The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.bse.2016.12.009 http://hdl.handle.net/11449/159539 |
Resumo: | The mitochondrial genome of Brachycephalus brunneus was determined by next generation sequencing of mitochondrial DNA. Without its control region, it has a total length of 15,485 bp, consisting of 37 genes: 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. Except for eight tRNAs and the nd6 gene, all other mitochondrial genes are encoded on the heavy strand. ATG and ATC act mainly as the initial codon in 10 protein coding genes, whereas nd2 and cox1 use ATT and nad3 uses ATA. Gene order is generally consistent with that observed in closely-related families. The cloverleaf structures for trnS1 and trnC lacked the DHU-stem and DHU-loop, respectively. Phylogenetic analyses of mitogenomes of closely-related families indicate that Brachycephalidae is more closely related to Craugastoridae than to Eleutherodactylidae. This is the first sequenced mitochondrial genome for the entire Brachycephalidae and can provide the basis for the development of mitochondrial markers for other members of the family, including many species that are critically endangered. (C) 2017 Elsevier Ltd. All rights reserved. |
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The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of BrachycephalidaeAnuranBrazilTerraranaAtlantic forestThe mitochondrial genome of Brachycephalus brunneus was determined by next generation sequencing of mitochondrial DNA. Without its control region, it has a total length of 15,485 bp, consisting of 37 genes: 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. Except for eight tRNAs and the nd6 gene, all other mitochondrial genes are encoded on the heavy strand. ATG and ATC act mainly as the initial codon in 10 protein coding genes, whereas nd2 and cox1 use ATT and nad3 uses ATA. Gene order is generally consistent with that observed in closely-related families. The cloverleaf structures for trnS1 and trnC lacked the DHU-stem and DHU-loop, respectively. Phylogenetic analyses of mitogenomes of closely-related families indicate that Brachycephalidae is more closely related to Craugastoridae than to Eleutherodactylidae. This is the first sequenced mitochondrial genome for the entire Brachycephalidae and can provide the basis for the development of mitochondrial markers for other members of the family, including many species that are critically endangered. (C) 2017 Elsevier Ltd. All rights reserved.Fundacao Grupo Boticario de Protecao a NaturezaConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Univ Fed Parana, Dept Zool, BR-81531990 Curitiba, Parana, BrazilInst Estudos Ambientais, Mater Nat, BR-80250020 Curitiba, Parana, BrazilUniv Estadual Paulista, Inst Biociencias, Praca Infante Dom Henrique S-No,Parque Bitaru, BR-11330900 Sao Paulo, BrazilPontificia Univ Catolica Parana, Escola Saude, BR-80215901 Curitiba, Parana, BrazilLouisiana State Univ, Dept Biol Sci, Baton Rouge, LA 70803 USALouisiana State Univ, Museum Nat Sci, Baton Rouge, LA 70803 USAOccidental Coll, Moore Lab Zool, 1600 Campus Rd, Los Angeles, CA 90041 USAUniv Estadual Paulista, Inst Biociencias, Praca Infante Dom Henrique S-No,Parque Bitaru, BR-11330900 Sao Paulo, BrazilFundacao Grupo Boticario de Protecao a Natureza: 0895_20111Fundacao Grupo Boticario de Protecao a Natureza: A0010_2014CNPq: 571334/2008-3Elsevier B.V.Univ Fed ParanaInst Estudos AmbientaisUniversidade Estadual Paulista (Unesp)Pontificia Univ Catolica ParanaLouisiana State UnivOccidental CollPie, Marcio R.Stroher, Patricia R.Bornschein, Marcos R. [UNESP]Ribeiro, Luiz F.Faircloth, Brant C.McCormack, John E.2018-11-26T15:44:12Z2018-11-26T15:44:12Z2017-04-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article26-31application/pdfhttp://dx.doi.org/10.1016/j.bse.2016.12.009Biochemical Systematics And Ecology. Oxford: Pergamon-elsevier Science Ltd, v. 71, p. 26-31, 2017.0305-1978http://hdl.handle.net/11449/15953910.1016/j.bse.2016.12.009WOS:000401046000004WOS000401046000004.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBiochemical Systematics And Ecology0,373info:eu-repo/semantics/openAccess2023-10-11T06:06:50Zoai:repositorio.unesp.br:11449/159539Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:37:16.256837Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae |
title |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae |
spellingShingle |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae Pie, Marcio R. Anuran Brazil Terrarana Atlantic forest |
title_short |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae |
title_full |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae |
title_fullStr |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae |
title_full_unstemmed |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae |
title_sort |
The mitochondrial genome of Brachycephalus brunneus (Anura: Brachycephalidae), with comments on the phylogenetic position of Brachycephalidae |
author |
Pie, Marcio R. |
author_facet |
Pie, Marcio R. Stroher, Patricia R. Bornschein, Marcos R. [UNESP] Ribeiro, Luiz F. Faircloth, Brant C. McCormack, John E. |
author_role |
author |
author2 |
Stroher, Patricia R. Bornschein, Marcos R. [UNESP] Ribeiro, Luiz F. Faircloth, Brant C. McCormack, John E. |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Univ Fed Parana Inst Estudos Ambientais Universidade Estadual Paulista (Unesp) Pontificia Univ Catolica Parana Louisiana State Univ Occidental Coll |
dc.contributor.author.fl_str_mv |
Pie, Marcio R. Stroher, Patricia R. Bornschein, Marcos R. [UNESP] Ribeiro, Luiz F. Faircloth, Brant C. McCormack, John E. |
dc.subject.por.fl_str_mv |
Anuran Brazil Terrarana Atlantic forest |
topic |
Anuran Brazil Terrarana Atlantic forest |
description |
The mitochondrial genome of Brachycephalus brunneus was determined by next generation sequencing of mitochondrial DNA. Without its control region, it has a total length of 15,485 bp, consisting of 37 genes: 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. Except for eight tRNAs and the nd6 gene, all other mitochondrial genes are encoded on the heavy strand. ATG and ATC act mainly as the initial codon in 10 protein coding genes, whereas nd2 and cox1 use ATT and nad3 uses ATA. Gene order is generally consistent with that observed in closely-related families. The cloverleaf structures for trnS1 and trnC lacked the DHU-stem and DHU-loop, respectively. Phylogenetic analyses of mitogenomes of closely-related families indicate that Brachycephalidae is more closely related to Craugastoridae than to Eleutherodactylidae. This is the first sequenced mitochondrial genome for the entire Brachycephalidae and can provide the basis for the development of mitochondrial markers for other members of the family, including many species that are critically endangered. (C) 2017 Elsevier Ltd. All rights reserved. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-04-01 2018-11-26T15:44:12Z 2018-11-26T15:44:12Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.bse.2016.12.009 Biochemical Systematics And Ecology. Oxford: Pergamon-elsevier Science Ltd, v. 71, p. 26-31, 2017. 0305-1978 http://hdl.handle.net/11449/159539 10.1016/j.bse.2016.12.009 WOS:000401046000004 WOS000401046000004.pdf |
url |
http://dx.doi.org/10.1016/j.bse.2016.12.009 http://hdl.handle.net/11449/159539 |
identifier_str_mv |
Biochemical Systematics And Ecology. Oxford: Pergamon-elsevier Science Ltd, v. 71, p. 26-31, 2017. 0305-1978 10.1016/j.bse.2016.12.009 WOS:000401046000004 WOS000401046000004.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Biochemical Systematics And Ecology 0,373 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
26-31 application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier B.V. |
publisher.none.fl_str_mv |
Elsevier B.V. |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128389129699328 |