Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways

Detalhes bibliográficos
Autor(a) principal: Souza, Cristiano P. [UNESP]
Data de Publicação: 2020
Outros Autores: Cinegaglia, Naiara C. [UNESP], Felix, Tainara F. [UNESP], Evangelista, Adriane F., Oliveira, Rogério A. [UNESP], Hasimoto, Erica N. [UNESP], Cataneo, Daniele C. [UNESP], Cataneo, Antônio J. M. [UNESP], Neto, Cristovam Scapulatempo, Viana, Cristiano R., de Paula, Flávia E., Drigo, Sandra A. [UNESP], Carvalho, Robson F. [UNESP], Marques, Márcia M. C., Reis, Rui M., Reis, Patricia P. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/cancers12092711
http://hdl.handle.net/11449/206573
Resumo: (1) Background: Although the advances in diagnostic and treatment strategies, lung cancer remains the leading cause of cancer-related deaths, worldwide, with survival rates as low as 16% in developed countries. Low survival rates are mainly due to late diagnosis and the lack of effective treatment. Therefore, the identification of novel, clinically useful biomarkers is still needed for patients with advanced disease stage and poor survival. Micro(mi)RNAs are non-coding RNAs and potent regulators of gene expression with a possible role as diagnostic, prognostic and predictive biomarkers in cancer. (2) Methods: We applied global miRNA expression profiling analysis using TaqMan® arrays in paired tumor and normal lung tissues (n = 38) from treatment-naïve patients with lung adenocarcinoma (AD; n = 23) and lung squamous cell carcinoma (SCC; n = 15). miRNA target genes were validated using The Cancer Genome Atlas (TCGA) lung AD (n = 561) and lung SCC (n = 523) RNA-Seq datasets. (3) Results: We identified 33 significantly deregulated miRNAs (fold change, FC ≥ 2.0 and p < 0.05) in tumors relative to normal lung tissues, regardless of tumor histology. Enrichment analysis confirmed that genes targeted by the 33 miRNAs are aberrantly expressed in lung AD and SCC, and modulate known pathways in lung cancer. Additionally, high expression of miR-25-3p was significantly associated (p < 0.05) with poor patient survival, when considering both tumor histologies. (4) Conclusions: miR-25-3p may be a potential prognostic biomarker in non-small cell lung cancer. Genes targeted by miRNAs regulate EGFR and TGFβ signaling, among other known pathways relevant to lung tumorigenesis.
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spelling Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathwaysLung cancerMicroRNAsPathwaysSurvivalTarget genes(1) Background: Although the advances in diagnostic and treatment strategies, lung cancer remains the leading cause of cancer-related deaths, worldwide, with survival rates as low as 16% in developed countries. Low survival rates are mainly due to late diagnosis and the lack of effective treatment. Therefore, the identification of novel, clinically useful biomarkers is still needed for patients with advanced disease stage and poor survival. Micro(mi)RNAs are non-coding RNAs and potent regulators of gene expression with a possible role as diagnostic, prognostic and predictive biomarkers in cancer. (2) Methods: We applied global miRNA expression profiling analysis using TaqMan® arrays in paired tumor and normal lung tissues (n = 38) from treatment-naïve patients with lung adenocarcinoma (AD; n = 23) and lung squamous cell carcinoma (SCC; n = 15). miRNA target genes were validated using The Cancer Genome Atlas (TCGA) lung AD (n = 561) and lung SCC (n = 523) RNA-Seq datasets. (3) Results: We identified 33 significantly deregulated miRNAs (fold change, FC ≥ 2.0 and p < 0.05) in tumors relative to normal lung tissues, regardless of tumor histology. Enrichment analysis confirmed that genes targeted by the 33 miRNAs are aberrantly expressed in lung AD and SCC, and modulate known pathways in lung cancer. Additionally, high expression of miR-25-3p was significantly associated (p < 0.05) with poor patient survival, when considering both tumor histologies. (4) Conclusions: miR-25-3p may be a potential prognostic biomarker in non-small cell lung cancer. Genes targeted by miRNAs regulate EGFR and TGFβ signaling, among other known pathways relevant to lung tumorigenesis.Financiadora de Estudos e ProjetosDepartment of Surgery and Orthopedics Faculty of Medicine São Paulo State University UNESPExperimental Research Unity (UNIPEX) São Paulo State University UNESPMolecular Oncology Research Center Barretos Cancer HospitalDepartment of Biostatistics Plant Biology Parasitology and Zoology Institute of Biosciences São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPBarretos School of Health SciencesLife and Health Sciences Research Institute (ICVS) School of Medicine University of MinhoICVS/3B’s-PT Government Associate LaboratoryDepartment of Surgery and Orthopedics Faculty of Medicine São Paulo State University UNESPExperimental Research Unity (UNIPEX) São Paulo State University UNESPDepartment of Biostatistics Plant Biology Parasitology and Zoology Institute of Biosciences São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPFinanciadora de Estudos e Projetos: 02/2010Universidade Estadual Paulista (Unesp)Barretos Cancer HospitalBarretos School of Health SciencesUniversity of MinhoICVS/3B’s-PT Government Associate LaboratorySouza, Cristiano P. [UNESP]Cinegaglia, Naiara C. [UNESP]Felix, Tainara F. [UNESP]Evangelista, Adriane F.Oliveira, Rogério A. [UNESP]Hasimoto, Erica N. [UNESP]Cataneo, Daniele C. [UNESP]Cataneo, Antônio J. M. [UNESP]Neto, Cristovam ScapulatempoViana, Cristiano R.de Paula, Flávia E.Drigo, Sandra A. [UNESP]Carvalho, Robson F. [UNESP]Marques, Márcia M. C.Reis, Rui M.Reis, Patricia P. [UNESP]2021-06-25T10:34:31Z2021-06-25T10:34:31Z2020-09-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-13http://dx.doi.org/10.3390/cancers12092711Cancers, v. 12, n. 9, p. 1-13, 2020.2072-6694http://hdl.handle.net/11449/20657310.3390/cancers120927112-s2.0-85091660791Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengCancersinfo:eu-repo/semantics/openAccess2021-10-23T07:34:14Zoai:repositorio.unesp.br:11449/206573Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T07:34:14Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
title Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
spellingShingle Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
Souza, Cristiano P. [UNESP]
Lung cancer
MicroRNAs
Pathways
Survival
Target genes
title_short Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
title_full Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
title_fullStr Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
title_full_unstemmed Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
title_sort Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
author Souza, Cristiano P. [UNESP]
author_facet Souza, Cristiano P. [UNESP]
Cinegaglia, Naiara C. [UNESP]
Felix, Tainara F. [UNESP]
Evangelista, Adriane F.
