PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL

Detalhes bibliográficos
Autor(a) principal: Ferreira, Dennis da Silva
Data de Publicação: 2023
Outros Autores: Rodrigues, Leticia da Silva [UNESP], Pereira, Fabiola Manhas Verbi [UNESP], Pereira-Filho, Edenir Rodrigues
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.21577/0100-4042.20230030
http://hdl.handle.net/11449/245302
Resumo: PRINCIPAL COMPONENT ANALYSIS (PCA) FOR CHEMICAL DATA EVALUATION AND HEAT MAPS PREPARATION: A TUTORIAL. This tutorial shows a step-by-step guide on handling big datasets using principal component analysis (PCA). A dataset of chemical elements' concentration, emission spectrum, and energy-dispersive X-ray fluorescence (EDXRF) of e-waste were used as examples. Five routines were proposed to apply data processing and PCA calculation focusing data from laser-induced breakdown spectroscopy (LIBS), EDXRF, and heat maps preparation. These routines can be used in various softwares such as MatLab, Octave, R, and Python. PCA was applied in three examples; the first was for concentrations, and the other two were for spectra. An example of heat maps assembling a hyperspectral image of a printed circuit was also described. In addition, a playlist was created on YouTube using the available examples. Therefore, with this tutorial, it may be possible to learn how to deal with a large volume of data by applying PCA. The authors hope to contribute to those researching in the area.
id UNSP_9ceab09a95497304fcf14c7056d60df5
oai_identifier_str oai:repositorio.unesp.br:11449/245302
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIALexploratory analysisdata miningdata visualizationdirect solid sample analysislaserX-ray fluorescencePRINCIPAL COMPONENT ANALYSIS (PCA) FOR CHEMICAL DATA EVALUATION AND HEAT MAPS PREPARATION: A TUTORIAL. This tutorial shows a step-by-step guide on handling big datasets using principal component analysis (PCA). A dataset of chemical elements' concentration, emission spectrum, and energy-dispersive X-ray fluorescence (EDXRF) of e-waste were used as examples. Five routines were proposed to apply data processing and PCA calculation focusing data from laser-induced breakdown spectroscopy (LIBS), EDXRF, and heat maps preparation. These routines can be used in various softwares such as MatLab, Octave, R, and Python. PCA was applied in three examples; the first was for concentrations, and the other two were for spectra. An example of heat maps assembling a hyperspectral image of a printed circuit was also described. In addition, a playlist was created on YouTube using the available examples. Therefore, with this tutorial, it may be possible to learn how to deal with a large volume of data by applying PCA. The authors hope to contribute to those researching in the area.Univ Fed Sao Carlos, Dept Quim, BR-13565905 Sao Carlos, SP, BrazilUniv Estadual Paulista, Inst Quim, BR-14800060 Araraquara, SP, BrazilUniv Estadual Paulista, Inst Quim, BR-14800060 Araraquara, SP, BrazilSoc Brasileira QuimicaUniversidade Federal de São Carlos (UFSCar)Universidade Estadual Paulista (UNESP)Ferreira, Dennis da SilvaRodrigues, Leticia da Silva [UNESP]Pereira, Fabiola Manhas Verbi [UNESP]Pereira-Filho, Edenir Rodrigues2023-07-29T11:50:59Z2023-07-29T11:50:59Z2023-03-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article8http://dx.doi.org/10.21577/0100-4042.20230030Quimica Nova. Sao Paulo: Soc Brasileira Quimica, 8 p., 2023.0100-4042http://hdl.handle.net/11449/24530210.21577/0100-4042.20230030WOS:000991897600001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengQuimica Novainfo:eu-repo/semantics/openAccess2023-07-29T11:50:59Zoai:repositorio.unesp.br:11449/245302Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:17:39.676208Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
title PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
spellingShingle PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
Ferreira, Dennis da Silva
exploratory analysis
data mining
data visualization
direct solid sample analysis
laser
X-ray fluorescence
title_short PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
title_full PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
title_fullStr PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
title_full_unstemmed PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
title_sort PRINCIPAL COMPONENT ANALYSIS (PCA) PARA a AVALIAcAO DE DADOS QUiMICOS E GERAcAO DE HEAT MAPS: UM TUTORIAL
author Ferreira, Dennis da Silva
author_facet Ferreira, Dennis da Silva
Rodrigues, Leticia da Silva [UNESP]
Pereira, Fabiola Manhas Verbi [UNESP]
Pereira-Filho, Edenir Rodrigues
author_role author
author2 Rodrigues, Leticia da Silva [UNESP]
Pereira, Fabiola Manhas Verbi [UNESP]
Pereira-Filho, Edenir Rodrigues
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de São Carlos (UFSCar)
Universidade Estadual Paulista (UNESP)
dc.contributor.author.fl_str_mv Ferreira, Dennis da Silva
Rodrigues, Leticia da Silva [UNESP]
Pereira, Fabiola Manhas Verbi [UNESP]
Pereira-Filho, Edenir Rodrigues
dc.subject.por.fl_str_mv exploratory analysis
data mining
data visualization
direct solid sample analysis
laser
X-ray fluorescence
topic exploratory analysis
data mining
data visualization
direct solid sample analysis
laser
X-ray fluorescence
description PRINCIPAL COMPONENT ANALYSIS (PCA) FOR CHEMICAL DATA EVALUATION AND HEAT MAPS PREPARATION: A TUTORIAL. This tutorial shows a step-by-step guide on handling big datasets using principal component analysis (PCA). A dataset of chemical elements' concentration, emission spectrum, and energy-dispersive X-ray fluorescence (EDXRF) of e-waste were used as examples. Five routines were proposed to apply data processing and PCA calculation focusing data from laser-induced breakdown spectroscopy (LIBS), EDXRF, and heat maps preparation. These routines can be used in various softwares such as MatLab, Octave, R, and Python. PCA was applied in three examples; the first was for concentrations, and the other two were for spectra. An example of heat maps assembling a hyperspectral image of a printed circuit was also described. In addition, a playlist was created on YouTube using the available examples. Therefore, with this tutorial, it may be possible to learn how to deal with a large volume of data by applying PCA. The authors hope to contribute to those researching in the area.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T11:50:59Z
2023-07-29T11:50:59Z
2023-03-08
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.21577/0100-4042.20230030
Quimica Nova. Sao Paulo: Soc Brasileira Quimica, 8 p., 2023.
0100-4042
http://hdl.handle.net/11449/245302
10.21577/0100-4042.20230030
WOS:000991897600001
url http://dx.doi.org/10.21577/0100-4042.20230030
http://hdl.handle.net/11449/245302
identifier_str_mv Quimica Nova. Sao Paulo: Soc Brasileira Quimica, 8 p., 2023.
0100-4042
10.21577/0100-4042.20230030
WOS:000991897600001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Quimica Nova
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 8
dc.publisher.none.fl_str_mv Soc Brasileira Quimica
publisher.none.fl_str_mv Soc Brasileira Quimica
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1808128786008375296