Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)

Detalhes bibliográficos
Autor(a) principal: Utsunomia, Ricardo [UNESP]
Data de Publicação: 2018
Outros Autores: Melo, Silvana [UNESP], Scacchetti, Priscilla Cardim [UNESP], Oliveira, Claudio [UNESP], Machado, Milla de Andrade, Pieczarka, Julio Cesar, Nagamachi, Cleusa Yoshiko, Foresti, Fausto [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1089/zeb.2018.1570
http://hdl.handle.net/11449/164343
Resumo: Microsatellites show great abundance in eukaryotic genomes, although distinct chromosomal distribution patterns might be observed, from small dispersed signals to strong clustered motifs. In Neotropical fishes, the chromosome mapping of distinct microsatellites was employed several times to uncover the origin and evolution of sex and supernumerary chromosomes, whereas a detailed comparative analysis considering different motifs at the chromosomal level is scarce. Here, we report the chromosomal location of several simple sequence repeats (SSRs) in distinct electric knife fishes showing variable diploid chromosome numbers to unveil the structural organization of several microsatellite motifs in distinct Gymnotus species. Our results showed that some SSRs are scattered throughout the genomes, whereas others are particularly clustered displaying intense genomic compartmentalization. Interestingly, the motifs CA, GA, and GAG exhibited a band-like pattern of hybridization, useful for the identification of homologous chromosomes. Finally, the colocalization of SSRs with multigene families is probably related to the association of microsatellites with gene spacers in this case.
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spelling Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)cytogeneticsneotropical fishrepetitive DNASSRgenome compartmentalizationMicrosatellites show great abundance in eukaryotic genomes, although distinct chromosomal distribution patterns might be observed, from small dispersed signals to strong clustered motifs. In Neotropical fishes, the chromosome mapping of distinct microsatellites was employed several times to uncover the origin and evolution of sex and supernumerary chromosomes, whereas a detailed comparative analysis considering different motifs at the chromosomal level is scarce. Here, we report the chromosomal location of several simple sequence repeats (SSRs) in distinct electric knife fishes showing variable diploid chromosome numbers to unveil the structural organization of several microsatellite motifs in distinct Gymnotus species. Our results showed that some SSRs are scattered throughout the genomes, whereas others are particularly clustered displaying intense genomic compartmentalization. Interestingly, the motifs CA, GA, and GAG exhibited a band-like pattern of hybridization, useful for the identification of homologous chromosomes. Finally, the colocalization of SSRs with multigene families is probably related to the association of microsatellites with gene spacers in this case.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Sao Paulo State Univ, Inst Biosci Botucatu, Dept Morphol, Lab Biol & Genet Peixes, BR-04026002 Botucatu, SP, BrazilUniv Fed Para, Inst Ciencias Biol, Ctr Estudos Avancados Biodiversidade, Lab Citogenet, Belem, PA, BrazilSao Paulo State Univ, Inst Biosci Botucatu, Dept Morphol, Lab Biol & Genet Peixes, BR-04026002 Botucatu, SP, BrazilMary Ann Liebert, IncUniversidade Estadual Paulista (Unesp)Univ Fed ParaUtsunomia, Ricardo [UNESP]Melo, Silvana [UNESP]Scacchetti, Priscilla Cardim [UNESP]Oliveira, Claudio [UNESP]Machado, Milla de AndradePieczarka, Julio CesarNagamachi, Cleusa YoshikoForesti, Fausto [UNESP]2018-11-26T17:52:12Z2018-11-26T17:52:12Z2018-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article398-403http://dx.doi.org/10.1089/zeb.2018.1570Zebrafish. New Rochelle: Mary Ann Liebert, Inc, v. 15, n. 4, p. 398-403, 2018.1545-8547http://hdl.handle.net/11449/16434310.1089/zeb.2018.1570WOS:000436020400001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengZebrafish0,795info:eu-repo/semantics/openAccess2021-10-23T17:45:36Zoai:repositorio.unesp.br:11449/164343Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T13:54:49.263123Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
title Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
spellingShingle Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
Utsunomia, Ricardo [UNESP]
cytogenetics
neotropical fish
repetitive DNA
SSR
genome compartmentalization
title_short Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
title_full Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
title_fullStr Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
title_full_unstemmed Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
title_sort Particular Chromosomal Distribution of Microsatellites in Five Species of the Genus Gymnotus (Teleostei, Gymnotiformes)
author Utsunomia, Ricardo [UNESP]
author_facet Utsunomia, Ricardo [UNESP]
Melo, Silvana [UNESP]
Scacchetti, Priscilla Cardim [UNESP]
Oliveira, Claudio [UNESP]
Machado, Milla de Andrade
Pieczarka, Julio Cesar
Nagamachi, Cleusa Yoshiko
Foresti, Fausto [UNESP]
author_role author
author2 Melo, Silvana [UNESP]
Scacchetti, Priscilla Cardim [UNESP]
Oliveira, Claudio [UNESP]
Machado, Milla de Andrade
Pieczarka, Julio Cesar
Nagamachi, Cleusa Yoshiko
Foresti, Fausto [UNESP]
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Univ Fed Para
dc.contributor.author.fl_str_mv Utsunomia, Ricardo [UNESP]
Melo, Silvana [UNESP]
Scacchetti, Priscilla Cardim [UNESP]
Oliveira, Claudio [UNESP]
Machado, Milla de Andrade
Pieczarka, Julio Cesar
Nagamachi, Cleusa Yoshiko
Foresti, Fausto [UNESP]
dc.subject.por.fl_str_mv cytogenetics
neotropical fish
repetitive DNA
SSR
genome compartmentalization
topic cytogenetics
neotropical fish
repetitive DNA
SSR
genome compartmentalization
description Microsatellites show great abundance in eukaryotic genomes, although distinct chromosomal distribution patterns might be observed, from small dispersed signals to strong clustered motifs. In Neotropical fishes, the chromosome mapping of distinct microsatellites was employed several times to uncover the origin and evolution of sex and supernumerary chromosomes, whereas a detailed comparative analysis considering different motifs at the chromosomal level is scarce. Here, we report the chromosomal location of several simple sequence repeats (SSRs) in distinct electric knife fishes showing variable diploid chromosome numbers to unveil the structural organization of several microsatellite motifs in distinct Gymnotus species. Our results showed that some SSRs are scattered throughout the genomes, whereas others are particularly clustered displaying intense genomic compartmentalization. Interestingly, the motifs CA, GA, and GAG exhibited a band-like pattern of hybridization, useful for the identification of homologous chromosomes. Finally, the colocalization of SSRs with multigene families is probably related to the association of microsatellites with gene spacers in this case.
publishDate 2018
dc.date.none.fl_str_mv 2018-11-26T17:52:12Z
2018-11-26T17:52:12Z
2018-08-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1089/zeb.2018.1570
Zebrafish. New Rochelle: Mary Ann Liebert, Inc, v. 15, n. 4, p. 398-403, 2018.
1545-8547
http://hdl.handle.net/11449/164343
10.1089/zeb.2018.1570
WOS:000436020400001
url http://dx.doi.org/10.1089/zeb.2018.1570
http://hdl.handle.net/11449/164343
identifier_str_mv Zebrafish. New Rochelle: Mary Ann Liebert, Inc, v. 15, n. 4, p. 398-403, 2018.
1545-8547
10.1089/zeb.2018.1570
WOS:000436020400001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Zebrafish
0,795
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 398-403
dc.publisher.none.fl_str_mv Mary Ann Liebert, Inc
publisher.none.fl_str_mv Mary Ann Liebert, Inc
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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