Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts

Detalhes bibliográficos
Autor(a) principal: Charlie-Silva, Ives
Data de Publicação: 2022
Outros Autores: Feitosa, Natália M., Pontes, Leticia G., Fernandes, Bianca H., Nóbrega, Rafael H. [UNESP], Gomes, Juliana M. M., Prata, Mariana N. L., Ferraris, Fausto K., Melo, Daniela C., Conde, Gabriel [UNESP], Rodrigues, Letícia F. [UNESP], Aracati, Mayumi F. [UNESP], Corrêa-Junior, José D., Manrique, Wilson G., Superio, Joshua, Garcez, Aguinaldo S., Conceição, Katia, Yoshimura, Tania M., Núñez, Silvia C., Eto, Silas F., Fernandes, Dayanne C. [UNESP], Freitas, Anderson Z., Ribeiro, Martha S., Nedoluzhko, Artem, Lopes-Ferreira, Mônica, Borra, Ricardo C., Barcellos, Leonardo J. G., Perez, Andrea C., Malafaia, Guilheme, Cunha, Thiago M., Belo, Marco A. A. [UNESP], Galindo-Villegas, Jorge
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3389/fimmu.2022.1019201
http://hdl.handle.net/11449/248989
Resumo: Regulation of inflammation is a critical process for maintaining physiological homeostasis. The λ-carrageenan (λ-CGN) is a mucopolysaccharide extracted from the cell wall of red algae (Chondrus crispus) capable of inducing acute intestinal inflammation, which is translated into the production of acute phase reactants secreted into the blood circulation. However, the associated mechanisms in vertebrates are not well understood. Here, we investigated the crucial factors behind the inflammatory milieu of λ-CGN-mediated inflammation administered at 0, 1.75, and 3.5% (v/w) by i.p. injection into the peritoneal cavity of adult zebrafish (ZF) (Danio rerio). We found that polymorphonuclear leukocytes (neutrophils) and lymphocytes infiltrating the ZF peritoneal cavity had short-term persistence. Nevertheless, they generate a strong pattern of inflammation that affects systemically and is enough to produce edema in the cavity. Consistent with these findings, cell infiltration, which causes notable tissue changes, resulted in the overexpression of several acute inflammatory markers at the protein level. Using reversed-phase high-performance liquid chromatography followed by a hybrid linear ion-trap mass spectrometry shotgun proteomic approach, we identified 2938 plasma proteins among the animals injected with PBS and 3.5% λ-CGN. First, the bioinformatic analysis revealed the composition of the plasma proteome. Interestingly, 72 commonly expressed proteins were recorded among the treated and control groups, but, surprisingly, 2830 novel proteins were differentially expressed exclusively in the λ-CGN-induced group. Furthermore, from the commonly expressed proteins, compared to the control group 62 proteins got a significant (p < 0.05) upregulation in the λ-CGN-treated group, while the remaining ten proteins were downregulated. Next, we obtained the major protein-protein interaction networks between hub protein clusters in the blood plasma of the λ-CGN induced group. Moreover, to understand the molecular underpinnings of these effects based on the unveiled protein sets, we performed a bioinformatic structural similarity analysis and generated overlapping 3D reconstructions between ZF and humans during acute inflammation. Biological pathway analysis pointed to the activation and abundance of diverse classical immune and acute phase reactants, several catalytic enzymes, and varied proteins supporting the immune response. Together, this information can be used for testing and finding novel pharmacological targets to treat human intestinal inflammatory diseases.
