A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs

Detalhes bibliográficos
Autor(a) principal: Silva, I. da
Data de Publicação: 2002
Outros Autores: Angelo, P. C. S., Molfetta, J. B., Ferraz, M. T., Silva, L. L. P. da, Goldman, G. H., Goldman, M. H. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1590/S0100-879X2002000800001
http://hdl.handle.net/11449/66949
Resumo: In order to identify genes expressed in the pistil that may have a role in the reproduction process, we have established an expressed sequence tags project to randomly sequence clones from a Nicotiana tabacum stigma/style cDNA library. A cDNA clone (MTL-8) showing high sequence similarity to genes encoding glycine-rich RNA-binding proteins was chosen for further characterization. Based on the extensive identity of MTL-8 to the RGP-1a sequence of N. sylvestris, a primer was defined to extend the 5′ sequence of MTL-8 by RT-PCR from stigma/style RNAs. The amplification product was sequenced and it was confirmed that MTL-8 corresponds to an mRNA encoding a glycine-rich RNA-binding protein. Two transcripts of different sizes and expression patterns were identified when the MTL-8 cDNA insert was used as a probe in RNA blots. The largest is 1,100 nucleotides (nt) long and markedly predominant in ovaries. The smaller transcript, with 600 nt, is ubiquitous to the vegetative and reproductive organs analyzed (roots, stems, leaves, sepals, petals, stamens, stigmas/styles and ovaries). Plants submitted to stress (wounding, virus infection and ethylene treatment) presented an increased level of the 600-nt transcript in leaves, especially after tobacco necrosis virus infection. In contrast, the level of the 1,100-nt transcript seems to be unaffected by the stress conditions tested. Results of Southern blot experiments have suggested that MTL-8 is present in one or two copies in the tobacco genome. Our results suggest that the shorter transcript is related to stress while the larger one is a flower predominant and nonstress-inducible messenger.
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spelling A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organsGlycine-rich proteinNicotiana tabacumPistil expressionRNA-binding proteinStress conditionsVirus infectioncomplementary DNAglycinemessenger RNARNA binding proteincontrolled studydefective virusDNA determinationDNA libraryDNA probeexpressed sequence tagflowergene expressiongene identificationgenetic transcriptiongenomemolecular cloningnonhumanNorthern blottingpetalpistilpistil stigmapistil styleplant diseaseplant leafplant morphologyplant ovaryplant reproductionplant rootplant stemplant stressreverse transcription polymerase chain reactionreviewsequence homologySouthern blottingstamentobaccoFlowersGene Expression ProfilingGene Expression Regulation, DevelopmentalGene LibraryMolecular Sequence DataNucleic Acid HybridizationPlant ProteinsReproductionReverse Transcriptase Polymerase Chain ReactionRNA-Binding ProteinsSequence AlignmentSequence Analysis, ProteinSequence Analysis, RNATobaccoNicotiana sylvestrisTabacumunidentified tobacco necrosis virusIn order to identify genes expressed in the pistil that may have a role in the reproduction process, we have established an expressed sequence tags project to randomly sequence clones from a Nicotiana tabacum stigma/style cDNA library. A cDNA clone (MTL-8) showing high sequence similarity to genes encoding glycine-rich RNA-binding proteins was chosen for further characterization. Based on the extensive identity of MTL-8 to the RGP-1a sequence of N. sylvestris, a primer was defined to extend the 5′ sequence of MTL-8 by RT-PCR from stigma/style RNAs. The amplification product was sequenced and it was confirmed that MTL-8 corresponds to an mRNA encoding a glycine-rich RNA-binding protein. Two transcripts of different sizes and expression patterns were identified when the MTL-8 cDNA insert was used as a probe in RNA blots. The largest is 1,100 nucleotides (nt) long and markedly predominant in