Site-Specific Nutrient Diagnosis of Orange Groves

Detalhes bibliográficos
Autor(a) principal: Yamane, Danilo Ricardo [UNESP]
Data de Publicação: 2022
Outros Autores: Parent, Serge-Étienne, Natale, William, Cecílio Filho, Arthur Bernardes [UNESP], Rozane, Danilo Eduardo [UNESP], Nowaki, Rodrigo Hiyoshi Dalmazzo [UNESP], Mattos Junior, Dirceu de, Parent, Léon Etienne
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/horticulturae8121126
http://hdl.handle.net/11449/249512
Resumo: Nutrient diagnosis of orange (Citrus sinensis) groves in Brazil relies on regional information from a limited number of studies transferred to other environments under the ceteris paribus assumption. Interpretation methods are based on crude nutrient compositions that are intrinsically biased by genetics X environment interactions. Our objective was to develop accurate and unbiased nutrient diagnosis of orange groves combining machine learning (ML) and compositional methods. Fruit yield and foliar nutrients were quantified in 551 rainfed 7–15-year-old orange groves of ‘Hamlin’, ‘Valência’, and ‘Pêra’ in the state of São Paulo, Brazil. The data set was further documented using soil classification, soil tests, and meteorological indices. Tissue compositions were log-ratio transformed to account for nutrient interactions. Ionomes differed among scions. Regression ML models showed evidence of overfitting. Binary ML classification models showed acceptable values of areas under the curve (>0.7). Regional standards delineating the multivariate elliptical hyperspace depended on the yield cutoff. A shapeless blob hyperspace was delineated using the k-nearest successful neighbors that showed comparable features and reported realistic yield goals. Regionally derived and site-specific reference compositions may lead to differential interpretation. Large-size and diversified data sets must be collected to inform ML models along the learning curve, tackle model overfitting, and evaluate the merit of blob-scale diagnosis.
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spelling Site-Specific Nutrient Diagnosis of Orange Grovescentered log ratiolocal diagnosismachine learningnutrient balanceNutrient diagnosis of orange (Citrus sinensis) groves in Brazil relies on regional information from a limited number of studies transferred to other environments under the ceteris paribus assumption. Interpretation methods are based on crude nutrient compositions that are intrinsically biased by genetics X environment interactions. Our objective was to develop accurate and unbiased nutrient diagnosis of orange groves combining machine learning (ML) and compositional methods. Fruit yield and foliar nutrients were quantified in 551 rainfed 7–15-year-old orange groves of ‘Hamlin’, ‘Valência’, and ‘Pêra’ in the state of São Paulo, Brazil. The data set was further documented using soil classification, soil tests, and meteorological indices. Tissue compositions were log-ratio transformed to account for nutrient interactions. Ionomes differed among scions. Regression ML models showed evidence of overfitting. Binary ML classification models showed acceptable values of areas under the curve (>0.7). Regional standards delineating the multivariate elliptical hyperspace depended on the yield cutoff. A shapeless blob hyperspace was delineated using the k-nearest successful neighbors that showed comparable features and reported realistic yield goals. Regionally derived and site-specific reference compositions may lead to differential interpretation. Large-size and diversified data sets must be collected to inform ML models along the learning curve, tackle model overfitting, and evaluate the merit of blob-scale diagnosis.Natural Sciences and Engineering Research Council of CanadaDepartment of Plant Production São Paulo State University (UNESP), SPDepartment of Soils and Agri-Food Engineering Université LavalDepartment of Plant Science Federal University of Ceará, CEDepartment of Agronomy São Paulo State University (UNESP), SPInstituto Agronômico de Campinas (IAC) Centro de Citricultura Sylvio Moreira, SPDepartment of Soils Federal University of Santa Maria, RSDepartment of Plant Production São Paulo State University (UNESP), SPDepartment of Agronomy São Paulo State University (UNESP), SPNatural Sciences and Engineering Research Council of Canada: #2254Universidade Estadual Paulista (UNESP)Université LavalFederal University of CearáCentro de Citricultura Sylvio MoreiraFederal University of Santa MariaYamane, Danilo Ricardo [UNESP]Parent, Serge-ÉtienneNatale, WilliamCecílio