Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3390/cancers12092711 http://hdl.handle.net/11449/206573 |
Resumo: | (1) Background: Although the advances in diagnostic and treatment strategies, lung cancer remains the leading cause of cancer-related deaths, worldwide, with survival rates as low as 16% in developed countries. Low survival rates are mainly due to late diagnosis and the lack of effective treatment. Therefore, the identification of novel, clinically useful biomarkers is still needed for patients with advanced disease stage and poor survival. Micro(mi)RNAs are non-coding RNAs and potent regulators of gene expression with a possible role as diagnostic, prognostic and predictive biomarkers in cancer. (2) Methods: We applied global miRNA expression profiling analysis using TaqMan® arrays in paired tumor and normal lung tissues (n = 38) from treatment-naïve patients with lung adenocarcinoma (AD; n = 23) and lung squamous cell carcinoma (SCC; n = 15). miRNA target genes were validated using The Cancer Genome Atlas (TCGA) lung AD (n = 561) and lung SCC (n = 523) RNA-Seq datasets. (3) Results: We identified 33 significantly deregulated miRNAs (fold change, FC ≥ 2.0 and p < 0.05) in tumors relative to normal lung tissues, regardless of tumor histology. Enrichment analysis confirmed that genes targeted by the 33 miRNAs are aberrantly expressed in lung AD and SCC, and modulate known pathways in lung cancer. Additionally, high expression of miR-25-3p was significantly associated (p < 0.05) with poor patient survival, when considering both tumor histologies. (4) Conclusions: miR-25-3p may be a potential prognostic biomarker in non-small cell lung cancer. Genes targeted by miRNAs regulate EGFR and TGFβ signaling, among other known pathways relevant to lung tumorigenesis. |
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Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathwaysLung cancerMicroRNAsPathwaysSurvivalTarget genes(1) Background: Although the advances in diagnostic and treatment strategies, lung cancer remains the leading cause of cancer-related deaths, worldwide, with survival rates as low as 16% in developed countries. Low survival rates are mainly due to late diagnosis and the lack of effective treatment. Therefore, the identification of novel, clinically useful biomarkers is still needed for patients with advanced disease stage and poor survival. Micro(mi)RNAs are non-coding RNAs and potent regulators of gene expression with a possible role as diagnostic, prognostic and predictive biomarkers in cancer. (2) Methods: We applied global miRNA expression profiling analysis using TaqMan® arrays in paired tumor and normal lung tissues (n = 38) from treatment-naïve patients with lung adenocarcinoma (AD; n = 23) and lung squamous cell carcinoma (SCC; n = 15). miRNA target genes were validated using The Cancer Genome Atlas (TCGA) lung AD (n = 561) and lung SCC (n = 523) RNA-Seq datasets. (3) Results: We identified 33 significantly deregulated miRNAs (fold change, FC ≥ 2.0 and p < 0.05) in tumors relative to normal lung tissues, regardless of tumor histology. Enrichment analysis confirmed that genes targeted by the 33 miRNAs are aberrantly expressed in lung AD and SCC, and modulate known pathways in lung cancer. Additionally, high expression of miR-25-3p was significantly associated (p < 0.05) with poor patient survival, when considering both tumor histologies. (4) Conclusions: miR-25-3p may be a potential prognostic biomarker in non-small cell lung cancer. Genes targeted by miRNAs regulate EGFR and TGFβ signaling, among other known pathways relevant to lung tumorigenesis.Financiadora de Estudos e ProjetosDepartment of Surgery and Orthopedics Faculty of Medicine São Paulo State University UNESPExperimental Research Unity (UNIPEX) São Paulo State University UNESPMolecular Oncology Research Center Barretos Cancer HospitalDepartment of Biostatistics Plant Biology Parasitology and Zoology Institute of Biosciences São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPBarretos School of Health SciencesLife and Health Sciences Research Institute (ICVS) School of Medicine University of MinhoICVS/3B’s-PT Government Associate LaboratoryDepartment of Surgery and Orthopedics Faculty of Medicine São Paulo State University UNESPExperimental Research Unity (UNIPEX) São Paulo State University UNESPDepartment of Biostatistics Plant Biology Parasitology and Zoology Institute of Biosciences São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPFinanciadora de Estudos e Projetos: 02/2010Universidade Estadual Paulista (Unesp)Barretos Cancer HospitalBarretos School of Health SciencesUniversity of MinhoICVS/3B’s-PT Government Associate LaboratorySouza, Cristiano P. [UNESP]Cinegaglia, Naiara C. [UNESP]Felix, Tainara F. [UNESP]Evangelista, Adriane F.Oliveira, Rogério A. [UNESP]Hasimoto, Erica N. [UNESP]Cataneo, Daniele C. [UNESP]Cataneo, Antônio J. M. [UNESP]Neto, Cristovam ScapulatempoViana, Cristiano R.de Paula, Flávia E.Drigo, Sandra A. [UNESP]Carvalho, Robson F. [UNESP]Marques, Márcia M. C.Reis, Rui M.Reis, Patricia P. [UNESP]2021-06-25T10:34:31Z2021-06-25T10:34:31Z2020-09-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-13http://dx.doi.org/10.3390/cancers12092711Cancers, v. 12, n. 9, p. 1-13, 2020.2072-6694http://hdl.handle.net/11449/20657310.3390/cancers120927112-s2.0-85091660791Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengCancersinfo:eu-repo/semantics/openAccess2024-08-14T14:18:28Zoai:repositorio.unesp.br:11449/206573Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-14T14:18:28Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways |
