The Mode of Action of Recombinant Mycobacterium tuberculosis Shikimate Kinase: Kinetics and Thermodynamics Analyses

• Autor(a) principal: Rosado, Leonardo Astolfi
• Data de Publicação: 2013
• Outros Autores: Vasconcelos, Igor Bordin, Palma, Mario Sergio [UNESP], Frappier, Vincent, Najmanovich, Rafael Josef, Santos, Diógenes Santiago, Basso, Luiz Augusto
• Tipo de documento: Artigo
• Idioma: eng
• Título da fonte: Repositório Institucional da UNESP
• Texto Completo: http://dx.doi.org/10.1371/journal.pone.0061918; http://hdl.handle.net/11449/75353
• topic: adenosine triphosphate; amino acid; oligomer; recombinant enzyme; recombinant shikimate kinase; unclassified drug; amino terminal sequence; binding affinity; biochemistry; biophysics; catalysis; chemical reaction; complex formation; constant pressure heat capacity; controlled study; covalent bond; dissociation constant; enzyme activity; enzyme kinetics; enzyme purification; enzyme structure; enzyme substrate complex; fluorescence spectroscopy; hydrophobicity; isothermal titration calorimetry; ligand binding; molecular interaction; Mycobacterium tuberculosis; nonhuman; physical parameters; proton transport; sequence homology; solvation; steady state; thermodynamics; vibration

Tuberculosis remains as one of the main cause of mortality worldwide due to a single infectious agent, Mycobacterium tuberculosis. The aroK-encoded M. tuberculosis Shikimate Kinase (MtSK), shown to be essential for survival of bacilli, catalyzes the phosphoryl transfer from ATP to the carbon-3 hydroxyl group of shikimate (SKH), yielding shikimate-3-phosphate and ADP. Here we present purification to homogeneity, and oligomeric state determination of recombinant MtSK. Biochemical and biophysical data suggest that the chemical reaction catalyzed by monomeric MtSK follows a rapid-equilibrium random order of substrate binding, and ordered product release. Isothermal titration calorimetry (ITC) for binding of ligands to MtSK provided thermodynamic signatures of non-covalent interactions to each process. A comparison of steady-state kinetics parameters and equilibrium dissociation constant value determined by ITC showed that ATP binding does not increase the affinity of MtSK for SKH. We suggest that MtSK would more appropriately be described as an aroL-encoded type II shikimate kinase. Our manuscript also gives thermodynamic description of SKH binding to MtSK and data for the number of protons exchanged during this bimolecular interaction. The negative value for the change in constant pressure heat capacity (ΔCp) and molecular homology model building suggest a pronounced contribution of desolvation of non-polar groups upon binary complex formation. Thermodynamic parameters were deconvoluted into hydrophobic and vibrational contributions upon MtSK:SKH binary complex formation. Data for the number of protons exchanged during this bimolecular interaction are interpreted in light of a structural model to try to propose the likely amino acid side chains that are the proton donors to bulk solvent following MtSK:SKH complex formation. © 2013 Rosado et al.