Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.

Detalhes bibliográficos
Autor(a) principal: Coelho, Natália Helena Pesso
Data de Publicação: 2018
Outros Autores: Tambarussi, Evandro Vagner [UNESP], Aguiar, Bruna Ibanes, Roque, Rafael H., Portela, Renan Marcelo, Braga, Rayssa Chaves, Sanson, Daniela, Silva, Richeliel A. R., Ferraz, Elza Martins, Moreno, Maria Andréia, Kageyama, Paulo Y., Gandara, Flávio Bertin
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/s10592-018-1061-z
http://hdl.handle.net/11449/170806
Resumo: Acrocomia aculeata is a native palm distributed widely throughout Brazil that is used in a diverse array of products from the food industry to biodiesel oil production. This study uses nine microsatellite loci to assess the genetic diversity, spatial genetic structure (SGS), and mating system of A. aculeata. A total of 200 samples were collected from four populations (Fusquinha—FU, Padre Josimo—PJ, Gleba XV-GB, and Amparo—AM), in São Paulo State, Brazil. We also collected fruits from 20 randomly selected seed trees in the FU population to assess mating patterns, for a total of 246 genotyped embryos. We identified a total of 103 alleles and all loci were polymorphic. The average observed heterozygosity (Ho) ranged from 0.410 (AM) to 0.531 (FU) and expected heterozygosity (He) ranged from 0.547 (PJ) to 0.615 (GB). The average fixation index (F) ranged from 0.043 to 0.254 for FU and AM populations, respectively. The coancestry coefficient (θx y) was significant up to 38 m in PJ the population and 71 m in AM. Individual palm outcrossing rates were predominantly high (tm = 0.985) and the paternity correlation (rp(m) = 0.02) was significantly low, indicating a high probability of the occurrence of half-sibs. Compared to other palm species, the studied populations show high levels of genetic diversity. Our results confirm that A. aculeata is primarily allogamous, with no significant paternity correlation, and seeds should be harvested from at least 40 trees to ensure high levels of genetic diversity in seed collection programs.
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spelling Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.Brazilian Atlantic forestConservation geneticsMicrosatellite markersPopulation geneticsTropical palm speciesAcrocomia aculeata is a native palm distributed widely throughout Brazil that is used in a diverse array of products from the food industry to biodiesel oil production. This study uses nine microsatellite loci to assess the genetic diversity, spatial genetic structure (SGS), and mating system of A. aculeata. A total of 200 samples were collected from four populations (Fusquinha—FU, Padre Josimo—PJ, Gleba XV-GB, and Amparo—AM), in São Paulo State, Brazil. We also collected fruits from 20 randomly selected seed trees in the FU population to assess mating patterns, for a total of 246 genotyped embryos. We identified a total of 103 alleles and all loci were polymorphic. The average observed heterozygosity (Ho) ranged from 0.410 (AM) to 0.531 (FU) and expected heterozygosity (He) ranged from 0.547 (PJ) to 0.615 (GB). The average fixation index (F) ranged from 0.043 to 0.254 for FU and AM populations, respectively. The coancestry coefficient (θx y) was significant up to 38 m in PJ the population and 71 m in AM. Individual palm outcrossing rates were predominantly high (tm = 0.985) and the paternity correlation (rp(m) = 0.02) was significantly low, indicating a high probability of the occurrence of half-sibs. Compared to other palm species, the studied populations show high levels of genetic diversity. Our results confirm that A. aculeata is primarily allogamous, with no significant paternity correlation, and seeds should be harvested from at least 40 trees to ensure high levels of genetic diversity in seed collection programs.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Escola Superior de Agricultura “Luiz de Queiroz” University of São Paulo, Av. Padua Dias, 11, PO Box 9Universidade Estadual do Centro-Oeste, PR 153, Km 7, RiozinhoPrograma de Pós-Graduação em Ciência Florestal – FCA/UNESP – Rua José Barbosa de Barros, 1780, Portaria II: Rodovia Alcides Soares, Km 3Programa de Pós-Graduação em Ciência Florestal – FCA/UNESP – Rua José Barbosa de Barros, 1780, Portaria II: Rodovia Alcides Soares, Km 3FAPESP: 2013/23168-4Universidade de São Paulo (USP)Universidade Estadual do Centro-OesteUniversidade Estadual Paulista (Unesp)Coelho, Natália Helena PessoTambarussi, Evandro Vagner [UNESP]Aguiar, Bruna IbanesRoque, Rafael H.Portela, Renan MarceloBraga, Rayssa ChavesSanson, DanielaSilva, Richeliel A. R.Ferraz, Elza MartinsMoreno, Maria AndréiaKageyama, Paulo Y.Gandara, Flávio Bertin2018-12-11T16:52:30Z2018-12-11T16:52:30Z2018-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article879-891application/pdfhttp://dx.doi.org/10.1007/s10592-018-1061-zConservation Genetics, v. 19, n. 4, p. 879-891, 2018.1572-97371566-0621http://hdl.handle.net/11449/17080610.1007/s10592-018-1061-z2-s2.0-850442463312-s2.0-85044246331.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengConservation Genetics0,924info:eu-repo/semantics/openAccess2023-11-09T06:12:31Zoai:repositorio.unesp.br:11449/170806Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-11-09T06:12:31Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
title Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
spellingShingle Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
Coelho, Natália Helena Pesso
Brazilian Atlantic forest
Conservation genetics
Microsatellite markers
Population genetics
Tropical palm species
title_short Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
title_full Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
title_fullStr Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
title_full_unstemmed Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
title_sort Understanding genetic diversity, spatial genetic structure, and mating system through microsatellite markers for the conservation and sustainable use of Acrocomia aculeata (Jacq.) Lodd. Ex Mart.