title |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways |
spellingShingle |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways Souza, Cristiano P. [UNESP] Lung cancer MicroRNAs Pathways Survival Target genes |
title_short |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways |
title_full |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways |
title_fullStr |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways |
title_full_unstemmed |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways |
title_sort |
Deregulated micrornas are associated with patient survival and predicted to target genes that modulate lung cancer signaling pathways |
author |
Souza, Cristiano P. [UNESP] |
author_facet |
Souza, Cristiano P. [UNESP] Cinegaglia, Naiara C. [UNESP] Felix, Tainara F. [UNESP] Evangelista, Adriane F. Oliveira, Rogério A. [UNESP] Hasimoto, Erica N. [UNESP] Cataneo, Daniele C. [UNESP] Cataneo, Antônio J. M. [UNESP] Neto, Cristovam Scapulatempo Viana, Cristiano R. de Paula, Flávia E. Drigo, Sandra A. [UNESP] Carvalho, Robson F. [UNESP] Marques, Márcia M. C. Reis, Rui M. Reis, Patricia P. [UNESP] |
author_role |
author |
author2 |
Cinegaglia, Naiara C. [UNESP] Felix, Tainara F. [UNESP] Evangelista, Adriane F. Oliveira, Rogério A. [UNESP] Hasimoto, Erica N. [UNESP] Cataneo, Daniele C. [UNESP] Cataneo, Antônio J. M. [UNESP] Neto, Cristovam Scapulatempo Viana, Cristiano R. de Paula, Flávia E. Drigo, Sandra A. [UNESP] Carvalho, Robson F. [UNESP] Marques, Márcia M. C. Reis, Rui M. Reis, Patricia P. [UNESP] |
author2_role |
author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Barretos Cancer Hospital Barretos School of Health Sciences University of Minho ICVS/3B’s-PT Government Associate Laboratory |
dc.contributor.author.fl_str_mv |
Souza, Cristiano P. [UNESP] Cinegaglia, Naiara C. [UNESP] Felix, Tainara F. [UNESP] Evangelista, Adriane F. Oliveira, Rogério A. [UNESP] Hasimoto, Erica N. [UNESP] Cataneo, Daniele C. [UNESP] Cataneo, Antônio J. M. [UNESP] Neto, Cristovam Scapulatempo Viana, Cristiano R. de Paula, Flávia E. Drigo, Sandra A. [UNESP] Carvalho, Robson F. [UNESP] Marques, Márcia M. C. Reis, Rui M. Reis, Patricia P. [UNESP] |
dc.subject.por.fl_str_mv |
Lung cancer MicroRNAs Pathways Survival Target genes |
topic |
Lung cancer MicroRNAs Pathways Survival Target genes |
description |
(1) Background: Although the advances in diagnostic and treatment strategies, lung cancer remains the leading cause of cancer-related deaths, worldwide, with survival rates as low as 16% in developed countries. Low survival rates are mainly due to late diagnosis and the lack of effective treatment. Therefore, the identification of novel, clinically useful biomarkers is still needed for patients with advanced disease stage and poor survival. Micro(mi)RNAs are non-coding RNAs and potent regulators of gene expression with a possible role as diagnostic, prognostic and predictive biomarkers in cancer. (2) Methods: We applied global miRNA expression profiling analysis using TaqMan® arrays in paired tumor and normal lung tissues (n = 38) from treatment-naïve patients with lung adenocarcinoma (AD; n = 23) and lung squamous cell carcinoma (SCC; n = 15). miRNA target genes were validated using The Cancer Genome Atlas (TCGA) lung AD (n = 561) and lung SCC (n = 523) RNA-Seq datasets. (3) Results: We identified 33 significantly deregulated miRNAs (fold change, FC ≥ 2.0 and p < 0.05) in tumors relative to normal lung tissues, regardless of tumor histology. Enrichment analysis confirmed that genes targeted by the 33 miRNAs are aberrantly expressed in lung AD and SCC, and modulate known pathways in lung cancer. Additionally, high expression of miR-25-3p was significantly associated (p < 0.05) with poor patient survival, when considering both tumor histologies. (4) Conclusions: miR-25-3p may be a potential prognostic biomarker in non-small cell lung cancer. Genes targeted by miRNAs regulate EGFR and TGFβ signaling, among other known pathways relevant to lung tumorigenesis. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-09-01 2021-06-25T10:34:31Z 2021-06-25T10:34:31Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3390/cancers12092711 Cancers, v. 12, n. 9, p. 1-13, 2020. 2072-6694 http://hdl.handle.net/11449/206573 10.3390/cancers12092711 2-s2.0-85091660791 |
url |
http://dx.doi.org/10.3390/cancers12092711 http://hdl.handle.net/11449/206573 |
identifier_str_mv |
Cancers, v. 12, n. 9, p. 1-13, 2020. 2072-6694 10.3390/cancers12092711 2-s2.0-85091660791 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Cancers |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1-13 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128117445754880 |