Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri

Detalhes bibliográficos
Autor(a) principal: Bueno, Danilo [UNESP]
Data de Publicação: 2021
Outros Autores: Pedrolli, Danielle B. [UNESP], Martins, Paula M. M., Bocchini, Daniela A. [UNESP], Moraes, Karen C. M. [UNESP], Facincani, Agda P. [UNESP], Ferro, Jesus A. [UNESP], Varani, Alessandro M. [UNESP], Pena, Michelle M. [UNESP], Ferreira, Henrique [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/microorganisms9020329
http://hdl.handle.net/11449/207245
Resumo: Xanthomonas citri subsp. citri (X. citri) is the causal agent of Asiatic Citrus Canker (ACC), a disease that affects citrus. ACC has no cure, and growers must rely on special agricultural practices to prevent bacterial spreading. Understanding X. citri basic biology is essential to foresee potential genetic targets to control ACC. Traditionally, microbial genetics use gene deletion/disruption to investigate gene function. However, essential genes are difficult to study this way. Techniques based on small-RNAs and antisense-RNAs are powerful for gene characterization, but not yet fully explored in prokaryotes. One alternative is riboswitches, which derive from bacteria, and can control transcription/translation. Riboswitches are non-coding RNAs able to modulate gene expression in the presence of specific ligands. Here we demonstrate that the riboswitch theo/metE decreases parB expression in X. citri in a platform responsive to theophylline. By monitoring cell respiration, we showed that higher concentrations of the ligand interfered with bacterial viability. Therefore, we determined the safe dose of theophylline to be used with X. citri. Finally, in downstream investigations of parB transcription modulation, we show evidence for the fact that ParB is stable, remains functional throughout the cell cycle, and is inherited by the daughter cells upon cell division.
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spelling Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. CitriChromosome segregationCitrus cankerParBPNPTS138 sequenceRegulation of gene expressionXanthomonas citri subsp. citri (X. citri) is the causal agent of Asiatic Citrus Canker (ACC), a disease that affects citrus. ACC has no cure, and growers must rely on special agricultural practices to prevent bacterial spreading. Understanding X. citri basic biology is essential to foresee potential genetic targets to control ACC. Traditionally, microbial genetics use gene deletion/disruption to investigate gene function. However, essential genes are difficult to study this way. Techniques based on small-RNAs and antisense-RNAs are powerful for gene characterization, but not yet fully explored in prokaryotes. One alternative is riboswitches, which derive from bacteria, and can control transcription/translation. Riboswitches are non-coding RNAs able to modulate gene expression in the presence of specific ligands. Here we demonstrate that the riboswitch theo/metE decreases parB expression in X. citri in a platform responsive to theophylline. By monitoring cell respiration, we showed that higher concentrations of the ligand interfered with bacterial viability. Therefore, we determined the safe dose of theophylline to be used with X. citri. Finally, in downstream investigations of parB transcription modulation, we show evidence for the fact that ParB is stable, remains functional throughout the cell cycle, and is inherited by the daughter cells upon cell division.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Department of General and Applied Biology Biosciences Institute São Paulo State University (UNESP)Department of Biological Sciences School of Pharmaceutical Sciences São Paulo State University (UNESP)Citriculture Center Agronomic Institute of Sao Paulo (IAC)Department of Biochemistry and Chemistry Technology Chemistry Institute São Paulo State University (UNESP)Department of Technology School of Agricultural and Veterinary Sciences São Paulo State University (UNESP)Department of General and Applied Biology Biosciences Institute São Paulo State University (UNESP)Department of Biological Sciences School of Pharmaceutical Sciences São Paulo State University (UNESP)Department of Biochemistry and Chemistry Technology Chemistry Institute São Paulo State University (UNESP)Department of Technology School of Agricultural and Veterinary Sciences São Paulo State University (UNESP)FAPESP: 2014/50880-0FAPESP: 2015/50162-2FAPESP: 2016/18519-0CNPq: 465440/2014-2Universidade Estadual Paulista (Unesp)Agronomic Institute of Sao Paulo (IAC)Bueno, Danilo [UNESP]Pedrolli, Danielle B. [UNESP]Martins, Paula M. M.Bocchini, Daniela A. [UNESP]Moraes, Karen C. M. [UNESP]Facincani, Agda P. [UNESP]Ferro, Jesus A. [UNESP]Varani, Alessandro M. [UNESP]Pena, Michelle M. [UNESP]Ferreira, Henrique [UNESP]2021-06-25T10:51:48Z2021-06-25T10:51:48Z2021-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-15http://dx.doi.org/10.3390/microorganisms9020329Microorganisms, v. 9, n. 2, p. 1-15, 2021.2076-2607http://hdl.handle.net/11449/20724510.3390/microorganisms90203292-s2.0-85100497237Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMicroorganismsinfo:eu-repo/semantics/openAccess2021-10-23T16:37:22Zoai:repositorio.unesp.br:11449/207245Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T16:37:22Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
title Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
spellingShingle Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
Bueno, Danilo [UNESP]
Chromosome segregation
Citrus canker
ParB
PNPTS138 sequence
Regulation of gene expression
title_short Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
title_full Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
title_fullStr Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
title_full_unstemmed Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
title_sort Riboswitch theo/mete as a transcription regulation tool for xanthomonas citri subsp. Citri
author Bueno, Danilo [UNESP]
author_facet Bueno, Danilo [UNESP]
Pedrolli, Danielle B. [UNESP]
Martins, Paula M. M.
