Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3390/cancers12082071 http://hdl.handle.net/11449/199184 |
Resumo: | Background: Micro(mi)RNAs, potent gene expression regulators associated with tumorigenesis, are stable, abundant circulating molecules, and detectable in plasma. Thus, miRNAs could potentially be useful in early lung cancer detection. We aimed to identify circulating miRNA signatures in plasma from patients with lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), and to verify whether miRNAs regulate lung oncogenesis pathways. Methods: RNA isolated from 139 plasma samples (40 LUAD, 38 LUSC; 61 healthy/non-diseased individuals) were divided into discovery (38 patients; 21 controls for expression quantification using an 800-miRNA panel; Nanostring nCounter®) and validation (40 patients; 40 controls; TaqMan® RT-qPCR) cohorts. Elastic net, Maximizing-R-Square Analysis (MARSA), and C-Statistics were applied for miRNA signature identification. Results: When compared to healthy individuals, 580 of 606 deregulated miRNAs in LUAD and 221 of 226 deregulated miRNAs in LUSC had significantly increased levels. Among the 10 most significantly overexpressed miRNAs, 6 were common to patients with LUAD and LUSC. Further analysis identified three signatures composed of 12 miRNAs. Signatures included miRNAs commonly overexpressed in patient plasma. Enriched pathways included target genes modulated by three miRNAs in the C-Statistics signature: miR-16-5p, miR-92a-3p, and miR-451a. Conclusions: The 3-miRNA signature (miR-16-5p, miR-92a-3p, miR-451a) had high specificity (100%) and sensitivity (84%) to predict cancer (LUAD and LUSC). These miRNAs are predicted to modulate genes and pathways with known roles in lung tumorigenesis, including EGFR, K-RAS, and PI3K/AKT signaling, suggesting that the 3-miRNA signature is biologically relevant in adenocarcinoma and squamous cell carcinoma of the lung. |
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Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathwaysBiomarkersLiquid biopsyLung adenocarcinomaLung cancerLung squamous cell carcinomaLung tumorigenesisMicroRNAsPathwaysPlasmaBackground: Micro(mi)RNAs, potent gene expression regulators associated with tumorigenesis, are stable, abundant circulating molecules, and detectable in plasma. Thus, miRNAs could potentially be useful in early lung cancer detection. We aimed to identify circulating miRNA signatures in plasma from patients with lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), and to verify whether miRNAs regulate lung oncogenesis pathways. Methods: RNA isolated from 139 plasma samples (40 LUAD, 38 LUSC; 61 healthy/non-diseased individuals) were divided into discovery (38 patients; 21 controls for expression quantification using an 800-miRNA panel; Nanostring nCounter®) and validation (40 patients; 40 controls; TaqMan® RT-qPCR) cohorts. Elastic net, Maximizing-R-Square Analysis (MARSA), and C-Statistics were applied for miRNA signature identification. Results: When compared to healthy individuals, 580 of 606 deregulated miRNAs in LUAD and 221 of 226 deregulated miRNAs in LUSC had significantly increased levels. Among the 10 most significantly overexpressed miRNAs, 6 were common to patients with LUAD and LUSC. Further analysis identified three signatures composed of 12 miRNAs. Signatures included miRNAs commonly overexpressed in patient plasma. Enriched pathways included target genes modulated by three miRNAs in the C-Statistics signature: miR-16-5p, miR-92a-3p, and miR-451a. Conclusions: The 3-miRNA signature (miR-16-5p, miR-92a-3p, miR-451a) had high specificity (100%) and sensitivity (84%) to predict cancer (LUAD and LUSC). These miRNAs are predicted to modulate genes and pathways with known roles in lung tumorigenesis, including EGFR, K-RAS, and PI3K/AKT signaling, suggesting that the 3-miRNA signature is biologically relevant in adenocarcinoma and squamous cell carcinoma of the lung.Princess Margaret Cancer FoundationFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Health Research FoundationFaculty of Medicine São Paulo State University UNESPExperimental Research Unity São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPUniversidad Católica Los Ángeles de Chimbote Instituto de InvestigaciónPrincess Margaret Cancer Centre University Health NetworkDepartment of Medical Biophysics University of TorontoDepartment of Medical Oncology and Hematology Princess Margaret Cancer CentreDepartment of Laboratory Medicine and Pathobiology University of TorontoLaboratory Medicine Program University Health NetworkFaculty of Medicine São Paulo State University UNESPExperimental Research Unity São Paulo State University UNESPDepartment of Structural and Functional Biology Institute of Biosciences São Paulo State University UNESPFAPESP: # 2016/09021-9Health Research Foundation: FDN-148395Universidade Estadual Paulista (Unesp)Instituto de InvestigaciónUniversity Health NetworkUniversity of TorontoPrincess Margaret Cancer CentreReis, Patricia P. [UNESP]Drigo, Sandra A. [UNESP]Carvalho, Robson F. [UNESP]Lapa, Rainer Marco LopezFelix, Tainara F. [UNESP]Patel, DevalbenCheng, DangxiaoPintilie, MelaniaLiu, GeoffreyTsao, Ming-Sound2020-12-12T01:33:03Z2020-12-12T01:33:03Z2020-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-16http://dx.doi.org/10.3390/cancers12082071Cancers, v. 12, n. 8, p. 1-16, 2020.2072-6694http://hdl.handle.net/11449/19918410.3390/cancers120820712-s2.0-85088795038Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengCancersinfo:eu-repo/semantics/openAccess2021-10-23T04:33:55Zoai:repositorio.unesp.br:11449/199184Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:34:28.573457Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways |
