Defense response-like reaction associated with an anomaly in Eucalyptus grandis
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1007/s00468-022-02288-y http://hdl.handle.net/11449/234321 |
Resumo: | Key message: Based on transcriptome and qPCR analysis, a phenotypic abnormality resulting from a Eucalyptus crossing is associated with overexpression of metabolic pathways related to defense responses against biotic and abiotic stress. Abstract: Genetic recombination by outcrossing, a strategy used in improvement programs, can present a low frequency of individuals within progeny with morphological and physiological abnormalities. An abnormality was identified in progeny from a controlled cross of Eucalyptus grandis. Applying RNA-Seq technology to leaf, stem, and root tissue of normal and abnormal seedlings grown under the same greenhouse conditions, we examined global gene expression changes and compared the transcriptional profiles of the two contrasting phenotypes. We also conducted functional enrichment and metabolic pathway analyses. Among the identified differentially expressed genes, most were upregulated in leaf and stem tissues of abnormal plants, with gene ontology (GO) terms associated with 'response to stress', 'response to stimulus', and 'immune system process' categories. Further, in differential gene expression and functional enrichment analyses, we observed overexpression of metabolic pathways related to defense response processes in abnormal plants. Our results suggest that the anomaly is associated with changes in the defense response to biotic and abiotic stresses. As all progeny were grown in a controlled environment and there was no evidence of pathogenic attacks, the defense response in abnormal plants may be due to an autoimmune mechanism caused by genetic incompatibility. |
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Defense response-like reaction associated with an anomaly in Eucalyptus grandisAutoimmune syndromeDefense responseDeleterious phenotypeDifferential gene expressionGenetic incompatibilityKey message: Based on transcriptome and qPCR analysis, a phenotypic abnormality resulting from a Eucalyptus crossing is associated with overexpression of metabolic pathways related to defense responses against biotic and abiotic stress. Abstract: Genetic recombination by outcrossing, a strategy used in improvement programs, can present a low frequency of individuals within progeny with morphological and physiological abnormalities. An abnormality was identified in progeny from a controlled cross of Eucalyptus grandis. Applying RNA-Seq technology to leaf, stem, and root tissue of normal and abnormal seedlings grown under the same greenhouse conditions, we examined global gene expression changes and compared the transcriptional profiles of the two contrasting phenotypes. We also conducted functional enrichment and metabolic pathway analyses. Among the identified differentially expressed genes, most were upregulated in leaf and stem tissues of abnormal plants, with gene ontology (GO) terms associated with 'response to stress', 'response to stimulus', and 'immune system process' categories. Further, in differential gene expression and functional enrichment analyses, we observed overexpression of metabolic pathways related to defense response processes in abnormal plants. Our results suggest that the anomaly is associated with changes in the defense response to biotic and abiotic stresses. As all progeny were grown in a controlled environment and there was no evidence of pathogenic attacks, the defense response in abnormal plants may be due to an autoimmune mechanism caused by genetic incompatibility.Departamento de Ciências Químicas e Biológicas Instituto de Biociências Universidade Estadual Paulista (UNESP), SPInstituto de Biotecnologia Universidade Estadual Paulista (UNESP), SPDepartamento de Biofísica e Farmacologia Instituto de Biociências Universidade Estadual Paulista (UNESP), SPLuxembourg Centre for Systems Biomedicine (LCSB) University of LuxembourgEmpresa Suzano Papel e Celulose SA, Av. Dr. José Lembo 1010, SPPlant Pathology and Entomology Section Department of Agricultural Food Environmental and Forestry Science and Technology (DAGRI) University of Florence, Florence provinceSchool of Agriculture São Paulo State University (Unesp), SPDepartamento de Ciências Químicas e Biológicas Instituto de Biociências Universidade Estadual Paulista (UNESP), SPInstituto de Biotecnologia Universidade Estadual Paulista (UNESP), SPDepartamento de Biofísica e Farmacologia Instituto de Biociências Universidade Estadual Paulista (UNESP), SPSchool of Agriculture São Paulo State University (Unesp), SPUniversidade Estadual Paulista (UNESP)University of LuxembourgEmpresa Suzano Papel e Celulose SAUniversity of FlorenceFuchs, Maria C. P. [UNESP]Rossini, Bruno C. [UNESP]Acencio, Marcio L. [UNESP]Lemke, Ney [UNESP]González, Esteban R.Moricca, SalvatorePanzavolta, TizianaFurtado, Edson L. [UNESP]Oda, ShinitiroMarino, Celso L. [UNESP]2022-05-01T15:46:21Z2022-05-01T15:46:21Z2022-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1007/s00468-022-02288-yTrees - Structure and Function.0931-1890http://hdl.handle.net/11449/23432110.1007/s00468-022-02288-y2-s2.0-85127188011Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengTrees - Structure and Functioninfo:eu-repo/semantics/openAccess2022-05-01T15:46:21Zoai:repositorio.unesp.br:11449/234321Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:04:48.833567Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis |