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spelling Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterpartsacute-phase proteinsDanio rerio (zebrafish)glycoproteinsimmunitymodel organismoptical coherence tomography (OCT)proteomicsshotgun LC-MS/MSRegulation of inflammation is a critical process for maintaining physiological homeostasis. The λ-carrageenan (λ-CGN) is a mucopolysaccharide extracted from the cell wall of red algae (Chondrus crispus) capable of inducing acute intestinal inflammation, which is translated into the production of acute phase reactants secreted into the blood circulation. However, the associated mechanisms in vertebrates are not well understood. Here, we investigated the crucial factors behind the inflammatory milieu of λ-CGN-mediated inflammation administered at 0, 1.75, and 3.5% (v/w) by i.p. injection into the peritoneal cavity of adult zebrafish (ZF) (Danio rerio). We found that polymorphonuclear leukocytes (neutrophils) and lymphocytes infiltrating the ZF peritoneal cavity had short-term persistence. Nevertheless, they generate a strong pattern of inflammation that affects systemically and is enough to produce edema in the cavity. Consistent with these findings, cell infiltration, which causes notable tissue changes, resulted in the overexpression of several acute inflammatory markers at the protein level. Using reversed-phase high-performance liquid chromatography followed by a hybrid linear ion-trap mass spectrometry shotgun proteomic approach, we identified 2938 plasma proteins among the animals injected with PBS and 3.5% λ-CGN. First, the bioinformatic analysis revealed the composition of the plasma proteome. Interestingly, 72 commonly expressed proteins were recorded among the treated and control groups, but, surprisingly, 2830 novel proteins were differentially expressed exclusively in the λ-CGN-induced group. Furthermore, from the commonly expressed proteins, compared to the control group 62 proteins got a significant (p < 0.05) upregulation in the λ-CGN-treated group, while the remaining ten proteins were downregulated. Next, we obtained the major protein-protein interaction networks between hub protein clusters in the blood plasma of the λ-CGN induced group. Moreover, to understand the molecular underpinnings of these effects based on the unveiled protein sets, we performed a bioinformatic structural similarity analysis and generated overlapping 3D reconstructions between ZF and humans during acute inflammation. Biological pathway analysis pointed to the activation and abundance of diverse classical immune and acute phase reactants, several catalytic enzymes, and varied proteins supporting the immune response. Together, this information can be used for testing and finding novel pharmacological targets to treat human intestinal inflammatory diseases.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Department of Pharmacology University of São PauloIntegrated Laboratory of Translational Bioscience Institute of Biodiversity and Sustainability Federal University of Rio de JaneiroDepartment Immunology University of São PauloLaboratório de Controle Genético e Sanitário Faculdade de Medicina Universidade de São PauloReproductive and Molecular Biology Group Department of Morphology Institute of Biosciences São Paulo State UniversityTransplantation Immunobiology Lab Department of Immunology Institute of Biomedical Sciences Universidade de São PauloDepartment of Pharmacology Instituto de CiênciasBiomédicas Universidade Federal de Minas Gerais (ICB-UFMG)Department of Pharmacology and Toxicology Oswaldo Cruz Foundation (FIOCRUZ)Laboratory of Zebrafish from Federal de Minas Gerais (UFMG)Department of Preventive Veterinary Medicine São Paulo State UniversityDepartment of Morphology Instituto de CiênciasBiomédicas-Universidade Federal de Minas Gerais (ICB-UFMG)Veterinary College Federal University of RondoniaDepartment of Aquaculture Faculty of Biosciences and Aquaculture Nord UniversityDepartment of Lasers in Dentistry São Leopoldo MandicPeptide Biochemistry Laboratory Universidade Federal de São Paulo (UNIFESP)Center for Lasers and Applications Instituto de PesquisasEnergéticas e Nucleares (IPEN-CNEN)University BrazilDevelopment and Innovation Laboratory Center of Innovation and Development Butantan InstitutePaleogenomics Laboratory European University at Saint PetersburgImmunoregulation Unit Butantan InstituteDepartment of Genetics and Evolution Federal University of São CarlosPostgraduate Program in Pharmacology Federal University of Santa MariaUniversity of Passo FundoBiological Research Laboratory Goiano Federal InstituteCenter of Research in Inflammatory Diseases Ribeirão Preto Medical School University of São PauloDepartment of Pharmacology