Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)

Detalhes bibliográficos
Autor(a) principal: Rancilhac, Loïs
Data de Publicação: 2020
Outros Autores: Bruy, Teddy, Scherz, Mark D., Pereira, Elvis Almeida, Preick, Michaela, Straube, Nicolas, Lyra, Mariana L. [UNESP], Ohler, Annemarie, Streicher, Jeffrey W., Andreone, Franco, Crottini, Angelica, Hutter, Carl R., Randrianantoandro, J. Christian, Rakotoarison, Andolalao, Glaw, Frank, Hofreiter, Michael, Vences, Miguel
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1080/00222933.2020.1748243
http://hdl.handle.net/11449/198811
Resumo: The subgenus Mantidactylus is a group of frogs endemic to Madagascar, including the largest anuran species on the island. Although these frogs are common and widely distributed, their taxonomy remains unclear. Two species are currently recognised, M. grandidieri and M. guttulatus, with another available name, Rana pigra, considered to be a synonym of M. grandidieri. However, molecular studies have suggested the presence of several cryptic species within the group. Additionally, due to the lack of prominent morphological features, allocating the available names to evolutionary lineages has proven challenging. In the present study, we take a first step towards solving these problems by using fragments of the 16S mitochondrial gene and RAG1 nuclear gene from all over the range of the subgenus to describe its genetic diversity. We also use a newly designed target enrichment laboratory protocol to sequence three mitochondrial fragments from five name-holding museum specimens (as old as 120 years) in order to determine to which lineages the existing names should be applied. The study of the 16S mitochondrial gene revealed 7 geographically separated lineages, distinct enough to be considered candidate species. Out of the five museum specimens analysed, four successfully yielded DNA sequences and could be attributed to one of the aforementioned lineages. Therefore, the name Mantidactylus grandidieri should be applied to the populations from North-Eastern Madagascar, while M. guttulatus refers to populations from inland localities along the Eastern coast of the island. On the other hand, the holotype of Rana pigra did not yield enough genetic material to allow definitive identification. While our data were not sufficient to assess the status of the four lineages distributed along the Eastern coast, the populations from North-Western Madagascar were highly distinct on both the mitochondrial and nuclear markers. We thus describe them as a new species, M. radaka sp. nov. http://www.zoobank.org/urn:lsid:zoobank.org:pub:1EDDAF0D-FE37-490A-B09E-E136A0C5CB35.
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spelling Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)AnuraMadagascarMantidactylus grandidieriMantidactylus guttulatusMantidactylus radaka sp. novTarget enrichmentThe subgenus Mantidactylus is a group of frogs endemic to Madagascar, including the largest anuran species on the island. Although these frogs are common and widely distributed, their taxonomy remains unclear. Two species are currently recognised, M. grandidieri and M. guttulatus, with another available name, Rana pigra, considered to be a synonym of M. grandidieri. However, molecular studies have suggested the presence of several cryptic species within the group. Additionally, due to the lack of prominent morphological features, allocating the available names to evolutionary lineages has proven challenging. In the present study, we take a first step towards solving these problems by using fragments of the 16S mitochondrial gene and RAG1 nuclear gene from all over the range of the subgenus to describe its genetic diversity. We also use a newly designed target enrichment laboratory protocol to sequence three mitochondrial fragments from five name-holding museum specimens (as old as 120 years) in order to determine to which lineages the existing names should be applied. The study of the 16S mitochondrial gene revealed 7 geographically separated lineages, distinct enough to be considered candidate species. Out of the five museum specimens analysed, four successfully yielded