Bocchini, Daniela A. [UNESP]
Moraes, Karen C. M. [UNESP]
Facincani, Agda P. [UNESP]
Ferro, Jesus A. [UNESP]
Varani, Alessandro M. [UNESP]
Pena, Michelle M. [UNESP]
Ferreira, Henrique [UNESP]
author_role author
author2 Pedrolli, Danielle B. [UNESP]
Martins, Paula M. M.
Bocchini, Daniela A. [UNESP]
Moraes, Karen C. M. [UNESP]
Facincani, Agda P. [UNESP]
Ferro, Jesus A. [UNESP]
Varani, Alessandro M. [UNESP]
Pena, Michelle M. [UNESP]
Ferreira, Henrique [UNESP]
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Agronomic Institute of Sao Paulo (IAC)
dc.contributor.author.fl_str_mv Bueno, Danilo [UNESP]
Pedrolli, Danielle B. [UNESP]
Martins, Paula M. M.
Bocchini, Daniela A. [UNESP]
Moraes, Karen C. M. [UNESP]
Facincani, Agda P. [UNESP]
Ferro, Jesus A. [UNESP]
Varani, Alessandro M. [UNESP]
Pena, Michelle M. [UNESP]
Ferreira, Henrique [UNESP]
dc.subject.por.fl_str_mv Chromosome segregation
Citrus canker
ParB
PNPTS138 sequence
Regulation of gene expression
topic Chromosome segregation
Citrus canker
ParB
PNPTS138 sequence
Regulation of gene expression
description Xanthomonas citri subsp. citri (X. citri) is the causal agent of Asiatic Citrus Canker (ACC), a disease that affects citrus. ACC has no cure, and growers must rely on special agricultural practices to prevent bacterial spreading. Understanding X. citri basic biology is essential to foresee potential genetic targets to control ACC. Traditionally, microbial genetics use gene deletion/disruption to investigate gene function. However, essential genes are difficult to study this way. Techniques based on small-RNAs and antisense-RNAs are powerful for gene characterization, but not yet fully explored in prokaryotes. One alternative is riboswitches, which derive from bacteria, and can control transcription/translation. Riboswitches are non-coding RNAs able to modulate gene expression in the presence of specific ligands. Here we demonstrate that the riboswitch theo/metE decreases parB expression in X. citri in a platform responsive to theophylline. By monitoring cell respiration, we showed that higher concentrations of the ligand interfered with bacterial viability. Therefore, we determined the safe dose of theophylline to be used with X. citri. Finally, in downstream investigations of parB transcription modulation, we show evidence for the fact that ParB is stable, remains functional throughout the cell cycle, and is inherited by the daughter cells upon cell division.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T10:51:48Z
2021-06-25T10:51:48Z
2021-02-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/microorganisms9020329
Microorganisms, v. 9, n. 2, p. 1-15, 2021.
2076-2607
http://hdl.handle.net/11449/207245
10.3390/microorganisms9020329
2-s2.0-85100497237
url http://dx.doi.org/10.3390/microorganisms9020329
http://hdl.handle.net/11449/207245
identifier_str_mv Microorganisms, v. 9, n. 2, p. 1-15, 2021.
2076-2607
10.3390/microorganisms9020329
2-s2.0-85100497237
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Microorganisms
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1-15
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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