author Coelho, Natália Helena Pesso
author_facet Coelho, Natália Helena Pesso
Tambarussi, Evandro Vagner [UNESP]
Aguiar, Bruna Ibanes
Roque, Rafael H.
Portela, Renan Marcelo
Braga, Rayssa Chaves
Sanson, Daniela
Silva, Richeliel A. R.
Ferraz, Elza Martins
Moreno, Maria Andréia
Kageyama, Paulo Y.
Gandara, Flávio Bertin
author_role author
author2 Tambarussi, Evandro Vagner [UNESP]
Aguiar, Bruna Ibanes
Roque, Rafael H.
Portela, Renan Marcelo
Braga, Rayssa Chaves
Sanson, Daniela
Silva, Richeliel A. R.
Ferraz, Elza Martins
Moreno, Maria Andréia
Kageyama, Paulo Y.
Gandara, Flávio Bertin
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Universidade Estadual do Centro-Oeste
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Coelho, Natália Helena Pesso
Tambarussi, Evandro Vagner [UNESP]
Aguiar, Bruna Ibanes
Roque, Rafael H.
Portela, Renan Marcelo
Braga, Rayssa Chaves
Sanson, Daniela
Silva, Richeliel A. R.
Ferraz, Elza Martins
Moreno, Maria Andréia
Kageyama, Paulo Y.
Gandara, Flávio Bertin
dc.subject.por.fl_str_mv Brazilian Atlantic forest
Conservation genetics
Microsatellite markers
Population genetics
Tropical palm species
topic Brazilian Atlantic forest
Conservation genetics
Microsatellite markers
Population genetics
Tropical palm species
description Acrocomia aculeata is a native palm distributed widely throughout Brazil that is used in a diverse array of products from the food industry to biodiesel oil production. This study uses nine microsatellite loci to assess the genetic diversity, spatial genetic structure (SGS), and mating system of A. aculeata. A total of 200 samples were collected from four populations (Fusquinha—FU, Padre Josimo—PJ, Gleba XV-GB, and Amparo—AM), in São Paulo State, Brazil. We also collected fruits from 20 randomly selected seed trees in the FU population to assess mating patterns, for a total of 246 genotyped embryos. We identified a total of 103 alleles and all loci were polymorphic. The average observed heterozygosity (Ho) ranged from 0.410 (AM) to 0.531 (FU) and expected heterozygosity (He) ranged from 0.547 (PJ) to 0.615 (GB). The average fixation index (F) ranged from 0.043 to 0.254 for FU and AM populations, respectively. The coancestry coefficient (θx y) was significant up to 38 m in PJ the population and 71 m in AM. Individual palm outcrossing rates were predominantly high (tm = 0.985) and the paternity correlation (rp(m) = 0.02) was significantly low, indicating a high probability of the occurrence of half-sibs. Compared to other palm species, the studied populations show high levels of genetic diversity. Our results confirm that A. aculeata is primarily allogamous, with no significant paternity correlation, and seeds should be harvested from at least 40 trees to ensure high levels of genetic diversity in seed collection programs.
publishDate 2018
dc.date.none.fl_str_mv 2018-12-11T16:52:30Z
2018-12-11T16:52:30Z
2018-08-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s10592-018-1061-z
Conservation Genetics, v. 19, n. 4, p. 879-891, 2018.
1572-9737
1566-0621
http://hdl.handle.net/11449/170806
10.1007/s10592-018-1061-z
2-s2.0-85044246331
2-s2.0-85044246331.pdf
url http://dx.doi.org/10.1007/s10592-018-1061-z
http://hdl.handle.net/11449/170806
identifier_str_mv Conservation Genetics, v. 19, n. 4, p. 879-891, 2018.
1572-9737
1566-0621
10.1007/s10592-018-1061-z
2-s2.0-85044246331
2-s2.0-85044246331.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Conservation Genetics
0,924
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 879-891
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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