Development and comparative analysis of yeast protein extraction protocols for mass spectrometry
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.ab.2018.10.028 http://hdl.handle.net/11449/188534 |
Resumo: | Mass spectrometry is the most used method for protein identification and quantification. Here we developed four protein extraction protocols precisely for mass spectrometry, and we compared with other ones already published. The best protocol developed by us consists on a simple extraction solution, a heat-shock step, and does not use protease inhibitor; moreover, it is the most efficient and uniform among replicates, besides to be safe, cheap and fast. That method also provided the highest number of proteins uniquely identified and allows finding a diversity of protein classes, which their absence is a problem to be avoided. |
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Repositório Institucional da UNESP |
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Development and comparative analysis of yeast protein extraction protocols for mass spectrometryProtein extraction protocolProteomicsProtocol comparisonsSaccharomyces cerevisiae proteinsMass spectrometry is the most used method for protein identification and quantification. Here we developed four protein extraction protocols precisely for mass spectrometry, and we compared with other ones already published. The best protocol developed by us consists on a simple extraction solution, a heat-shock step, and does not use protease inhibitor; moreover, it is the most efficient and uniform among replicates, besides to be safe, cheap and fast. That method also provided the highest number of proteins uniquely identified and allows finding a diversity of protein classes, which their absence is a problem to be avoided.Universidade Estadual PaulistaFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Sao Paulo State University (UNESP) Department of Bioprocess and Biotechnology School of Agriculture, Avenue Universitária, n 3780, Altos do ParaísoSao Paulo State University (UNESP) Center for the Study of Venoms and Venomous Animals (CEVAP), Avenue Universitária, n 3780, Altos do ParaísoSão Paulo State University (UNESP) Graduate Program in Tropical Diseases, Botucatu Medical School (FMB). Avenue Prof. Mário Rubens Guimarães Montenegro, no number, Rubião JrSao Paulo State University (UNESP) Department of Bioprocess and Biotechnology School of Agriculture, Avenue Universitária, n 3780, Altos do ParaísoSao Paulo State University (UNESP) Center for the Study of Venoms and Venomous Animals (CEVAP), Avenue Universitária, n 3780, Altos do ParaísoSão Paulo State University (UNESP) Graduate Program in Tropical Diseases, Botucatu Medical School (FMB). Avenue Prof. Mário Rubens Guimarães Montenegro, no number, Rubião JrUniversidade Estadual Paulista: 12/2015-PROPeFAPESP: 2015/12093-9Universidade Estadual Paulista (Unesp)Almeida, Lauana Fogaça de [UNESP]Moraes, Leonardo Nazário de [UNESP]Santos, Lucilene Delazari dos [UNESP]Valente, Guilherme Targino [UNESP]2019-10-06T16:11:18Z2019-10-06T16:11:18Z2019-02-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article90-95http://dx.doi.org/10.1016/j.ab.2018.10.028Analytical Biochemistry, v. 567, p. 90-95.1096-03090003-2697http://hdl.handle.net/11449/18853410.1016/j.ab.2018.10.0282-s2.0-850589395173368404126695911Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengAnalytical Biochemistryinfo:eu-repo/semantics/openAccess2024-08-15T15:23:14Zoai:repositorio.unesp.br:11449/188534Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-15T15:23:14Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry |
title |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry |
spellingShingle |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry Almeida, Lauana Fogaça de [UNESP] Protein extraction protocol Proteomics Protocol comparisons Saccharomyces cerevisiae proteins |
title_short |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry |
title_full |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry |
title_fullStr |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry |
title_full_unstemmed |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry |
title_sort |
Development and comparative analysis of yeast protein extraction protocols for mass spectrometry |
author |
Almeida, Lauana Fogaça de [UNESP] |
author_facet |
Almeida, Lauana Fogaça de [UNESP] Moraes, Leonardo Nazário de [UNESP] Santos, Lucilene Delazari dos [UNESP] Valente, Guilherme Targino [UNESP] |
author_role |
author |
author2 |
Moraes, Leonardo Nazário de [UNESP] Santos, Lucilene Delazari dos [UNESP] Valente, Guilherme Targino [UNESP] |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Almeida, Lauana Fogaça de [UNESP] Moraes, Leonardo Nazário de [UNESP] Santos, Lucilene Delazari dos [UNESP] Valente, Guilherme Targino [UNESP] |
dc.subject.por.fl_str_mv |
Protein extraction protocol Proteomics Protocol comparisons Saccharomyces cerevisiae proteins |
topic |
Protein extraction protocol Proteomics Protocol comparisons Saccharomyces cerevisiae proteins |
description |
Mass spectrometry is the most used method for protein identification and quantification. Here we developed four protein extraction protocols precisely for mass spectrometry, and we compared with other ones already published. The best protocol developed by us consists on a simple extraction solution, a heat-shock step, and does not use protease inhibitor; moreover, it is the most efficient and uniform among replicates, besides to be safe, cheap and fast. That method also provided the highest number of proteins uniquely identified and allows finding a diversity of protein classes, which their absence is a problem to be avoided. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-10-06T16:11:18Z 2019-10-06T16:11:18Z 2019-02-15 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.ab.2018.10.028 Analytical Biochemistry, v. 567, p. 90-95. 1096-0309 0003-2697 http://hdl.handle.net/11449/188534 10.1016/j.ab.2018.10.028 2-s2.0-85058939517 3368404126695911 |
url |
http://dx.doi.org/10.1016/j.ab.2018.10.028 http://hdl.handle.net/11449/188534 |
identifier_str_mv |
Analytical Biochemistry, v. 567, p. 90-95. 1096-0309 0003-2697 10.1016/j.ab.2018.10.028 2-s2.0-85058939517 3368404126695911 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Analytical Biochemistry |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
90-95 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128182915694592 |