Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1590/1678-4685-gmb-2020-0003 http://hdl.handle.net/11449/208561 |
Resumo: | Supernumerary, or B, chromosomes are present in several eukaryotes, including characid fish of the genus Psalidodon. Notably, Psalidodon paranae carries the most studied B chromosome variant, a macro-B chromosome. The origin of this element was determined to be an isochromosome; however, data regarding its inheritance remain unavailable due to methodological barriers such as the lack of an efficient, non-invasive, and rapid protocol for identifying B-carrying individuals that would enable the design of efficient crossing experiments. Thus, in this study, we primarily aimed was to develop two non-invasive and fast (approximately 2 h) methods to identify the presence of B chromosomes in live specimens of P. paranae based on satellite DNA (satDNA) sequences known to be present in this element. The methods include fluorescence in situ hybridization in interphase nuclei and relative gene quantification of satDNAs using quantitative polymerase chain reaction. Our results reveal the efficiency of quickfluorescence in situ hybridization and quantitative polymerase chain reaction for identifying B-carrying individuals using the proposed satDNA sequences and open up new possibilities to study B chromosomes. |
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Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranaeB chromosomesNeotropical fishesPsalidodonQPCRSatellite DNASupernumerary, or B, chromosomes are present in several eukaryotes, including characid fish of the genus Psalidodon. Notably, Psalidodon paranae carries the most studied B chromosome variant, a macro-B chromosome. The origin of this element was determined to be an isochromosome; however, data regarding its inheritance remain unavailable due to methodological barriers such as the lack of an efficient, non-invasive, and rapid protocol for identifying B-carrying individuals that would enable the design of efficient crossing experiments. Thus, in this study, we primarily aimed was to develop two non-invasive and fast (approximately 2 h) methods to identify the presence of B chromosomes in live specimens of P. paranae based on satellite DNA (satDNA) sequences known to be present in this element. The methods include fluorescence in situ hybridization in interphase nuclei and relative gene quantification of satDNAs using quantitative polymerase chain reaction. Our results reveal the efficiency of quickfluorescence in situ hybridization and quantitative polymerase chain reaction for identifying B-carrying individuals using the proposed satDNA sequences and open up new possibilities to study B chromosomes.Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP) Faculdade de CiênciasUniversidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP) Instituto de BiociênciasUniversidade Federal Rural do Rio de Janeiro Instituto de Ciências Biológicas e da Saúde ICBSCentro nacional de Pesquisa e Conservação da Biota Aquática Continental (CEPTA-ICMBIO)Universidade Estadual de Ponta Grossa Setor de Ciências Biológicas e da SaúdeUniversidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP) Faculdade de CiênciasUniversidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP) Instituto de BiociênciasUniversidade Estadual Paulista (Unesp)ICBSCentro nacional de Pesquisa e Conservação da Biota Aquática Continental (CEPTA-ICMBIO)Universidade Estadual de Ponta Grossa (UEPG)Goes, Caio Augusto Gomes [UNESP]De Andrade Silva, Duílio Mazzoni Zerbinato [UNESP]Utsunomia, RicardoYasui, George ShiguekiArtoni, Roberto FerreiraForesti, Fausto [UNESP]Porto-Foresti, Fábio [UNESP]2021-06-25T11:14:11Z2021-06-25T11:14:11Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1590/1678-4685-gmb-2020-0003Genetics and Molecular Biology, v. 44, n. 2, 2021.1678-46851415-4757http://hdl.handle.net/11449/20856110.1590/1678-4685-gmb-2020-0003S1415-475720210003002022-s2.0-85103627239S1415-47572021000300202.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetics and Molecular Biologyinfo:eu-repo/semantics/openAccess2024-04-23T15:23:17Zoai:repositorio.unesp.br:11449/208561Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:51:12.953042Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae |
title |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae |
spellingShingle |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae Goes, Caio Augusto Gomes [UNESP] B chromosomes Neotropical fishes Psalidodon QPCR Satellite DNA |
title_short |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae |
title_full |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae |
title_fullStr |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae |
title_full_unstemmed |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae |
title_sort |
Establishment of rapid and non-invasive protocols to identify b-carrying individuals of psalidodon paranae |
author |
Goes, Caio Augusto Gomes [UNESP] |
author_facet |
Goes, Caio Augusto Gomes [UNESP] De Andrade Silva, Duílio Mazzoni Zerbinato [UNESP] Utsunomia, Ricardo Yasui, George Shigueki Artoni, Roberto Ferreira Foresti, Fausto [UNESP] Porto-Foresti, Fábio [UNESP] |
author_role |
author |
author2 |
De Andrade Silva, Duílio Mazzoni Zerbinato [UNESP] Utsunomia, Ricardo Yasui, George Shigueki Artoni, Roberto Ferreira Foresti, Fausto [UNESP] Porto-Foresti, Fábio [UNESP] |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) ICBS Centro nacional de Pesquisa e Conservação da Biota Aquática Continental (CEPTA-ICMBIO) Universidade Estadual de Ponta Grossa (UEPG) |
dc.contributor.author.fl_str_mv |
Goes, Caio Augusto Gomes [UNESP] De Andrade Silva, Duílio Mazzoni Zerbinato [UNESP] Utsunomia, Ricardo Yasui, George Shigueki Artoni, Roberto Ferreira Foresti, Fausto [UNESP] Porto-Foresti, Fábio [UNESP] |
dc.subject.por.fl_str_mv |
B chromosomes Neotropical fishes Psalidodon QPCR Satellite DNA |
topic |
B chromosomes Neotropical fishes Psalidodon QPCR Satellite DNA |
description |
Supernumerary, or B, chromosomes are present in several eukaryotes, including characid fish of the genus Psalidodon. Notably, Psalidodon paranae carries the most studied B chromosome variant, a macro-B chromosome. The origin of this element was determined to be an isochromosome; however, data regarding its inheritance remain unavailable due to methodological barriers such as the lack of an efficient, non-invasive, and rapid protocol for identifying B-carrying individuals that would enable the design of efficient crossing experiments. Thus, in this study, we primarily aimed was to develop two non-invasive and fast (approximately 2 h) methods to identify the presence of B chromosomes in live specimens of P. paranae based on satellite DNA (satDNA) sequences known to be present in this element. The methods include fluorescence in situ hybridization in interphase nuclei and relative gene quantification of satDNAs using quantitative polymerase chain reaction. Our results reveal the efficiency of quickfluorescence in situ hybridization and quantitative polymerase chain reaction for identifying B-carrying individuals using the proposed satDNA sequences and open up new possibilities to study B chromosomes. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T11:14:11Z 2021-06-25T11:14:11Z 2021-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1590/1678-4685-gmb-2020-0003 Genetics and Molecular Biology, v. 44, n. 2, 2021. 1678-4685 1415-4757 http://hdl.handle.net/11449/208561 10.1590/1678-4685-gmb-2020-0003 S1415-47572021000300202 2-s2.0-85103627239 S1415-47572021000300202.pdf |
url |
http://dx.doi.org/10.1590/1678-4685-gmb-2020-0003 http://hdl.handle.net/11449/208561 |
identifier_str_mv |
Genetics and Molecular Biology, v. 44, n. 2, 2021. 1678-4685 1415-4757 10.1590/1678-4685-gmb-2020-0003 S1415-47572021000300202 2-s2.0-85103627239 S1415-47572021000300202.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Genetics and Molecular Biology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128709934186496 |