Ribeirão Preto Medical School University of São PauloDepartment of Genomics Faculty of Biosciences and Aquaculture Nord UniversityReproductive and Molecular Biology Group Department of Morphology Institute of Biosciences São Paulo State UniversityDepartment of Preventive Veterinary Medicine São Paulo State UniversityFAPESP: 2013/25971-9FAPESP: 2019/19939-1CNPq: 301473/2016-1Universidade de São Paulo (USP)Federal University of Rio de JaneiroUniversidade Estadual Paulista (UNESP)Universidade Federal de Minas Gerais (UFMG)Oswaldo Cruz Foundation (FIOCRUZ)Federal University of RondoniaNord UniversitySão Leopoldo MandicUniversidade Federal de São Paulo (UNIFESP)Instituto de PesquisasEnergéticas e Nucleares (IPEN-CNEN)University BrazilButantan InstituteEuropean University at Saint PetersburgUniversidade Federal de São Carlos (UFSCar)Federal University of Santa MariaUniversity of Passo FundoGoiano Federal InstituteCharlie-Silva, IvesFeitosa, Natália M.Pontes, Leticia G.Fernandes, Bianca H.Nóbrega, Rafael H. [UNESP]Gomes, Juliana M. M.Prata, Mariana N. L.Ferraris, Fausto K.Melo, Daniela C.Conde, Gabriel [UNESP]Rodrigues, Letícia F. [UNESP]Aracati, Mayumi F. [UNESP]Corrêa-Junior, José D.Manrique, Wilson G.Superio, JoshuaGarcez, Aguinaldo S.Conceição, KatiaYoshimura, Tania M.Núñez, Silvia C.Eto, Silas F.Fernandes, Dayanne C. [UNESP]Freitas, Anderson Z.Ribeiro, Martha S.Nedoluzhko, ArtemLopes-Ferreira, MônicaBorra, Ricardo C.Barcellos, Leonardo J. G.Perez, Andrea C.Malafaia, GuilhemeCunha, Thiago M.Belo, Marco A. A. [UNESP]Galindo-Villegas, Jorge2023-07-29T13:59:22Z2023-07-29T13:59:22Z2022-09-29info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3389/fimmu.2022.1019201Frontiers in Immunology, v. 13.1664-3224http://hdl.handle.net/11449/24898910.3389/fimmu.2022.10192012-s2.0-85139887024Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers in Immunologyinfo:eu-repo/semantics/openAccess2023-07-29T13:59:23Zoai:repositorio.unesp.br:11449/248989Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-07-29T13:59:23Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
title Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
spellingShingle Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
Charlie-Silva, Ives
acute-phase proteins
Danio rerio (zebrafish)
glycoproteins
immunity
model organism
optical coherence tomography (OCT)
proteomics
shotgun LC-MS/MS
title_short Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
title_full Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
title_fullStr Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
title_full_unstemmed Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
title_sort Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
author Charlie-Silva, Ives
author_facet Charlie-Silva, Ives
Feitosa, Natália M.
Pontes, Leticia G.
Fernandes, Bianca H.
Nóbrega, Rafael H. [UNESP]
Gomes, Juliana M. M.
Prata, Mariana N. L.
Ferraris, Fausto K.
Melo, Daniela C.
Conde, Gabriel [UNESP]
Rodrigues, Letícia F. [UNESP]
Aracati, Mayumi F. [UNESP]
Corrêa-Junior, José D.
Manrique, Wilson G.
Superio, Joshua
Garcez, Aguinaldo S.
Conceição, Katia
Yoshimura, Tania M.
Núñez, Silvia C.
Eto, Silas F.
Fernandes, Dayanne C. [UNESP]
Freitas, Anderson Z.
Ribeiro, Martha S.
Nedoluzhko, Artem
Lopes-Ferreira, Mônica
Borra, Ricardo C.
Barcellos, Leonardo J. G.
Perez, Andrea C.
Malafaia, Guilheme
Cunha, Thiago M.
Belo, Marco A. A. [UNESP]
Galindo-Villegas, Jorge
author_role author
author2 Feitosa, Natália M.
Pontes, Leticia G.
Fernandes, Bianca H.
Nóbrega, Rafael H. [UNESP]
Gomes, Juliana M. M.
Prata, Mariana N. L.
Ferraris, Fausto K.
Melo, Daniela C.
Conde, Gabriel [UNESP]
Rodrigues, Letícia F. [UNESP]
Aracati, Mayumi F. [UNESP]
Corrêa-Junior, José D.
Manrique, Wilson G.
Superio, Joshua
Garcez, Aguinaldo S.
Conceição, Katia
Yoshimura, Tania M.
Núñez, Silvia C.
Eto, Silas F.
Fernandes, Dayanne C. [UNESP]
Freitas, Anderson Z.
Ribeiro, Martha S.
Nedoluzhko, Artem
Lopes-Ferreira, Mônica
Borra, Ricardo C.
Barcellos, Leonardo J. G.
Perez, Andrea C.
Malafaia, Guilheme
Cunha, Thiago M.
Belo, Marco A. A. [UNESP]
Galindo-Villegas, Jorge
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Federal University of Rio de Janeiro
Universidade Estadual Paulista (UNESP)
Universidade Federal de Minas Gerais (UFMG)
Oswaldo Cruz Foundation (FIOCRUZ)
Federal University of Rondonia
Nord University
São Leopoldo Mandic
Universidade Federal de São Paulo (UNIFESP)
Instituto de PesquisasEnergéticas e Nucleares (IPEN-CNEN)
University Brazil
Butantan Institute
European University at Saint Petersburg
Universidade Federal de São Carlos (UFSCar)
Federal University of Santa Maria
University of Passo Fundo
Goiano Federal Institute
dc.contributor.author.fl_str_mv Charlie-Silva, Ives
Feitosa, Natália M.
