Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways

Detalhes bibliográficos
Autor(a) principal: Reis, Patricia P. [UNESP]
Data de Publicação: 2020
Outros Autores: Drigo, Sandra A. [UNESP], Carvalho, Robson F. [UNESP], Lapa, Rainer Marco Lopez, Felix, Tainara F. [UNESP], Patel, Devalben, Cheng, Dangxiao, Pintilie, Melania, Liu, Geoffrey, Tsao, Ming-Sound
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/cancers12082071
http://hdl.handle.net/11449/199184
Resumo: Background: Micro(mi)RNAs, potent gene expression regulators associated with tumorigenesis, are stable, abundant circulating molecules, and detectable in plasma. Thus, miRNAs could potentially be useful in early lung cancer detection. We aimed to identify circulating miRNA signatures in plasma from patients with lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), and to verify whether miRNAs regulate lung oncogenesis pathways. Methods: RNA isolated from 139 plasma samples (40 LUAD, 38 LUSC; 61 healthy/non-diseased individuals) were divided into discovery (38 patients; 21 controls for expression quantification using an 800-miRNA panel; Nanostring nCounter®) and validation (40 patients; 40 controls; TaqMan® RT-qPCR) cohorts. Elastic net, Maximizing-R-Square Analysis (MARSA), and C-Statistics were applied for miRNA signature identification. Results: When compared to healthy individuals, 580 of 606 deregulated miRNAs in LUAD and 221 of 226 deregulated miRNAs in LUSC had significantly increased levels. Among the 10 most significantly overexpressed miRNAs, 6 were common to patients with LUAD and LUSC. Further analysis identified three signatures composed of 12 miRNAs. Signatures included miRNAs commonly overexpressed in patient plasma. Enriched pathways included target genes modulated by three miRNAs in the C-Statistics signature: miR-16-5p, miR-92a-3p, and miR-451a. Conclusions: The 3-miRNA signature (miR-16-5p, miR-92a-3p, miR-451a) had high specificity (100%) and sensitivity (84%) to predict cancer (LUAD and LUSC). These miRNAs are predicted to modulate genes and pathways with known roles in lung tumorigenesis, including EGFR, K-RAS, and PI3K/AKT signaling, suggesting that the 3-miRNA signature is biologically relevant in adenocarcinoma and squamous cell carcinoma of the lung.
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spelling Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathwaysBiomarkersLiquid biopsyLung adenocarcinomaLung cancerLung squamous cell carcinomaLung tumorigenesisMicroRNAsPathwaysPlasmaBackground: Micro(mi)RNAs, potent gene expression regulators associated with tumorigenesis, are stable, abundant circulating molecules, and detectable in plasma. Thus, miRNAs could potentially be useful in early lung cancer detection. We aimed to identify circulating miRNA signatures in plasma from patients with lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), and to verify whether miRNAs regulate lung oncogenesis pathways. Methods: RNA isolated from 139 plasma samples (40 LUAD, 38 LUSC; 61 healthy/non-diseased individuals) were divided into discovery (38 patients; 21 controls for expression quantification using an 800-miRNA panel; Nanostring nCounter®) and validation (40 patients; 40 controls; TaqMan® RT-qPCR) cohorts. Elastic net, Maximizing-R-Square Analysis (MARSA), and C-Statistics were applied for miRNA signature identification. Results: When compared to healthy individuals, 580 of 606 deregulated miRNAs in LUAD and 221 of 226 deregulated miRNAs in LUSC had significantly increased levels. Among the 10 most significantly overexpressed miRNAs, 6 were common to patients with LUAD and LUSC. Further analysis identified three signatures composed of 12 miRNAs. Signatures included miRNAs commonly overexpressed in patient plasma. Enriched pathways included target genes modulated by three miRNAs in the C-Statistics signature: miR-16-5p, miR-92a-3p, and miR-451a. Conclusions: The 3-miRNA signature (miR-16-5p, miR-92a-3p, miR-451a) had high specificity (100%) and sensitivity (84%) to predict cancer (LUAD and LUSC). These miRNAs are predicted to modulate genes and pathways with known roles in lung tumorigenesis, including EGFR, K-RAS, and PI3K/AKT signaling, suggesting that the 3-miRNA signature is biologically relevant in adenocarcinoma and squamous cell carcinoma of the lung.Princess Margaret Cancer FoundationFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Health Research FoundationFaculty of Medicine São Paulo State University UNESPExperimental Research Unity São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPUniversidad Católica Los Ángeles de Chimbote Instituto de InvestigaciónPrincess Margaret Cancer Centre University Health NetworkDepartment of Medical Biophysics University of TorontoDepartment of Medical Oncology and Hematology Princess Margaret Cancer CentreDepartment of Laboratory Medicine and Pathobiology University of TorontoLaboratory Medicine Program University Health NetworkFaculty of Medicine São Paulo State University UNESPExperimental Research Unity São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPFAPESP: # 2016/09021-9Health Research Foundation: FDN-148395Universidade