Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars

Detalhes bibliográficos
Autor(a) principal: Raya, Fabio Trigo
Data de Publicação: 2021
Outros Autores: Marone, Marina Pupke, Carvalho, Lucas Miguel, Rabelo, Sarita Candida [UNESP], de Paula, Maiki Soares, Campanari, Maria Fernanda Zaneli, Freschi, Luciano, Mayer, Juliana Lischka Sampaio, Silva, Odilon Reny Ribeiro Ferreira, Mieczkowski, Piotr, Carazzolle, Marcelo Falsarella, Pereira, Gonçalo Amarante Guimarães
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.indcrop.2021.114043
http://hdl.handle.net/11449/222420
Resumo: Agaves have been used for centuries as a feedstock in dryland areas for fibers, food, and beverages, and have enormous potential for biofuel production. Brazil is the world's largest producer of Agave fiber (sisal). However, since the development of synthetic fibers, the national investment in Agave research has decreased drastically, leading to the cessation of the country's breeding programs. What is left of the Brazilian elite cultivars were planted at a germplasm bank in the middle of the semiarid. Surprisingly, after 7 years of abandonment, the plants were still healthy and did not show any clear signs of stress. Here, we aimed to investigate how these plants managed to cope with this environment and the molecular basis of their biomass traits. We assembled the transcriptomic atlas of Agave sisalana, Agave fourcroydes, and Agave hybrid 11648 ((A. amaniensis x A. angustifolia) x A. amaniensis). We observed that the cultivars activated a highly overlapping set of stress-response genes, which were the most expressed transcripts. Also, raffinose was detected at high concentrations, possibly acting as an osmolyte, though differences at its biosynthesis have been found depending on cultivar. Finally, we observed differences in recalcitrance that could be attributed to lignin composition and its biosynthetic pathway. Our data contribute new insights that can help molecular breeders to correspond to emerging expectations for Agave as biorenewables feedstocks for dryland areas.
id UNSP_7d8302257f0fb612729f0c069c6ed412
oai_identifier_str oai:repositorio.unesp.br:11449/222420
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivarsAbiotic stressBiomassGenetic resourcesRNA-SeqSisalAgaves have been used for centuries as a feedstock in dryland areas for fibers, food, and beverages, and have enormous potential for biofuel production. Brazil is the world's largest producer of Agave fiber (sisal). However, since the development of synthetic fibers, the national investment in Agave research has decreased drastically, leading to the cessation of the country's breeding programs. What is left of the Brazilian elite cultivars were planted at a germplasm bank in the middle of the semiarid. Surprisingly, after 7 years of abandonment, the plants were still healthy and did not show any clear signs of stress. Here, we aimed to investigate how these plants managed to cope with this environment and the molecular basis of their biomass traits. We assembled the transcriptomic atlas of Agave sisalana, Agave fourcroydes, and Agave hybrid 11648 ((A. amaniensis x A. angustifolia) x A. amaniensis). We observed that the cultivars activated a highly overlapping set of stress-response genes, which were the most expressed transcripts. Also, raffinose was detected at high concentrations, possibly acting as an osmolyte, though differences at its biosynthesis have been found depending on cultivar. Finally, we observed differences in recalcitrance that could be attributed to lignin composition and its biosynthetic pathway. Our data contribute new insights that can help molecular breeders to correspond to emerging expectations for Agave as biorenewables feedstocks for dryland areas.Laboratório de Genômica e BioEnergia Departamento de Genética Evolução Microbiologia e Imunologia UNICAMPDepartamento de Bioprocessos e Biotecnologia Faculdade de Ciências Agronômicas UNESPDepartamento de Botânica Instituto de Biociências USPLaboratório de Anatomia Vegetal Departamento de Biologia Vegetal UNICAMPEmpresa Brasileira de Pesquisa Agropecuária - Algodão EMBRAPAHigh-Throughput Sequencing Facility School of Medicine UNCCentro para Computação em Engenharia e Ciências UNICAMPDepartamento de Bioprocessos e Biotecnologia Faculdade de Ciências Agronômicas UNESPUniversidade Estadual de Campinas (UNICAMP)Universidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)UNCRaya, Fabio TrigoMarone, Marina PupkeCarvalho, Lucas MiguelRabelo, Sarita Candida [UNESP]de Paula, Maiki SoaresCampanari, Maria Fernanda ZaneliFreschi, LucianoMayer, Juliana Lischka SampaioSilva, Odilon Reny Ribeiro FerreiraMieczkowski, PiotrCarazzolle, Marcelo FalsarellaPereira, Gonçalo Amarante Guimarães2022-04-28T19:44:38Z2022-04-28T19:44:38Z2021-11-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.indcrop.2021.114043Industrial Crops and Products, v. 172.0926-6690http://hdl.handle.net/11449/22242010.1016/j.indcrop.2021.1140432-s2.0-85114908052Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengIndustrial Crops and Productsinfo:eu-repo/semantics/openAccess2022-04-28T19:44:38Zoai:repositorio.unesp.br:11449/222420Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-28T19:44:38Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
title Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
spellingShingle Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
Raya, Fabio Trigo
Abiotic stress
Biomass
Genetic resources
RNA-Seq
Sisal
title_short Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
title_full Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
title_fullStr Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
title_full_unstemmed Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
title_sort Extreme physiology: Biomass and transcriptional profiling of three abandoned Agave cultivars
author Raya, Fabio Trigo
author_facet Raya, Fabio Trigo
Marone, Marina Pupke
Carvalho, Lucas Miguel
Rabelo, Sarita Candida [UNESP]
de Paula, Maiki Soares
Campanari, Maria Fernanda Zaneli
Freschi, Luciano
Mayer, Juliana Lischka Sampaio
Silva, Odilon Reny Ribeiro Ferreira
Mieczkowski, Piotr
Carazzolle, Marcelo Falsarella
Pereira, Gonçalo Amarante Guimarães
author_role author
author2 Marone, Marina Pupke
Carvalho, Lucas Miguel
Rabelo, Sarita Candida [UNESP]
de Paula, Maiki Soares
Campanari, Maria Fernanda Zaneli
Freschi, Luciano
Mayer, Juliana Lischka Sampaio
Silva, Odilon Reny Ribeiro Ferreira
Mieczkowski, Piotr
Carazzolle, Marcelo Falsarella
Pereira, Gonçalo Amarante Guimarães
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual de Campinas (UNICAMP)
Universidade Estadual Paulista (UNESP)
Universidade de São Paulo (USP)
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
UNC
dc.contributor.author.fl_str_mv Raya, Fabio Trigo
Marone, Marina Pupke
Carvalho, Lucas Miguel
Rabelo, Sarita Candida [UNESP]
de Paula, Maiki Soares
Campanari, Maria Fernanda Zaneli
Freschi, Luciano
Mayer, Juliana Lischka Sampaio
Silva, Odilon Reny Ribeiro Ferreira
Mieczkowski, Piotr
Carazzolle, Marcelo Falsarella
Pereira, Gonçalo Amarante Guimarães
dc.subject.por.fl_str_mv Abiotic stress
Biomass
Genetic resources
RNA-Seq
Sisal
topic Abiotic stress
Biomass
Genetic resources
RNA-Seq
Sisal
description Agaves have been used for centuries as a feedstock in dryland areas for fibers, food, and beverages, and have enormous potential for biofuel production. Brazil is the world's largest producer of Agave fiber (sisal). However, since the development of synthetic fibers, the national investment in Agave research has decreased drastically, leading to the cessation of the country's breeding programs. What is left of the Brazilian elite cultivars were planted at a germplasm bank in the middle of the semiarid. Surprisingly, after 7 years of abandonment, the plants were still healthy and did not show any clear signs of stress. Here, we aimed to investigate how these plants managed to cope with this environment and the molecular basis of their biomass traits. We assembled the transcriptomic atlas of Agave sisalana, Agave fourcroydes, and Agave hybrid 11648 ((A. amaniensis x A. angustifolia) x A. amaniensis). We observed that the cultivars activated a highly overlapping set of stress-response genes, which were the most expressed transcripts. Also, raffinose was detected at high concentrations, possibly acting as an osmolyte, though differences at its biosynthesis have been found depending on cultivar. Finally, we observed differences in recalcitrance that could be attributed to lignin composition and its biosynthetic pathway. Our data contribute new insights that can help molecular breeders to correspond to emerging expectations for Agave as biorenewables feedstocks for dryland areas.
publishDate 2021
dc.date.none.fl_str_mv 2021-11-15
2022-04-28T19:44:38Z
2022-04-28T19:44:38Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.indcrop.2021.114043
Industrial Crops and Products, v. 172.
0926-6690
http://hdl.handle.net/11449/222420
10.1016/j.indcrop.2021.114043
2-s2.0-85114908052
url http://dx.doi.org/10.1016/j.indcrop.2021.114043
http://hdl.handle.net/11449/222420
identifier_str_mv Industrial Crops and Products, v. 172.
0926-6690
10.1016/j.indcrop.2021.114043
2-s2.0-85114908052
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Industrial Crops and Products
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799964857050595328