Filho, Arthur Bernardes [UNESP]Rozane, Danilo Eduardo [UNESP]Nowaki, Rodrigo Hiyoshi Dalmazzo [UNESP]Mattos Junior, Dirceu deParent, Léon Etienne2023-07-29T16:01:39Z2023-07-29T16:01:39Z2022-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/horticulturae8121126Horticulturae, v. 8, n. 12, 2022.2311-7524http://hdl.handle.net/11449/24951210.3390/horticulturae81211262-s2.0-85144905436Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengHorticulturaeinfo:eu-repo/semantics/openAccess2024-06-07T13:57:21Zoai:repositorio.unesp.br:11449/249512Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:03:56.221299Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Site-Specific Nutrient Diagnosis of Orange Groves
title Site-Specific Nutrient Diagnosis of Orange Groves
spellingShingle Site-Specific Nutrient Diagnosis of Orange Groves
Yamane, Danilo Ricardo [UNESP]
centered log ratio
local diagnosis
machine learning
nutrient balance
title_short Site-Specific Nutrient Diagnosis of Orange Groves
title_full Site-Specific Nutrient Diagnosis of Orange Groves
title_fullStr Site-Specific Nutrient Diagnosis of Orange Groves
title_full_unstemmed Site-Specific Nutrient Diagnosis of Orange Groves
title_sort Site-Specific Nutrient Diagnosis of Orange Groves
author Yamane, Danilo Ricardo [UNESP]
author_facet Yamane, Danilo Ricardo [UNESP]
Parent, Serge-Étienne
Natale, William
Cecílio Filho, Arthur Bernardes [UNESP]
Rozane, Danilo Eduardo [UNESP]
Nowaki, Rodrigo Hiyoshi Dalmazzo [UNESP]
Mattos Junior, Dirceu de
Parent, Léon Etienne
author_role author
author2 Parent, Serge-Étienne
Natale, William
Cecílio Filho, Arthur Bernardes [UNESP]
Rozane, Danilo Eduardo [UNESP]
Nowaki, Rodrigo Hiyoshi Dalmazzo [UNESP]
Mattos Junior, Dirceu de
Parent, Léon Etienne
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Université Laval
Federal University of Ceará
Centro de Citricultura Sylvio Moreira
Federal University of Santa Maria
dc.contributor.author.fl_str_mv Yamane, Danilo Ricardo [UNESP]
Parent, Serge-Étienne
Natale, William
Cecílio Filho, Arthur Bernardes [UNESP]
Rozane, Danilo Eduardo [UNESP]
Nowaki, Rodrigo Hiyoshi Dalmazzo [UNESP]
Mattos Junior, Dirceu de
Parent, Léon Etienne
dc.subject.por.fl_str_mv centered log ratio
local diagnosis
machine learning
nutrient balance
topic centered log ratio
local diagnosis
machine learning
nutrient balance
description Nutrient diagnosis of orange (Citrus sinensis) groves in Brazil relies on regional information from a limited number of studies transferred to other environments under the ceteris paribus assumption. Interpretation methods are based on crude nutrient compositions that are intrinsically biased by genetics X environment interactions. Our objective was to develop accurate and unbiased nutrient diagnosis of orange groves combining machine learning (ML) and compositional methods. Fruit yield and foliar nutrients were quantified in 551 rainfed 7–15-year-old orange groves of ‘Hamlin’, ‘Valência’, and ‘Pêra’ in the state of São Paulo, Brazil. The data set was further documented using soil classification, soil tests, and meteorological indices. Tissue compositions were log-ratio transformed to account for nutrient interactions. Ionomes differed among scions. Regression ML models showed evidence of overfitting. Binary ML classification models showed acceptable values of areas under the curve (>0.7). Regional standards delineating the multivariate elliptical hyperspace depended on the yield cutoff. A shapeless blob hyperspace was delineated using the k-nearest successful neighbors that showed comparable features and reported realistic yield goals. Regionally derived and site-specific reference compositions may lead to differential interpretation. Large-size and diversified data sets must be collected to inform ML models along the learning curve, tackle model overfitting, and evaluate the merit of blob-scale diagnosis.
publishDate 2022
dc.date.none.fl_str_mv 2022-12-01
2023-07-29T16:01:39Z
2023-07-29T16:01:39Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/horticulturae8121126
Horticulturae, v. 8, n. 12, 2022.
2311-7524
http://hdl.handle.net/11449/249512
10.3390/horticulturae8121126
2-s2.0-85144905436
url http://dx.doi.org/10.3390/horticulturae8121126
http://hdl.handle.net/11449/249512
identifier_str_mv Horticulturae, v. 8, n. 12, 2022.
2311-7524
10.3390/horticulturae8121126
2-s2.0-85144905436
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Horticulturae
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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