Estadual Paulista (Unesp)Instituto de InvestigaciónUniversity Health NetworkUniversity of TorontoPrincess Margaret Cancer CentreReis, Patricia P. [UNESP]Drigo, Sandra A. [UNESP]Carvalho, Robson F. [UNESP]Lapa, Rainer Marco LopezFelix, Tainara F. [UNESP]Patel, DevalbenCheng, DangxiaoPintilie, MelaniaLiu, GeoffreyTsao, Ming-Sound2020-12-12T01:33:03Z2020-12-12T01:33:03Z2020-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-16http://dx.doi.org/10.3390/cancers12082071Cancers, v. 12, n. 8, p. 1-16, 2020.2072-6694http://hdl.handle.net/11449/19918410.3390/cancers120820712-s2.0-85088795038Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengCancersinfo:eu-repo/semantics/openAccess2021-10-23T04:33:55Zoai:repositorio.unesp.br:11449/199184Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:34:28.573457Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
title Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
spellingShingle Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
Reis, Patricia P. [UNESP]
Biomarkers
Liquid biopsy
Lung adenocarcinoma
Lung cancer
Lung squamous cell carcinoma
Lung tumorigenesis
MicroRNAs
Pathways
Plasma
title_short Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
title_full Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
title_fullStr Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
title_full_unstemmed Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
title_sort Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
author Reis, Patricia P. [UNESP]
author_facet Reis, Patricia P. [UNESP]
Drigo, Sandra A. [UNESP]
Carvalho, Robson F. [UNESP]
Lapa, Rainer Marco Lopez
Felix, Tainara F. [UNESP]
Patel, Devalben
Cheng, Dangxiao
Pintilie, Melania
Liu, Geoffrey
Tsao, Ming-Sound
author_role author
author2 Drigo, Sandra A. [UNESP]
Carvalho, Robson F. [UNESP]
Lapa, Rainer Marco Lopez
Felix, Tainara F. [UNESP]
Patel, Devalben
Cheng, Dangxiao
Pintilie, Melania
Liu, Geoffrey
Tsao, Ming-Sound
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Instituto de Investigación
University Health Network
University of Toronto
Princess Margaret Cancer Centre
dc.contributor.author.fl_str_mv Reis, Patricia P. [UNESP]
Drigo, Sandra A. [UNESP]
Carvalho, Robson F. [UNESP]
Lapa, Rainer Marco Lopez
Felix, Tainara F. [UNESP]
Patel, Devalben
Cheng, Dangxiao
Pintilie, Melania
Liu, Geoffrey
Tsao, Ming-Sound
dc.subject.por.fl_str_mv Biomarkers
Liquid biopsy
Lung adenocarcinoma
Lung cancer
Lung squamous cell carcinoma
Lung tumorigenesis
MicroRNAs
Pathways
Plasma
topic Biomarkers
Liquid biopsy
Lung adenocarcinoma
Lung cancer
Lung squamous cell carcinoma
Lung tumorigenesis
MicroRNAs
Pathways
Plasma
description Background: Micro(mi)RNAs, potent gene expression regulators associated with tumorigenesis, are stable, abundant circulating molecules, and detectable in plasma. Thus, miRNAs could potentially be useful in early lung cancer detection. We aimed to identify circulating miRNA signatures in plasma from patients with lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), and to verify whether miRNAs regulate lung oncogenesis pathways. Methods: RNA isolated from 139 plasma samples (40 LUAD, 38 LUSC; 61 healthy/non-diseased individuals) were divided into discovery (38 patients; 21 controls for expression quantification using an 800-miRNA panel; Nanostring nCounter®) and validation (40 patients; 40 controls; TaqMan® RT-qPCR) cohorts. Elastic net, Maximizing-R-Square Analysis (MARSA), and C-Statistics were applied for miRNA signature identification. Results: When compared to healthy individuals, 580 of 606 deregulated miRNAs in LUAD and 221 of 226 deregulated miRNAs in LUSC had significantly increased levels. Among the 10 most significantly overexpressed miRNAs, 6 were common to patients with LUAD and LUSC. Further analysis identified three signatures composed of 12 miRNAs. Signatures included miRNAs commonly overexpressed in patient plasma. Enriched pathways included target genes modulated by three miRNAs in the C-Statistics signature: miR-16-5p, miR-92a-3p, and miR-451a. Conclusions: The 3-miRNA signature (miR-16-5p, miR-92a-3p, miR-451a) had high specificity (100%) and sensitivity (84%) to predict cancer (LUAD and LUSC). These miRNAs are predicted to modulate genes and pathways with known roles in lung tumorigenesis, including EGFR, K-RAS, and PI3K/AKT signaling, suggesting that the 3-miRNA signature is biologically relevant in adenocarcinoma and squamous cell carcinoma of the lung.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-12T01:33:03Z
2020-12-12T01:33:03Z
2020-08-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/cancers12082071
Cancers, v. 12, n. 8, p. 1-16, 2020.
2072-6694
http://hdl.handle.net/11449/199184
10.3390/cancers12082071
2-s2.0-85088795038
url http://dx.doi.org/10.3390/cancers12082071
http://hdl.handle.net/11449/199184
identifier_str_mv Cancers, v. 12, n. 8, p. 1-16, 2020.
2072-6694
10.3390/cancers12082071
2-s2.0-85088795038
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Cancers
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1-16
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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