Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability

Detalhes bibliográficos
Autor(a) principal: Pie, Marcio R.
Data de Publicação: 2018
Outros Autores: Faircloth, Brant C., Ribeiro, Luiz F., Bornschein, Marcos R. [UNESP], McCormack, John E.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1101/226159
http://hdl.handle.net/11449/221282
Resumo: Despite encompassing a relatively small geographical area, montane regions harbour disproportionately high levels of species diversity and endemism. Nonetheless, relatively little is known about the evolutionary mechanisms that ultimately lead to montane diversity. In this study, we used target capture of ultraconserved elements to investigate the phylogenetic relationships and diversification patterns of Melanophryniscus (Bufonidae) and Brachycephalus (Brachycephalidae), two frog genera that occur in sky islands of the southern Atlantic Forest of Brazil. Specifically, we tested whether diversification of montane species in these genera could be explained by a single climatic shift leading to isolation in sky islands, followed by climatic stability that maintained populations in allopatry. In both genera, the topologies inferred using concatenation and coalescent-based methods were concordant and had strong nodal support, except for a few recent splits, which nevertheless tended to be supported by more informative loci. Estimation of divergence time of a combined dataset using both genera is consistent with a concordant timing of their diversification. These results support the scenario of diversification by isolation in sky islands and suggest that allopatry attributable to climatic gradients in montane regions is an important mechanism for generating species diversity and endemism in these regions.
id UNSP_a94cca99a162957f79ab4bb5ffa34e90
oai_identifier_str oai:repositorio.unesp.br:11449/221282
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stabilityBrachycephalusCoalescentMelanophryniscusTarget enrichmentUltraconserved elementsDespite encompassing a relatively small geographical area, montane regions harbour disproportionately high levels of species diversity and endemism. Nonetheless, relatively little is known about the evolutionary mechanisms that ultimately lead to montane diversity. In this study, we used target capture of ultraconserved elements to investigate the phylogenetic relationships and diversification patterns of Melanophryniscus (Bufonidae) and Brachycephalus (Brachycephalidae), two frog genera that occur in sky islands of the southern Atlantic Forest of Brazil. Specifically, we tested whether diversification of montane species in these genera could be explained by a single climatic shift leading to isolation in sky islands, followed by climatic stability that maintained populations in allopatry. In both genera, the topologies inferred using concatenation and coalescent-based methods were concordant and had strong nodal support, except for a few recent splits, which nevertheless tended to be supported by more informative loci. Estimation of divergence time of a combined dataset using both genera is consistent with a concordant timing of their diversification. These results support the scenario of diversification by isolation in sky islands and suggest that allopatry attributable to climatic gradients in montane regions is an important mechanism for generating species diversity and endemism in these regions.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Ministério da Ciência e TecnologiaFundação Grupo Boticário de Proteção à NaturezaDepartamento de Zoologia Universidade Federal do ParanáMater Natura – Instituto de Estudos AmbientaisDepartment of Biological Sciences and Museum of Natural Science Louisiana State UniversityEscola de Ciências da Vida Pontifícia Universidade Católica do ParanáInstituto de Biociências Universidade Estadual PaulistaMoore Laboratory of Zoology Occidental CollegeInstituto de Biociências Universidade Estadual PaulistaMinistério da Ciência e Tecnologia: 301636/2016-8Fundação Grupo Boticário de Proteção à Natureza: A0010_2014Universidade Federal do Paraná (UFPR)Mater Natura – Instituto de Estudos AmbientaisLouisiana State UniversityPontifícia Universidade Católica do ParanáUniversidade Estadual Paulista (UNESP)Occidental CollegePie, Marcio R.Faircloth, Brant C.Ribeiro, Luiz F.Bornschein, Marcos R. [UNESP]McCormack, John E.2022-04-28T19:27:07Z2022-04-28T19:27:07Z2018-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article72-82http://dx.doi.org/10.1101/226159Biological Journal of the Linnean Society, v. 125, n. 1, p. 72-82, 2018.1095-83120024-4066http://hdl.handle.net/11449/22128210.1101/2261592-s2.0-85064177710Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBiological Journal of the Linnean Societyinfo:eu-repo/semantics/openAccess2022-04-28T19:27:07Zoai:repositorio.unesp.br:11449/221282Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:52:13.689064Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
title Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
spellingShingle Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
Pie, Marcio R.
Brachycephalus
Coalescent
Melanophryniscus
Target enrichment
Ultraconserved elements
title_short Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
title_full Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
title_fullStr Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
title_full_unstemmed Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
title_sort Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
author Pie, Marcio R.
author_facet Pie, Marcio R.
Faircloth, Brant C.
Ribeiro, Luiz F.
Bornschein, Marcos R. [UNESP]
McCormack, John E.
author_role author
author2 Faircloth, Brant C.
Ribeiro, Luiz F.
Bornschein, Marcos R. [UNESP]
McCormack, John E.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do Paraná (UFPR)
Mater Natura – Instituto de Estudos Ambientais
Louisiana State University
Pontifícia Universidade Católica do Paraná
Universidade Estadual Paulista (UNESP)
Occidental College
dc.contributor.author.fl_str_mv Pie, Marcio R.
Faircloth, Brant C.
Ribeiro, Luiz F.
Bornschein, Marcos R. [UNESP]
McCormack, John E.
dc.subject.por.fl_str_mv Brachycephalus
Coalescent
Melanophryniscus
Target enrichment
Ultraconserved elements
topic Brachycephalus
Coalescent
Melanophryniscus
Target enrichment
Ultraconserved elements
description Despite encompassing a relatively small geographical area, montane regions harbour disproportionately high levels of species diversity and endemism. Nonetheless, relatively little is known about the evolutionary mechanisms that ultimately lead to montane diversity. In this study, we used target capture of ultraconserved elements to investigate the phylogenetic relationships and diversification patterns of Melanophryniscus (Bufonidae) and Brachycephalus (Brachycephalidae), two frog genera that occur in sky islands of the southern Atlantic Forest of Brazil. Specifically, we tested whether diversification of montane species in these genera could be explained by a single climatic shift leading to isolation in sky islands, followed by climatic stability that maintained populations in allopatry. In both genera, the topologies inferred using concatenation and coalescent-based methods were concordant and had strong nodal support, except for a few recent splits, which nevertheless tended to be supported by more informative loci. Estimation of divergence time of a combined dataset using both genera is consistent with a concordant timing of their diversification. These results support the scenario of diversification by isolation in sky islands and suggest that allopatry attributable to climatic gradients in montane regions is an important mechanism for generating species diversity and endemism in these regions.
publishDate 2018
dc.date.none.fl_str_mv 2018-01-01
2022-04-28T19:27:07Z
2022-04-28T19:27:07Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1101/226159
Biological Journal of the Linnean Society, v. 125, n. 1, p. 72-82, 2018.
1095-8312
0024-4066
http://hdl.handle.net/11449/221282
10.1101/226159
2-s2.0-85064177710
url http://dx.doi.org/10.1101/226159
http://hdl.handle.net/11449/221282
identifier_str_mv Biological Journal of the Linnean Society, v. 125, n. 1, p. 72-82, 2018.
1095-8312
0024-4066
10.1101/226159
2-s2.0-85064177710
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Biological Journal of the Linnean Society
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 72-82
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1808129132256559104