Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle

Detalhes bibliográficos
Autor(a) principal: Santana, Miguel H. A.
Data de Publicação: 2014
Outros Autores: Utsunomiya, Yuri T. [UNESP], Neves, Haroldo H. R. [UNESP], Gomes, Rodrigo C., Garcia, José Fernando [UNESP], Fukumasu, Heidge, Silva, Saulo L., Oliveira Junior, Gerson A., Alexandre, Pamela A., Leme, Paulo R., Brassaloti, Ricardo A., Coutinho, Luiz L., Lopes, Thiago G. [UNESP], Meirelles, Flavio V., Eler, Joanir P., Ferraz, Jose B. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1186/1471-2156-15-21
http://hdl.handle.net/11449/111590
Resumo: Background: Feed intake plays an important economic role in beef cattle, and is related with feed efficiency, weight gain and carcass traits. However, the phenotypes collected for dry matter intake and feed efficiency are scarce when compared with other measures such as weight gain and carcass traits. The use of genomic information can improve the power of inference of studies on these measures, identifying genomic regions that affect these phenotypes. This work performed the genome-wide association study (GWAS) for dry matter intake (DMI) and residual feed intake (RFI) of 720 Nellore cattle (Bos taurus indicus).Results: In general, no genomic region extremely associated with both phenotypic traits was observed, as expected for the variables that have their regulation controlled by many genes. Three SNPs surpassed the threshold for the Bonferroni multiple test for DMI and two SNPs for RFI. These markers are located on chromosomes 4, 8, 14 and 21 in regions near genes regulating appetite and ion transport and close to important QTL as previously reported to RFI and DMI, thus corroborating the literature that points these two processes as important in the physiological regulation of intake and feed efficiency.Conclusions: This study showed the first GWAS of DMI to identify genomic regions associated with feed intake and efficiency in Nellore cattle. Some genes and QTLs previously described for DMI and RFI, in other subspecies (Bos taurus taurus), that influences these phenotypes are confirmed in this study.
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spelling Genome-wide association analysis of feed intake and residual feed intake in Nellore cattleBackground: Feed intake plays an important economic role in beef cattle, and is related with feed efficiency, weight gain and carcass traits. However, the phenotypes collected for dry matter intake and feed efficiency are scarce when compared with other measures such as weight gain and carcass traits. The use of genomic information can improve the power of inference of studies on these measures, identifying genomic regions that affect these phenotypes. This work performed the genome-wide association study (GWAS) for dry matter intake (DMI) and residual feed intake (RFI) of 720 Nellore cattle (Bos taurus indicus).Results: In general, no genomic region extremely associated with both phenotypic traits was observed, as expected for the variables that have their regulation controlled by many genes. Three SNPs surpassed the threshold for the Bonferroni multiple test for DMI and two SNPs for RFI. These markers are located on chromosomes 4, 8, 14 and 21 in regions near genes regulating appetite and ion transport and close to important QTL as previously reported to RFI and DMI, thus corroborating the literature that points these two processes as important in the physiological regulation of intake and feed efficiency.Conclusions: This study showed the first GWAS of DMI to identify genomic regions associated with feed intake and efficiency in Nellore cattle. Some genes and QTLs previously described for DMI and RFI, in other subspecies (Bos taurus taurus), that influences these phenotypes are confirmed in this study.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Fac Zootecnia & Engn Alimentos USP, BR-13635900 Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, BR-14884900 Sao Paulo, BrazilEmpresa Brasileira Pesquisa Agropecuaria, CNPGC EMBRAPA, BR-79002970 Campo Grande, Matogrosso Do S, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, BR-16050680 Sao Paulo, BrazilUniv Sao Paulo, Escola Super Agr Luiz de Queiroz, BR-13418900 Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, BR-14884900 Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, BR-16050680 Sao Paulo, BrazilFAPESP: 11/16643-2FAPESP: 12/02039-9FAPESP: 12/03551-5Biomed Central Ltd.Universidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Santana, Miguel H. A.Utsunomiya, Yuri T. [UNESP]Neves, Haroldo H. R. [UNESP]Gomes, Rodrigo C.Garcia, José Fernando [UNESP]Fukumasu, HeidgeSilva, Saulo L.Oliveira Junior, Gerson A.Alexandre, Pamela A.Leme, Paulo R.Brassaloti, Ricardo A.Coutinho, Luiz L.Lopes, Thiago G. [UNESP]Meirelles, Flavio V.Eler, Joanir P.Ferraz, Jose B. S.2014-12-03T13:08:47Z2014-12-03T13:08:47Z2014-02-11info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article8application/pdfhttp://dx.doi.org/10.1186/1471-2156-15-21Bmc Genetics. London: Biomed Central Ltd, v. 15, 8 p., 2014.1471-2156http://hdl.handle.net/11449/11159010.1186/1471-2156-15-21WOS:000334615600001WOS000334615600001.pdf9991374083045897Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBMC Genetics2.4691,160info:eu-repo/semantics/openAccess2024-09-04T19:16:20Zoai:repositorio.unesp.br:11449/111590Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:16:20Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
title Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
spellingShingle Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
Santana, Miguel H. A.
title_short Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
title_full Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
title_fullStr Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
title_full_unstemmed Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
title_sort Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle
author Santana, Miguel H. A.
author_facet Santana, Miguel H. A.