Pontes, Leticia G.
Fernandes, Bianca H.
Nóbrega, Rafael H. [UNESP]
Gomes, Juliana M. M.
Prata, Mariana N. L.
Ferraris, Fausto K.
Melo, Daniela C.
Conde, Gabriel [UNESP]
Rodrigues, Letícia F. [UNESP]
Aracati, Mayumi F. [UNESP]
Corrêa-Junior, José D.
Manrique, Wilson G.
Superio, Joshua
Garcez, Aguinaldo S.
Conceição, Katia
Yoshimura, Tania M.
Núñez, Silvia C.
Eto, Silas F.
Fernandes, Dayanne C. [UNESP]
Freitas, Anderson Z.
Ribeiro, Martha S.
Nedoluzhko, Artem
Lopes-Ferreira, Mônica
Borra, Ricardo C.
Barcellos, Leonardo J. G.
Perez, Andrea C.
Malafaia, Guilheme
Cunha, Thiago M.
Belo, Marco A. A. [UNESP]
Galindo-Villegas, Jorge
dc.subject.por.fl_str_mv acute-phase proteins
Danio rerio (zebrafish)
glycoproteins
immunity
model organism
optical coherence tomography (OCT)
proteomics
shotgun LC-MS/MS
topic acute-phase proteins
Danio rerio (zebrafish)
glycoproteins
immunity
model organism
optical coherence tomography (OCT)
proteomics
shotgun LC-MS/MS
description Regulation of inflammation is a critical process for maintaining physiological homeostasis. The λ-carrageenan (λ-CGN) is a mucopolysaccharide extracted from the cell wall of red algae (Chondrus crispus) capable of inducing acute intestinal inflammation, which is translated into the production of acute phase reactants secreted into the blood circulation. However, the associated mechanisms in vertebrates are not well understood. Here, we investigated the crucial factors behind the inflammatory milieu of λ-CGN-mediated inflammation administered at 0, 1.75, and 3.5% (v/w) by i.p. injection into the peritoneal cavity of adult zebrafish (ZF) (Danio rerio). We found that polymorphonuclear leukocytes (neutrophils) and lymphocytes infiltrating the ZF peritoneal cavity had short-term persistence. Nevertheless, they generate a strong pattern of inflammation that affects systemically and is enough to produce edema in the cavity. Consistent with these findings, cell infiltration, which causes notable tissue changes, resulted in the overexpression of several acute inflammatory markers at the protein level. Using reversed-phase high-performance liquid chromatography followed by a hybrid linear ion-trap mass spectrometry shotgun proteomic approach, we identified 2938 plasma proteins among the animals injected with PBS and 3.5% λ-CGN. First, the bioinformatic analysis revealed the composition of the plasma proteome. Interestingly, 72 commonly expressed proteins were recorded among the treated and control groups, but, surprisingly, 2830 novel proteins were differentially expressed exclusively in the λ-CGN-induced group. Furthermore, from the commonly expressed proteins, compared to the control group 62 proteins got a significant (p < 0.05) upregulation in the λ-CGN-treated group, while the remaining ten proteins were downregulated. Next, we obtained the major protein-protein interaction networks between hub protein clusters in the blood plasma of the λ-CGN induced group. Moreover, to understand the molecular underpinnings of these effects based on the unveiled protein sets, we performed a bioinformatic structural similarity analysis and generated overlapping 3D reconstructions between ZF and humans during acute inflammation. Biological pathway analysis pointed to the activation and abundance of diverse classical immune and acute phase reactants, several catalytic enzymes, and varied proteins supporting the immune response. Together, this information can be used for testing and finding novel pharmacological targets to treat human intestinal inflammatory diseases.
publishDate 2022
dc.date.none.fl_str_mv 2022-09-29
2023-07-29T13:59:22Z
2023-07-29T13:59:22Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fimmu.2022.1019201
Frontiers in Immunology, v. 13.
1664-3224
http://hdl.handle.net/11449/248989
10.3389/fimmu.2022.1019201
2-s2.0-85139887024
url http://dx.doi.org/10.3389/fimmu.2022.1019201
http://hdl.handle.net/11449/248989
identifier_str_mv Frontiers in Immunology, v. 13.
1664-3224
10.3389/fimmu.2022.1019201
2-s2.0-85139887024
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers in Immunology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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