected heterozygosities ranged from 0.214 to 0.864 and 0.745 to 0.892, respectively. The loci genotyping success did not significantly differ between tissues and varied from 56 to 96%. The microsatellites showed enough polymorphism to assign the nine adult trees to their diaspores. The successful genotyping in all tissues and identification of mother trees show that the microsatellites are suitable for studies such as spatial genetic structure and maternity analyses.Nove locos de microssatélites polimórficos foram isolados e caracterizados para Cryptocarya mandioccana Meisner, uma árvore da Mata Atlântica cujas sementes são dispersas por grandes animais. Os locos foram caracterizados usando 48 indivíduos de duas populações e o sucesso de genotipagem testado em quatro tecidos: folhas de adultos e plântulas, e dois tecidos maternos de diásporos. Análises de maternidade foram também realizadas em diásporos e folhas de nove árvores adultas. O número de alelos por loco variou de nove a 15 e as heterozigosidades observada e esperada de 0,214 a 0,864 e 0,745 a 0,892, respectivamente. O sucesso de genotipagem dos locos não diferiu entre os tecidos e variou de 56 a 96%. Os microssatélites mostraram polimorfismo suficiente para atribuir as nove árvores aos seus diásporos. O sucesso de genotipagem em todos os tecidos e a identificação das árvores mães mostraram que os microssatélites são adequados para estudos como estrutura genética espacial e análise de maternidade.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Universidade Estadual Paulista Júlio de Mesquita Filho, Instituto de BiociênciasUniversidade Estadual Paulista Júlio de Mesquita Filho, Instituto de BiociênciasFAPESP: 2014/20621-2; 2014/20622-9; 2014/01029-5; 2010/16075-1; 2009/52725-3; 2014/14739-0CAPES: 009/10CNPq: 456549/2014-5Instituto de BotânicaUniversidade Estadual Paulista (Unesp)Carvalho, Thabata [UNESP]Garcia, Giuliana [UNESP]Carvalho, Carolina Silva [UNESP]Palma-silva, Clarisse [UNESP]Culot, Laurence [UNESP]2021-07-14T10:36:37Z2021-07-14T10:36:37Z2017info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article580-587application/pdfhttp://dx.doi.org/10.1590/2236-8906-22/2017Hoehnea. Instituto de Botânica, v. 44, n. 4, p. 580-587, 2017.0073-28772236-8906http://hdl.handle.net/11449/21222710.1590/2236-8906-22/2017S2236-89062017000400580S2236-89062017000400580.pdfSciELOreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengHoehneainfo:eu-repo/semantics/openAccess2023-11-15T06:18:43Zoai:repositorio.unesp.br:11449/212227Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:47:45.952921Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
Desenvolvimento de locos de microssatélites para Cryptocarya mandioccana Meisner (Lauraceae) e o sucesso de genotipagem em diferentes tecidos
title Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
spellingShingle Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
Carvalho, Thabata [UNESP]
Atlantic forest
Lauraceae
maternity analysis
microsatellite
seed maternal tissue
análise de maternidade
Lauraceae
Mata Atlântica
microssatélite
tecido materno das sementes
title_short Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
title_full Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
title_fullStr Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
title_full_unstemmed Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
title_sort Development of microsatellite loci for Cryptocarya mandioccana Meisner (Lauraceae) and their genotyping success in different tissues
author Carvalho, Thabata [UNESP]
author_facet Carvalho, Thabata [UNESP]
Garcia, Giuliana [UNESP]
Carvalho, Carolina Silva [UNESP]
Palma-silva, Clarisse [UNESP]
Culot, Laurence [UNESP]
author_role author
author2 Garcia, Giuliana [UNESP]
Carvalho, Carolina Silva [UNESP]
Palma-silva, Clarisse [UNESP]
Culot, Laurence [UNESP]
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Carvalho, Thabata [UNESP]
Garcia, Giuliana [UNESP]
Carvalho, Carolina Silva [UNESP]
Palma-silva, Clarisse [UNESP]
Culot, Laurence [UNESP]
dc.subject.por.fl_str_mv Atlantic forest
Lauraceae
maternity analysis
microsatellite
seed maternal tissue
análise de maternidade
Lauraceae
Mata Atlântica
microssatélite
tecido materno das sementes
topic Atlantic forest
Lauraceae
maternity analysis
microsatellite
seed maternal tissue
análise de maternidade
Lauraceae
Mata Atlântica
microssatélite
tecido materno das sementes
description Nine polymorphic microsatellite loci were isolated and characterized for Cryptocarya mandioccana Meisner, a tree from the Atlantic Rainforest with seeds dispersed by large animals. The loci were characterized using 48 individuals from two populations and their genotyping success tested in four tissues: leaves from adults and seedlings, and two diaspore maternal tissues. Maternity analyses were also performed on diaspores and leaves from nine adult trees. The number of alleles per locus ranged from nine to 15 and the observed and expected heterozygosities ranged from 0.214 to 0.864 and 0.745 to 0.892, respectively. The loci genotyping success did not significantly differ between tissues and varied from 56 to 96%. The microsatellites showed enough polymorphism to assign the nine adult trees to their diaspores. The successful genotyping in all tissues and identification of mother trees show that the microsatellites are suitable for studies such as spatial genetic structure and maternity analyses.
publishDate 2017
dc.date.none.fl_str_mv 2017
2021-07-14T10:36:37Z
2021-07-14T10:36:37Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/2236-8906-22/2017
Hoehnea. Instituto de Botânica, v. 44, n. 4, p. 580-587, 2017.
0073-2877
2236-8906
http://hdl.handle.net/11449/212227
10.1590/2236-8906-22/2017
S2236-89062017000400580
S2236-89062017000400580.pdf
url http://dx.doi.org/10.1590/2236-8906-22/2017
http://hdl.handle.net/11449/212227
identifier_str_mv Hoehnea. Instituto de Botânica, v. 44, n. 4, p. 580-587, 2017.
0073-2877
2236-8906
10.1590/2236-8906-22/2017
S2236-89062017000400580
S2236-89062017000400580.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Hoehnea
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 580-587
application/pdf
dc.publisher.none.fl_str_mv Instituto de Botânica
publisher.none.fl_str_mv Instituto de Botânica
dc.source.none.fl_str_mv SciELO
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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