title |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis |
spellingShingle |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis Fuchs, Maria C. P. [UNESP] Autoimmune syndrome Defense response Deleterious phenotype Differential gene expression Genetic incompatibility |
title_short |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis |
title_full |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis |
title_fullStr |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis |
title_full_unstemmed |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis |
title_sort |
Defense response-like reaction associated with an anomaly in Eucalyptus grandis |
author |
Fuchs, Maria C. P. [UNESP] |
author_facet |
Fuchs, Maria C. P. [UNESP] Rossini, Bruno C. [UNESP] Acencio, Marcio L. [UNESP] Lemke, Ney [UNESP] González, Esteban R. Moricca, Salvatore Panzavolta, Tiziana Furtado, Edson L. [UNESP] Oda, Shinitiro Marino, Celso L. [UNESP] |
author_role |
author |
author2 |
Rossini, Bruno C. [UNESP] Acencio, Marcio L. [UNESP] Lemke, Ney [UNESP] González, Esteban R. Moricca, Salvatore Panzavolta, Tiziana Furtado, Edson L. [UNESP] Oda, Shinitiro Marino, Celso L. [UNESP] |
author2_role |
author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) University of Luxembourg Empresa Suzano Papel e Celulose SA University of Florence |
dc.contributor.author.fl_str_mv |
Fuchs, Maria C. P. [UNESP] Rossini, Bruno C. [UNESP] Acencio, Marcio L. [UNESP] Lemke, Ney [UNESP] González, Esteban R. Moricca, Salvatore Panzavolta, Tiziana Furtado, Edson L. [UNESP] Oda, Shinitiro Marino, Celso L. [UNESP] |
dc.subject.por.fl_str_mv |
Autoimmune syndrome Defense response Deleterious phenotype Differential gene expression Genetic incompatibility |
topic |
Autoimmune syndrome Defense response Deleterious phenotype Differential gene expression Genetic incompatibility |
description |
Key message: Based on transcriptome and qPCR analysis, a phenotypic abnormality resulting from a Eucalyptus crossing is associated with overexpression of metabolic pathways related to defense responses against biotic and abiotic stress. Abstract: Genetic recombination by outcrossing, a strategy used in improvement programs, can present a low frequency of individuals within progeny with morphological and physiological abnormalities. An abnormality was identified in progeny from a controlled cross of Eucalyptus grandis. Applying RNA-Seq technology to leaf, stem, and root tissue of normal and abnormal seedlings grown under the same greenhouse conditions, we examined global gene expression changes and compared the transcriptional profiles of the two contrasting phenotypes. We also conducted functional enrichment and metabolic pathway analyses. Among the identified differentially expressed genes, most were upregulated in leaf and stem tissues of abnormal plants, with gene ontology (GO) terms associated with 'response to stress', 'response to stimulus', and 'immune system process' categories. Further, in differential gene expression and functional enrichment analyses, we observed overexpression of metabolic pathways related to defense response processes in abnormal plants. Our results suggest that the anomaly is associated with changes in the defense response to biotic and abiotic stresses. As all progeny were grown in a controlled environment and there was no evidence of pathogenic attacks, the defense response in abnormal plants may be due to an autoimmune mechanism caused by genetic incompatibility. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-05-01T15:46:21Z 2022-05-01T15:46:21Z 2022-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s00468-022-02288-y Trees - Structure and Function. 0931-1890 http://hdl.handle.net/11449/234321 10.1007/s00468-022-02288-y 2-s2.0-85127188011 |
url |
http://dx.doi.org/10.1007/s00468-022-02288-y http://hdl.handle.net/11449/234321 |
identifier_str_mv |
Trees - Structure and Function. 0931-1890 10.1007/s00468-022-02288-y 2-s2.0-85127188011 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Trees - Structure and Function |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129016650006528 |