Utsunomiya, Yuri T. [UNESP]
Neves, Haroldo H. R. [UNESP]
Gomes, Rodrigo C.
Garcia, José Fernando [UNESP]
Fukumasu, Heidge
Silva, Saulo L.
Oliveira Junior, Gerson A.
Alexandre, Pamela A.
Leme, Paulo R.
Brassaloti, Ricardo A.
Coutinho, Luiz L.
Lopes, Thiago G. [UNESP]
Meirelles, Flavio V.
Eler, Joanir P.
Ferraz, Jose B. S.
author_role author
author2 Utsunomiya, Yuri T. [UNESP]
Neves, Haroldo H. R. [UNESP]
Gomes, Rodrigo C.
Garcia, José Fernando [UNESP]
Fukumasu, Heidge
Silva, Saulo L.
Oliveira Junior, Gerson A.
Alexandre, Pamela A.
Leme, Paulo R.
Brassaloti, Ricardo A.
Coutinho, Luiz L.
Lopes, Thiago G. [UNESP]
Meirelles, Flavio V.
Eler, Joanir P.
Ferraz, Jose B. S.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Universidade Estadual Paulista (Unesp)
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.contributor.author.fl_str_mv Santana, Miguel H. A.
Utsunomiya, Yuri T. [UNESP]
Neves, Haroldo H. R. [UNESP]
Gomes, Rodrigo C.
Garcia, José Fernando [UNESP]
Fukumasu, Heidge
Silva, Saulo L.
Oliveira Junior, Gerson A.
Alexandre, Pamela A.
Leme, Paulo R.
Brassaloti, Ricardo A.
Coutinho, Luiz L.
Lopes, Thiago G. [UNESP]
Meirelles, Flavio V.
Eler, Joanir P.
Ferraz, Jose B. S.
description Background: Feed intake plays an important economic role in beef cattle, and is related with feed efficiency, weight gain and carcass traits. However, the phenotypes collected for dry matter intake and feed efficiency are scarce when compared with other measures such as weight gain and carcass traits. The use of genomic information can improve the power of inference of studies on these measures, identifying genomic regions that affect these phenotypes. This work performed the genome-wide association study (GWAS) for dry matter intake (DMI) and residual feed intake (RFI) of 720 Nellore cattle (Bos taurus indicus).Results: In general, no genomic region extremely associated with both phenotypic traits was observed, as expected for the variables that have their regulation controlled by many genes. Three SNPs surpassed the threshold for the Bonferroni multiple test for DMI and two SNPs for RFI. These markers are located on chromosomes 4, 8, 14 and 21 in regions near genes regulating appetite and ion transport and close to important QTL as previously reported to RFI and DMI, thus corroborating the literature that points these two processes as important in the physiological regulation of intake and feed efficiency.Conclusions: This study showed the first GWAS of DMI to identify genomic regions associated with feed intake and efficiency in Nellore cattle. Some genes and QTLs previously described for DMI and RFI, in other subspecies (Bos taurus taurus), that influences these phenotypes are confirmed in this study.
publishDate 2014
dc.date.none.fl_str_mv 2014-12-03T13:08:47Z
2014-12-03T13:08:47Z
2014-02-11
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1186/1471-2156-15-21
Bmc Genetics. London: Biomed Central Ltd, v. 15, 8 p., 2014.
1471-2156
http://hdl.handle.net/11449/111590
10.1186/1471-2156-15-21
WOS:000334615600001
WOS000334615600001.pdf
9991374083045897
url http://dx.doi.org/10.1186/1471-2156-15-21
http://hdl.handle.net/11449/111590
identifier_str_mv Bmc Genetics. London: Biomed Central Ltd, v. 15, 8 p., 2014.
1471-2156
10.1186/1471-2156-15-21
WOS:000334615600001
WOS000334615600001.pdf
9991374083045897
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv BMC Genetics
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1,160
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eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 8
application/pdf
dc.publisher.none.fl_str_mv Biomed Central Ltd.
publisher.none.fl_str_mv Biomed Central Ltd.
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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