Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput

Detalhes bibliográficos
Autor(a) principal: Almeida, Ludimila Dias
Data de Publicação: 2021
Outros Autores: Silva, Ali Salim Faraj, Mota, Daniel Calixto, Vasconcelos, Adrielle Ayumi, Camargo, Antônio Pedro, Pires, Gabriel Silva, Furlan, Monique, Da Cunha Freire, Helena Martins Ribeiro, Klippel, Angélica Hollunder [UNESP], Silva, Suélen Fernandes [UNESP], Zanelli, Cleslei Fernando [UNESP], Carazzolle, Marcelo Falsarella, Oliver, Stephen G., Bilsland, Elizabeth
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1128/mbio.03221-21
http://hdl.handle.net/11449/231580
Resumo: The routes of uptake and efflux should be considered when developing new drugs so that they can effectively address their intracellular targets. As a general rule, drugs appear to enter cells via protein carriers that normally carry nutrients or metabolites. A previously developed pipeline that searched for drug transporters using Saccharomyces cerevisiae mutants carrying single-gene deletions identified import routes for most compounds tested. However, due to the redundancy of transporter functions, we propose that this methodology can be improved by utilizing double mutant strains in both low- and high-throughput screens. We constructed a library of over 14,000 strains harboring double deletions of genes encoding 122 nonessential plasma membrane transporters and performed low- and high-throughput screens identifying possible drug import routes for 23 compounds. In addition, the high-throughput assay enabled the identification of putative efflux routes for 21 compounds. Focusing on azole antifungals, we were able to identify the involvement of the myo-inositol transporter, Itr1p, in the uptake of these molecules and to confirm the role of Pdr5p in their export.
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spelling Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High ThroughputDrug effluxDrug transportDrug uptakeGenetic interactionsNonessential transporter double-deletion libraryPlasma membrane transporterSaccharomyces cerevisiaeXenobioticsYeastThe routes of uptake and efflux should be considered when developing new drugs so that they can effectively address their intracellular targets. As a general rule, drugs appear to enter cells via protein carriers that normally carry nutrients or metabolites. A previously developed pipeline that searched for drug transporters using Saccharomyces cerevisiae mutants carrying single-gene deletions identified import routes for most compounds tested. However, due to the redundancy of transporter functions, we propose that this methodology can be improved by utilizing double mutant strains in both low- and high-throughput screens. We constructed a library of over 14,000 strains harboring double deletions of genes encoding 122 nonessential plasma membrane transporters and performed low- and high-throughput screens identifying possible drug import routes for 23 compounds. In addition, the high-throughput assay enabled the identification of putative efflux routes for 21 compounds. Focusing on azole antifungals, we were able to identify the involvement of the myo-inositol transporter, Itr1p, in the uptake of these molecules and to confirm the role of Pdr5p in their export.Synthetic Biology Laboratory Department of Structural and Functional Biology Institute of Biology University of Campinas-UNICAMP, São PauloLaboratory of Genomics and BioEnergy Department of Genetics Evolution Microbiology and Immunology Institute of Biology University of Campinas-UNICAMP, São PauloSchool of Pharmaceutical Sciences São Paulo State University-UNESP, São PauloChemistry Institute São Paulo State University-UNESP, São PauloCambridge Systems Biology Centre University of CambridgeDepartment of Biochemistry University of CambridgeSchool of Pharmaceutical Sciences São Paulo State University-UNESP, São PauloChemistry Institute São Paulo State University-UNESP, São PauloUniversidade Estadual de Campinas (UNICAMP)Universidade Estadual Paulista (UNESP)University of CambridgeAlmeida, Ludimila DiasSilva, Ali Salim FarajMota, Daniel CalixtoVasconcelos, Adrielle AyumiCamargo, Antônio PedroPires, Gabriel SilvaFurlan, MoniqueDa Cunha Freire, Helena Martins RibeiroKlippel, Angélica Hollunder [UNESP]Silva, Suélen Fernandes [UNESP]Zanelli, Cleslei Fernando [UNESP]Carazzolle, Marcelo FalsarellaOliver, Stephen G.Bilsland, Elizabeth2022-04-29T08:46:14Z2022-04-29T08:46:14Z2021-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1128/mbio.03221-21mBio, v. 12, n. 6, 2021.2150-75112161-2129http://hdl.handle.net/11449/23158010.1128/mbio.03221-212-s2.0-85121978014Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengmBioinfo:eu-repo/semantics/openAccess2022-04-29T08:46:15Zoai:repositorio.unesp.br:11449/231580Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-29T08:46:15Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
title Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
spellingShingle Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
Almeida, Ludimila Dias
Drug efflux
Drug transport
Drug uptake
Genetic interactions
Nonessential transporter double-deletion library
Plasma membrane transporter
Saccharomyces cerevisiae
Xenobiotics
Yeast
title_short Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
title_full Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
title_fullStr Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
title_full_unstemmed Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
title_sort Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput
author Almeida, Ludimila Dias
author_facet Almeida, Ludimila Dias
Silva, Ali Salim Faraj
Mota, Daniel Calixto
Vasconcelos, Adrielle Ayumi
Camargo, Antônio Pedro
Pires, Gabriel Silva
Furlan, Monique
Da Cunha Freire, Helena Martins Ribeiro
Klippel, Angélica Hollunder [UNESP]
Silva, Suélen Fernandes [UNESP]
Zanelli, Cleslei Fernando [UNESP]
Carazzolle, Marcelo Falsarella
Oliver, Stephen G.