Oliveira, Rogério A. [UNESP]
Hasimoto, Erica N. [UNESP]
Cataneo, Daniele C. [UNESP]
Cataneo, Antônio J. M. [UNESP]
Neto, Cristovam Scapulatempo
Viana, Cristiano R.
de Paula, Flávia E.
Drigo, Sandra A. [UNESP]
Carvalho, Robson F. [UNESP]
Marques, Márcia M. C.
Reis, Rui M.
Reis, Patricia P. [UNESP]
author_role author
author2 Cinegaglia, Naiara C. [UNESP]
Felix, Tainara F. [UNESP]
Evangelista, Adriane F.
Oliveira, Rogério A. [UNESP]
Hasimoto, Erica N. [UNESP]
Cataneo, Daniele C. [UNESP]
Cataneo, Antônio J. M. [UNESP]
Neto, Cristovam Scapulatempo
Viana, Cristiano R.
de Paula, Flávia E.
Drigo, Sandra A. [UNESP]
Carvalho, Robson F. [UNESP]
Marques, Márcia M. C.
Reis, Rui M.
Reis, Patricia P. [UNESP]
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Barretos Cancer Hospital
Barretos School of Health Sciences
University of Minho
ICVS/3B’s-PT Government Associate Laboratory
dc.contributor.author.fl_str_mv Souza, Cristiano P. [UNESP]
Cinegaglia, Naiara C. [UNESP]
Felix, Tainara F. [UNESP]
Evangelista, Adriane F.
Oliveira, Rogério A. [UNESP]
Hasimoto, Erica N. [UNESP]
Cataneo, Daniele C. [UNESP]
Cataneo, Antônio J. M. [UNESP]
Neto, Cristovam Scapulatempo
Viana, Cristiano R.
de Paula, Flávia E.
Drigo, Sandra A. [UNESP]
Carvalho, Robson F. [UNESP]
Marques, Márcia M. C.
Reis, Rui M.
Reis, Patricia P. [UNESP]
dc.subject.por.fl_str_mv Lung cancer
MicroRNAs
Pathways
Survival
Target genes
topic Lung cancer
MicroRNAs
Pathways
Survival
Target genes
description (1) Background: Although the advances in diagnostic and treatment strategies, lung cancer remains the leading cause of cancer-related deaths, worldwide, with survival rates as low as 16% in developed countries. Low survival rates are mainly due to late diagnosis and the lack of effective treatment. Therefore, the identification of novel, clinically useful biomarkers is still needed for patients with advanced disease stage and poor survival. Micro(mi)RNAs are non-coding RNAs and potent regulators of gene expression with a possible role as diagnostic, prognostic and predictive biomarkers in cancer. (2) Methods: We applied global miRNA expression profiling analysis using TaqMan® arrays in paired tumor and normal lung tissues (n = 38) from treatment-naïve patients with lung adenocarcinoma (AD; n = 23) and lung squamous cell carcinoma (SCC; n = 15). miRNA target genes were validated using The Cancer Genome Atlas (TCGA) lung AD (n = 561) and lung SCC (n = 523) RNA-Seq datasets. (3) Results: We identified 33 significantly deregulated miRNAs (fold change, FC ≥ 2.0 and p < 0.05) in tumors relative to normal lung tissues, regardless of tumor histology. Enrichment analysis confirmed that genes targeted by the 33 miRNAs are aberrantly expressed in lung AD and SCC, and modulate known pathways in lung cancer. Additionally, high expression of miR-25-3p was significantly associated (p < 0.05) with poor patient survival, when considering both tumor histologies. (4) Conclusions: miR-25-3p may be a potential prognostic biomarker in non-small cell lung cancer. Genes targeted by miRNAs regulate EGFR and TGFβ signaling, among other known pathways relevant to lung tumorigenesis.
publishDate 2020
dc.date.none.fl_str_mv 2020-09-01
2021-06-25T10:34:31Z
2021-06-25T10:34:31Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/cancers12092711
Cancers, v. 12, n. 9, p. 1-13, 2020.
2072-6694
http://hdl.handle.net/11449/206573
10.3390/cancers12092711
2-s2.0-85091660791
url http://dx.doi.org/10.3390/cancers12092711
http://hdl.handle.net/11449/206573
identifier_str_mv Cancers, v. 12, n. 9, p. 1-13, 2020.
2072-6694
10.3390/cancers12092711
2-s2.0-85091660791
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Cancers
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1-13
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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