The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)

Detalhes bibliográficos
Autor(a) principal: Lyra, Mariana L. [UNESP]
Data de Publicação: 2017
Outros Autores: Sanchez, Eugenia, Kuenzel, Sven, Loetters, Stefan, Haddad, Celio F. B. [UNESP], Vences, Miguel
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1080/23802359.2017.1347830
http://hdl.handle.net/11449/163755
Resumo: We reconstructed nearly complete mitogenomes for three species of poison frogs, Dendrobates auratus, D. leucomelas, and D. tinctorius, from RNAseq data. We recovered the 13 protein-coding genes, 22 tRNA genes (except tRNA-Val for D. leucomelas), and two rRNA genes for all three species, plus partial sequences of the control region. The order of genes agrees with that known from a previously sequenced D. auratus, being the most commonly found for neobatrachian frogs. Based on full-sibling comparisons we estimate the probable error rate of Illumina-RNAseq reconstructed mitogenomes of up to 0.15%.
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spelling The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)AmphibiaAnuraDendrobatidaemitogenomesRNAseqWe reconstructed nearly complete mitogenomes for three species of poison frogs, Dendrobates auratus, D. leucomelas, and D. tinctorius, from RNAseq data. We recovered the 13 protein-coding genes, 22 tRNA genes (except tRNA-Val for D. leucomelas), and two rRNA genes for all three species, plus partial sequences of the control region. The order of genes agrees with that known from a previously sequenced D. auratus, being the most commonly found for neobatrachian frogs. Based on full-sibling comparisons we estimate the probable error rate of Illumina-RNAseq reconstructed mitogenomes of up to 0.15%.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Sao Paulo State Univ UNESP, Biosci Inst, Dept Zool, Campus Rio Claro, Rio Claro, SP, BrazilSao Paulo State Univ UNESP, Biosci Inst, Aquiculture Ctr CAUNESP, Campus Rio Claro, Rio Claro, SP, BrazilTech Univ Carolo Wilhelmina Braunschweig, Zool Inst, Braunschweig, GermanyMax Planck Inst Evolutionary Biol, Dept Evolutionary Genet, Plon, GermanyTrier Univ, Biogeog Dept, Trier, GermanySao Paulo State Univ UNESP, Biosci Inst, Dept Zool, Campus Rio Claro, Rio Claro, SP, BrazilSao Paulo State Univ UNESP, Biosci Inst, Aquiculture Ctr CAUNESP, Campus Rio Claro, Rio Claro, SP, BrazilFAPESP: 2013/50741-7CAPES: 88881.062205/2014-01Taylor & Francis LtdUniversidade Estadual Paulista (Unesp)Tech Univ Carolo Wilhelmina BraunschweigMax Planck Inst Evolutionary BiolTrier UnivLyra, Mariana L. [UNESP]Sanchez, EugeniaKuenzel, SvenLoetters, StefanHaddad, Celio F. B. [UNESP]Vences, Miguel2018-11-26T17:44:50Z2018-11-26T17:44:50Z2017-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article397-399application/pdfhttp://dx.doi.org/10.1080/23802359.2017.1347830Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 2, p. 397-399, 2017.2380-2359http://hdl.handle.net/11449/16375510.1080/23802359.2017.1347830WOS:000423158500011WOS000423158500011.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial Dna Part B-resources0,180info:eu-repo/semantics/openAccess2023-11-28T06:12:25Zoai:repositorio.unesp.br:11449/163755Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:54:56.865597Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
title The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
spellingShingle The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
Lyra, Mariana L. [UNESP]
Amphibia
Anura
Dendrobatidae
mitogenomes
RNAseq
title_short The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
title_full The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
title_fullStr The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
title_full_unstemmed The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
title_sort The mitochondrial genomes of three species of poison frogs (Anura:Dendrobates)
author Lyra, Mariana L. [UNESP]
author_facet Lyra, Mariana L. [UNESP]
Sanchez, Eugenia
Kuenzel, Sven
Loetters, Stefan
Haddad, Celio F. B. [UNESP]
Vences, Miguel
author_role author
author2 Sanchez, Eugenia
Kuenzel, Sven
Loetters, Stefan
Haddad, Celio F. B. [UNESP]
Vences, Miguel
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Tech Univ Carolo Wilhelmina Braunschweig
Max Planck Inst Evolutionary Biol
Trier Univ
dc.contributor.author.fl_str_mv Lyra, Mariana L. [UNESP]
Sanchez, Eugenia
Kuenzel, Sven
Loetters, Stefan
Haddad, Celio F. B. [UNESP]
Vences, Miguel
dc.subject.por.fl_str_mv Amphibia
Anura
Dendrobatidae
mitogenomes
RNAseq
topic Amphibia
Anura
Dendrobatidae
mitogenomes
RNAseq
description We reconstructed nearly complete mitogenomes for three species of poison frogs, Dendrobates auratus, D. leucomelas, and D. tinctorius, from RNAseq data. We recovered the 13 protein-coding genes, 22 tRNA genes (except tRNA-Val for D. leucomelas), and two rRNA genes for all three species, plus partial sequences of the control region. The order of genes agrees with that known from a previously sequenced D. auratus, being the most commonly found for neobatrachian frogs. Based on full-sibling comparisons we estimate the probable error rate of Illumina-RNAseq reconstructed mitogenomes of up to 0.15%.
publishDate 2017
dc.date.none.fl_str_mv 2017-01-01
2018-11-26T17:44:50Z
2018-11-26T17:44:50Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1080/23802359.2017.1347830
Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 2, p. 397-399, 2017.
2380-2359
http://hdl.handle.net/11449/163755
10.1080/23802359.2017.1347830
WOS:000423158500011
WOS000423158500011.pdf
url http://dx.doi.org/10.1080/23802359.2017.1347830
http://hdl.handle.net/11449/163755
identifier_str_mv Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 2, p. 397-399, 2017.
2380-2359
10.1080/23802359.2017.1347830
WOS:000423158500011
WOS000423158500011.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mitochondrial Dna Part B-resources
0,180
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 397-399
application/pdf
dc.publisher.none.fl_str_mv Taylor & Francis Ltd
publisher.none.fl_str_mv Taylor & Francis Ltd
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1808128998851477504

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