DNA sequences and could be attributed to one of the aforementioned lineages. Therefore, the name Mantidactylus grandidieri should be applied to the populations from North-Eastern Madagascar, while M. guttulatus refers to populations from inland localities along the Eastern coast of the island. On the other hand, the holotype of Rana pigra did not yield enough genetic material to allow definitive identification. While our data were not sufficient to assess the status of the four lineages distributed along the Eastern coast, the populations from North-Western Madagascar were highly distinct on both the mitochondrial and nuclear markers. We thus describe them as a new species, M. radaka sp. nov. http://www.zoobank.org/urn:lsid:zoobank.org:pub:1EDDAF0D-FE37-490A-B09E-E136A0C5CB35.Zoological Institute Braunschweig University of TechnologySektion Herpetologie Zoologische Staatssammlung München (ZSM-SNSB)Institut de Systématique Biodiversité (ISYEB) Sorbonne UniversitéPrograma de Pós-Graduação em Biologia Animal Departamento de Biologia Animal Laboratório de Herpetologia Universidade Federal Rural do Rio de JaneiroFaculty of Mathematics and Natural Sciences Institute for Biochemistry and Biology University of PotsdamDepartment of Natural History University Museum of BergenDepto de Zoologia Instituto de Biologia Universidade Estadual Paulista - UNESPDepartment of Life Sciences The Natural History Museum, Cromwell RoadMuseo Regionale di Scienze NaturaliResearch Centre in Biodiversity Genetics and Evolution Universidade do PortoBiodiversity Institute and Department of Ecology and Evolutionary Biology University of KansasMention Zoologie et Biodiversité Animale Faculté des Sciences Université d’AntananarivoDepto de Zoologia Instituto de Biologia Universidade Estadual Paulista - UNESPBraunschweig University of TechnologyZoologische Staatssammlung München (ZSM-SNSB)Sorbonne UniversitéUniversidade Federal Rural do Rio de JaneiroUniversity of PotsdamUniversity Museum of BergenUniversidade Estadual Paulista (Unesp)The Natural History MuseumMuseo Regionale di Scienze NaturaliUniversidade do PortoUniversity of KansasUniversité d’AntananarivoRancilhac, LoïsBruy, TeddyScherz, Mark D.Pereira, Elvis AlmeidaPreick, MichaelaStraube, NicolasLyra, Mariana L. [UNESP]Ohler, AnnemarieStreicher, Jeffrey W.Andreone, FrancoCrottini, AngelicaHutter, Carl R.Randrianantoandro, J. ChristianRakotoarison, AndolalaoGlaw, FrankHofreiter, MichaelVences, Miguel2020-12-12T01:22:39Z2020-12-12T01:22:39Z2020-01-17info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article87-118http://dx.doi.org/10.1080/00222933.2020.1748243Journal of Natural History, v. 54, n. 1-4, p. 87-118, 2020.1464-52620022-2933http://hdl.handle.net/11449/19881110.1080/00222933.2020.17482432-s2.0-85084311964Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Natural Historyinfo:eu-repo/semantics/openAccess2021-10-22T20:28:57Zoai:repositorio.unesp.br:11449/198811Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:04:43.138553Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
title Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
spellingShingle Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
Rancilhac, Loïs
Anura
Madagascar
Mantidactylus grandidieri
Mantidactylus guttulatus
Mantidactylus radaka sp. nov
Target enrichment
title_short Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
title_full Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
title_fullStr Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
title_full_unstemmed Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
title_sort Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)
author Rancilhac, Loïs
author_facet Rancilhac, Loïs
Bruy, Teddy
Scherz, Mark D.
Pereira, Elvis Almeida
Preick, Michaela
Straube, Nicolas
Lyra, Mariana L. [UNESP]
Ohler, Annemarie
Streicher, Jeffrey W.
Andreone, Franco
Crottini, Angelica
Hutter, Carl R.
Randrianantoandro, J. Christian
Rakotoarison, Andolalao
Glaw, Frank
Hofreiter, Michael
Vences, Miguel
author_role author
author2 Bruy, Teddy
Scherz, Mark D.
Pereira, Elvis Almeida
Preick, Michaela
Straube, Nicolas
Lyra, Mariana L. [UNESP]
Ohler, Annemarie
Streicher, Jeffrey W.