title |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways |
spellingShingle |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways Reis, Patricia P. [UNESP] Biomarkers Liquid biopsy Lung adenocarcinoma Lung cancer Lung squamous cell carcinoma Lung tumorigenesis MicroRNAs Pathways Plasma |
title_short |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways |
title_full |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways |
title_fullStr |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways |
title_full_unstemmed |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways |
title_sort |
Circulating miR-16-5p, miR-92a-3p, and miR-451a in plasma from lung cancer patients: Potential application in early detection and a regulatory role in tumorigenesis pathways |
author |
Reis, Patricia P. [UNESP] |
author_facet |
Reis, Patricia P. [UNESP] Drigo, Sandra A. [UNESP] Carvalho, Robson F. [UNESP] Lapa, Rainer Marco Lopez Felix, Tainara F. [UNESP] Patel, Devalben Cheng, Dangxiao Pintilie, Melania Liu, Geoffrey Tsao, Ming-Sound |
author_role |
author |
author2 |
Drigo, Sandra A. [UNESP] Carvalho, Robson F. [UNESP] Lapa, Rainer Marco Lopez Felix, Tainara F. [UNESP] Patel, Devalben Cheng, Dangxiao Pintilie, Melania Liu, Geoffrey Tsao, Ming-Sound |
author2_role |
author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Instituto de Investigación University Health Network University of Toronto Princess Margaret Cancer Centre |
dc.contributor.author.fl_str_mv |
Reis, Patricia P. [UNESP] Drigo, Sandra A. [UNESP] Carvalho, Robson F. [UNESP] Lapa, Rainer Marco Lopez Felix, Tainara F. [UNESP] Patel, Devalben Cheng, Dangxiao Pintilie, Melania Liu, Geoffrey Tsao, Ming-Sound |
dc.subject.por.fl_str_mv |
Biomarkers Liquid biopsy Lung adenocarcinoma Lung cancer Lung squamous cell carcinoma Lung tumorigenesis MicroRNAs Pathways Plasma |
topic |
Biomarkers Liquid biopsy Lung adenocarcinoma Lung cancer Lung squamous cell carcinoma Lung tumorigenesis MicroRNAs Pathways Plasma |
description |
Background: Micro(mi)RNAs, potent gene expression regulators associated with tumorigenesis, are stable, abundant circulating molecules, and detectable in plasma. Thus, miRNAs could potentially be useful in early lung cancer detection. We aimed to identify circulating miRNA signatures in plasma from patients with lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), and to verify whether miRNAs regulate lung oncogenesis pathways. Methods: RNA isolated from 139 plasma samples (40 LUAD, 38 LUSC; 61 healthy/non-diseased individuals) were divided into discovery (38 patients; 21 controls for expression quantification using an 800-miRNA panel; Nanostring nCounter®) and validation (40 patients; 40 controls; TaqMan® RT-qPCR) cohorts. Elastic net, Maximizing-R-Square Analysis (MARSA), and C-Statistics were applied for miRNA signature identification. Results: When compared to healthy individuals, 580 of 606 deregulated miRNAs in LUAD and 221 of 226 deregulated miRNAs in LUSC had significantly increased levels. Among the 10 most significantly overexpressed miRNAs, 6 were common to patients with LUAD and LUSC. Further analysis identified three signatures composed of 12 miRNAs. Signatures included miRNAs commonly overexpressed in patient plasma. Enriched pathways included target genes modulated by three miRNAs in the C-Statistics signature: miR-16-5p, miR-92a-3p, and miR-451a. Conclusions: The 3-miRNA signature (miR-16-5p, miR-92a-3p, miR-451a) had high specificity (100%) and sensitivity (84%) to predict cancer (LUAD and LUSC). These miRNAs are predicted to modulate genes and pathways with known roles in lung tumorigenesis, including EGFR, K-RAS, and PI3K/AKT signaling, suggesting that the 3-miRNA signature is biologically relevant in adenocarcinoma and squamous cell carcinoma of the lung. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-12-12T01:33:03Z 2020-12-12T01:33:03Z 2020-08-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3390/cancers12082071 Cancers, v. 12, n. 8, p. 1-16, 2020. 2072-6694 http://hdl.handle.net/11449/199184 10.3390/cancers12082071 2-s2.0-85088795038 |
url |
http://dx.doi.org/10.3390/cancers12082071 http://hdl.handle.net/11449/199184 |
identifier_str_mv |
Cancers, v. 12, n. 8, p. 1-16, 2020. 2072-6694 10.3390/cancers12082071 2-s2.0-85088795038 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Cancers |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1-16 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129221235572736 |