Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1186/1471-2156-15-21 http://hdl.handle.net/11449/111590 |
Resumo: | Background: Feed intake plays an important economic role in beef cattle, and is related with feed efficiency, weight gain and carcass traits. However, the phenotypes collected for dry matter intake and feed efficiency are scarce when compared with other measures such as weight gain and carcass traits. The use of genomic information can improve the power of inference of studies on these measures, identifying genomic regions that affect these phenotypes. This work performed the genome-wide association study (GWAS) for dry matter intake (DMI) and residual feed intake (RFI) of 720 Nellore cattle (Bos taurus indicus).Results: In general, no genomic region extremely associated with both phenotypic traits was observed, as expected for the variables that have their regulation controlled by many genes. Three SNPs surpassed the threshold for the Bonferroni multiple test for DMI and two SNPs for RFI. These markers are located on chromosomes 4, 8, 14 and 21 in regions near genes regulating appetite and ion transport and close to important QTL as previously reported to RFI and DMI, thus corroborating the literature that points these two processes as important in the physiological regulation of intake and feed efficiency.Conclusions: This study showed the first GWAS of DMI to identify genomic regions associated with feed intake and efficiency in Nellore cattle. Some genes and QTLs previously described for DMI and RFI, in other subspecies (Bos taurus taurus), that influences these phenotypes are confirmed in this study. |
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Genome-wide association analysis of feed intake and residual feed intake in Nellore cattleBackground: Feed intake plays an important economic role in beef cattle, and is related with feed efficiency, weight gain and carcass traits. However, the phenotypes collected for dry matter intake and feed efficiency are scarce when compared with other measures such as weight gain and carcass traits. The use of genomic information can improve the power of inference of studies on these measures, identifying genomic regions that affect these phenotypes. This work performed the genome-wide association study (GWAS) for dry matter intake (DMI) and residual feed intake (RFI) of 720 Nellore cattle (Bos taurus indicus).Results: In general, no genomic region extremely associated with both phenotypic traits was observed, as expected for the variables that have their regulation controlled by many genes. Three SNPs surpassed the threshold for the Bonferroni multiple test for DMI and two SNPs for RFI. These markers are located on chromosomes 4, 8, 14 and 21 in regions near genes regulating appetite and ion transport and close to important QTL as previously reported to RFI and DMI, thus corroborating the literature that points these two processes as important in the physiological regulation of intake and feed efficiency.Conclusions: This study showed the first GWAS of DMI to identify genomic regions associated with feed intake and efficiency in Nellore cattle. Some genes and QTLs previously described for DMI and RFI, in other subspecies (Bos taurus taurus), that influences these phenotypes are confirmed in this study.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Fac Zootecnia & Engn Alimentos USP, BR-13635900 Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, BR-14884900 Sao Paulo, BrazilEmpresa Brasileira Pesquisa Agropecuaria, CNPGC EMBRAPA, BR-79002970 Campo Grande, Matogrosso Do S, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, BR-16050680 Sao Paulo, BrazilUniv Sao Paulo, Escola Super Agr Luiz de Queiroz, BR-13418900 Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, BR-14884900 Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, BR-16050680 Sao Paulo, BrazilFAPESP: 11/16643-2FAPESP: 12/02039-9FAPESP: 12/03551-5Biomed Central Ltd.Universidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Santana, Miguel H. A.Utsunomiya, Yuri T. [UNESP]Neves, Haroldo H. R. [UNESP]Gomes, Rodrigo C.Garcia, José Fernando [UNESP]Fukumasu, HeidgeSilva, Saulo L.Oliveira Junior, Gerson A.Alexandre, Pamela A.Leme, Paulo R.Brassaloti, Ricardo A.Coutinho, Luiz L.Lopes, Thiago G. [UNESP]Meirelles, Flavio V.Eler, Joanir P.Ferraz, Jose B. S.2014-12-03T13:08:47Z2014-12-03T13:08:47Z2014-02-11info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article8application/pdfhttp://dx.doi.org/10.1186/1471-2156-15-21Bmc Genetics. London: Biomed Central Ltd, v. 15, 8 p., 2014.1471-2156http://hdl.handle.net/11449/11159010.1186/1471-2156-15-21WOS:000334615600001WOS000334615600001.pdf9991374083045897Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBMC Genetics2.4691,160info:eu-repo/semantics/openAccess2024-09-04T19:16:20Zoai:repositorio.unesp.br:11449/111590Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:16:20Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle |
title |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle |
spellingShingle |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle Santana, Miguel H. A. |
title_short |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle |
title_full |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle |
title_fullStr |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle |
title_full_unstemmed |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle |
title_sort |
Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle |
author |
Santana, Miguel H. A. |
author_facet |
Santana, Miguel H. A. Utsunomiya, Yuri T. [UNESP] Neves, Haroldo H. R. [UNESP] Gomes, Rodrigo C. Garcia, José Fernando [UNESP] Fukumasu, Heidge Silva, Saulo L. Oliveira Junior, Gerson A. Alexandre, Pamela A. Leme, Paulo R. Brassaloti, Ricardo A. Coutinho, Luiz L. Lopes, Thiago G. [UNESP] Meirelles, Flavio V. Eler, Joanir P. Ferraz, Jose B. S. |
author_role |
author |
author2 |
Utsunomiya, Yuri T. [UNESP] Neves, Haroldo H. R. [UNESP] Gomes, Rodrigo C. Garcia, José Fernando [UNESP] Fukumasu, Heidge Silva, Saulo L. Oliveira Junior, Gerson A. Alexandre, Pamela A. Leme, Paulo R. Brassaloti, Ricardo A. Coutinho, Luiz L. Lopes, Thiago G. [UNESP] Meirelles, Flavio V. Eler, Joanir P. Ferraz, Jose B. S. |
author2_role |
author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Universidade Estadual Paulista (Unesp) Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) |
dc.contributor.author.fl_str_mv |
Santana, Miguel H. A. Utsunomiya, Yuri T. [UNESP] Neves, Haroldo H. R. [UNESP] Gomes, Rodrigo C. Garcia, José Fernando [UNESP] Fukumasu, Heidge Silva, Saulo L. Oliveira Junior, Gerson A. Alexandre, Pamela A. Leme, Paulo R. Brassaloti, Ricardo A. Coutinho, Luiz L. Lopes, Thiago G. [UNESP] Meirelles, Flavio V. Eler, Joanir P. Ferraz, Jose B. S. |
description |
Background: Feed intake plays an important economic role in beef cattle, and is related with feed efficiency, weight gain and carcass traits. However, the phenotypes collected for dry matter intake and feed efficiency are scarce when compared with other measures such as weight gain and carcass traits. The use of genomic information can improve the power of inference of studies on these measures, identifying genomic regions that affect these phenotypes. This work performed the genome-wide association study (GWAS) for dry matter intake (DMI) and residual feed intake (RFI) of 720 Nellore cattle (Bos taurus indicus).Results: In general, no genomic region extremely associated with both phenotypic traits was observed, as expected for the variables that have their regulation controlled by many genes. Three SNPs surpassed the threshold for the Bonferroni multiple test for DMI and two SNPs for RFI. These markers are located on chromosomes 4, 8, 14 and 21 in regions near genes regulating appetite and ion transport and close to important QTL as previously reported to RFI and DMI, thus corroborating the literature that points these two processes as important in the physiological regulation of intake and feed efficiency.Conclusions: This study showed the first GWAS of DMI to identify genomic regions associated with feed intake and efficiency in Nellore cattle. Some genes and QTLs previously described for DMI and RFI, in other subspecies (Bos taurus taurus), that influences these phenotypes are confirmed in this study. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014-12-03T13:08:47Z 2014-12-03T13:08:47Z 2014-02-11 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1186/1471-2156-15-21 Bmc Genetics. London: Biomed Central Ltd, v. 15, 8 p., 2014. 1471-2156 http://hdl.handle.net/11449/111590 10.1186/1471-2156-15-21 WOS:000334615600001 WOS000334615600001.pdf 9991374083045897 |
url |
http://dx.doi.org/10.1186/1471-2156-15-21 http://hdl.handle.net/11449/111590 |
identifier_str_mv |
Bmc Genetics. London: Biomed Central Ltd, v. 15, 8 p., 2014. 1471-2156 10.1186/1471-2156-15-21 WOS:000334615600001 WOS000334615600001.pdf 9991374083045897 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
BMC Genetics 2.469 1,160 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
8 application/pdf |
dc.publisher.none.fl_str_mv |
Biomed Central Ltd. |
publisher.none.fl_str_mv |
Biomed Central Ltd. |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1810021427236044800 |