Andreone, Franco
Crottini, Angelica
Hutter, Carl R.
Randrianantoandro, J. Christian
Rakotoarison, Andolalao
Glaw, Frank
Hofreiter, Michael
Vences, Miguel
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Braunschweig University of Technology
Zoologische Staatssammlung München (ZSM-SNSB)
Sorbonne Université
Universidade Federal Rural do Rio de Janeiro
University of Potsdam
University Museum of Bergen
Universidade Estadual Paulista (Unesp)
The Natural History Museum
Museo Regionale di Scienze Naturali
Universidade do Porto
University of Kansas
Université d’Antananarivo
dc.contributor.author.fl_str_mv Rancilhac, Loïs
Bruy, Teddy
Scherz, Mark D.
Pereira, Elvis Almeida
Preick, Michaela
Straube, Nicolas
Lyra, Mariana L. [UNESP]
Ohler, Annemarie
Streicher, Jeffrey W.
Andreone, Franco
Crottini, Angelica
Hutter, Carl R.
Randrianantoandro, J. Christian
Rakotoarison, Andolalao
Glaw, Frank
Hofreiter, Michael
Vences, Miguel
dc.subject.por.fl_str_mv Anura
Madagascar
Mantidactylus grandidieri
Mantidactylus guttulatus
Mantidactylus radaka sp. nov
Target enrichment
topic Anura
Madagascar
Mantidactylus grandidieri
Mantidactylus guttulatus
Mantidactylus radaka sp. nov
Target enrichment
description The subgenus Mantidactylus is a group of frogs endemic to Madagascar, including the largest anuran species on the island. Although these frogs are common and widely distributed, their taxonomy remains unclear. Two species are currently recognised, M. grandidieri and M. guttulatus, with another available name, Rana pigra, considered to be a synonym of M. grandidieri. However, molecular studies have suggested the presence of several cryptic species within the group. Additionally, due to the lack of prominent morphological features, allocating the available names to evolutionary lineages has proven challenging. In the present study, we take a first step towards solving these problems by using fragments of the 16S mitochondrial gene and RAG1 nuclear gene from all over the range of the subgenus to describe its genetic diversity. We also use a newly designed target enrichment laboratory protocol to sequence three mitochondrial fragments from five name-holding museum specimens (as old as 120 years) in order to determine to which lineages the existing names should be applied. The study of the 16S mitochondrial gene revealed 7 geographically separated lineages, distinct enough to be considered candidate species. Out of the five museum specimens analysed, four successfully yielded DNA sequences and could be attributed to one of the aforementioned lineages. Therefore, the name Mantidactylus grandidieri should be applied to the populations from North-Eastern Madagascar, while M. guttulatus refers to populations from inland localities along the Eastern coast of the island. On the other hand, the holotype of Rana pigra did not yield enough genetic material to allow definitive identification. While our data were not sufficient to assess the status of the four lineages distributed along the Eastern coast, the populations from North-Western Madagascar were highly distinct on both the mitochondrial and nuclear markers. We thus describe them as a new species, M. radaka sp. nov. http://www.zoobank.org/urn:lsid:zoobank.org:pub:1EDDAF0D-FE37-490A-B09E-E136A0C5CB35.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-12T01:22:39Z
2020-12-12T01:22:39Z
2020-01-17
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1080/00222933.2020.1748243
Journal of Natural History, v. 54, n. 1-4, p. 87-118, 2020.
1464-5262
0022-2933
http://hdl.handle.net/11449/198811
10.1080/00222933.2020.1748243
2-s2.0-85084311964
url http://dx.doi.org/10.1080/00222933.2020.1748243
http://hdl.handle.net/11449/198811
identifier_str_mv Journal of Natural History, v. 54, n. 1-4, p. 87-118, 2020.
1464-5262
0022-2933
10.1080/00222933.2020.1748243
2-s2.0-85084311964
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Natural History
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 87-118
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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