Bilsland, Elizabeth
author_role author
author2 Silva, Ali Salim Faraj
Mota, Daniel Calixto
Vasconcelos, Adrielle Ayumi
Camargo, Antônio Pedro
Pires, Gabriel Silva
Furlan, Monique
Da Cunha Freire, Helena Martins Ribeiro
Klippel, Angélica Hollunder [UNESP]
Silva, Suélen Fernandes [UNESP]
Zanelli, Cleslei Fernando [UNESP]
Carazzolle, Marcelo Falsarella
Oliver, Stephen G.
Bilsland, Elizabeth
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual de Campinas (UNICAMP)
Universidade Estadual Paulista (UNESP)
University of Cambridge
dc.contributor.author.fl_str_mv Almeida, Ludimila Dias
Silva, Ali Salim Faraj
Mota, Daniel Calixto
Vasconcelos, Adrielle Ayumi
Camargo, Antônio Pedro
Pires, Gabriel Silva
Furlan, Monique
Da Cunha Freire, Helena Martins Ribeiro
Klippel, Angélica Hollunder [UNESP]
Silva, Suélen Fernandes [UNESP]
Zanelli, Cleslei Fernando [UNESP]
Carazzolle, Marcelo Falsarella
Oliver, Stephen G.
Bilsland, Elizabeth
dc.subject.por.fl_str_mv Drug efflux
Drug transport
Drug uptake
Genetic interactions
Nonessential transporter double-deletion library
Plasma membrane transporter
Saccharomyces cerevisiae
Xenobiotics
Yeast
topic Drug efflux
Drug transport
Drug uptake
Genetic interactions
Nonessential transporter double-deletion library
Plasma membrane transporter
Saccharomyces cerevisiae
Xenobiotics
Yeast
description The routes of uptake and efflux should be considered when developing new drugs so that they can effectively address their intracellular targets. As a general rule, drugs appear to enter cells via protein carriers that normally carry nutrients or metabolites. A previously developed pipeline that searched for drug transporters using Saccharomyces cerevisiae mutants carrying single-gene deletions identified import routes for most compounds tested. However, due to the redundancy of transporter functions, we propose that this methodology can be improved by utilizing double mutant strains in both low- and high-throughput screens. We constructed a library of over 14,000 strains harboring double deletions of genes encoding 122 nonessential plasma membrane transporters and performed low- and high-throughput screens identifying possible drug import routes for 23 compounds. In addition, the high-throughput assay enabled the identification of putative efflux routes for 21 compounds. Focusing on azole antifungals, we were able to identify the involvement of the myo-inositol transporter, Itr1p, in the uptake of these molecules and to confirm the role of Pdr5p in their export.
publishDate 2021
dc.date.none.fl_str_mv 2021-12-01
2022-04-29T08:46:14Z
2022-04-29T08:46:14Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1128/mbio.03221-21
mBio, v. 12, n. 6, 2021.
2150-7511
2161-2129
http://hdl.handle.net/11449/231580
10.1128/mbio.03221-21
2-s2.0-85121978014
url http://dx.doi.org/10.1128/mbio.03221-21
http://hdl.handle.net/11449/231580
identifier_str_mv mBio, v. 12, n. 6, 2021.
2150-7511
2161-2129
10.1128/mbio.03221-21
2-s2.0-85121978014
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv mBio
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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