ovaries. The smaller transcript, with 600 nt, is ubiquitous to the vegetative and reproductive organs analyzed (roots, stems, leaves, sepals, petals, stamens, stigmas/styles and ovaries). Plants submitted to stress (wounding, virus infection and ethylene treatment) presented an increased level of the 600-nt transcript in leaves, especially after tobacco necrosis virus infection. In contrast, the level of the 1,100-nt transcript seems to be unaffected by the stress conditions tested. Results of Southern blot experiments have suggested that MTL-8 is present in one or two copies in the tobacco genome. Our results suggest that the shorter transcript is related to stress while the larger one is a flower predominant and nonstress-inducible messenger.Departamento de Biologia Faculdade de Filosofia Universidade de São Paulo, Ribeirão Preto, SPFac. de Ciencias Agrarias e Vet. Univ. Estadual Julio de Mesquita, Jaboticabal, SPDepartamento de Genética Fac. de Medicina de Ribeirao Preto Universidade de São Paulo, Ribeirão Preto, SPDept. de Ciencias Farmaceuticas Faculdade de Ciencias Farmaceuticas Universidade de São Paulo, Ribeirão Preto, SPUniversidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Silva, I. daAngelo, P. C. S.Molfetta, J. B.Ferraz, M. T.Silva, L. L. P. daGoldman, G. H.Goldman, M. H. S.2014-05-27T11:20:29Z2014-05-27T11:20:29Z2002-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article861-868application/pdfhttp://dx.doi.org/10.1590/S0100-879X2002000800001Brazilian Journal of Medical and Biological Research, v. 35, n. 8, p. 861-868, 2002.0100-879Xhttp://hdl.handle.net/11449/6694910.1590/S0100-879X2002000800001S0100-879X20020008000012-s2.0-00367038172-s2.0-0036703817.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBrazilian Journal of Medical and Biological Research1.492info:eu-repo/semantics/openAccess2024-01-09T06:26:26Zoai:repositorio.unesp.br:11449/66949Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-01-09T06:26:26Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
title A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
spellingShingle A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
Silva, I. da
Glycine-rich protein
Nicotiana tabacum
Pistil expression
RNA-binding protein
Stress conditions
Virus infection
complementary DNA
glycine
messenger RNA
RNA binding protein
controlled study
defective virus
DNA determination
DNA library
DNA probe
expressed sequence tag
flower
gene expression
gene identification
genetic transcription
genome
molecular cloning
nonhuman
Northern blotting
petal
pistil
pistil stigma
pistil style
plant disease
plant leaf
plant morphology
plant ovary
plant reproduction
plant root
plant stem
plant stress
reverse transcription polymerase chain reaction
review
sequence homology
Southern blotting
stamen
tobacco
Flowers
Gene Expression Profiling
Gene Expression Regulation, Developmental
Gene Library
Molecular Sequence Data
Nucleic Acid Hybridization
Plant Proteins
Reproduction
Reverse Transcriptase Polymerase Chain Reaction
RNA-Binding Proteins
Sequence Alignment
Sequence Analysis, Protein
Sequence Analysis, RNA
Tobacco
Nicotiana sylvestris
Tabacum
unidentified tobacco necrosis virus
title_short A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
title_full A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
title_fullStr A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
title_full_unstemmed A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
title_sort A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
author Silva, I. da
author_facet Silva, I. da
Angelo, P. C. S.
Molfetta, J. B.
Ferraz, M. T.
Silva, L. L. P. da
Goldman, G. H.
Goldman, M. H. S.
author_role author
author2 Angelo, P. C. S.
Molfetta, J. B.
Ferraz, M. T.
Silva, L. L. P. da
Goldman, G. H.
Goldman, M. H. S.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Silva, I. da
Angelo, P. C. S.
Molfetta, J. B.
Ferraz, M. T.
Silva, L. L. P. da
Goldman, G. H.
Goldman, M. H. S.
dc.subject.por.fl_str_mv Glycine-rich protein
Nicotiana tabacum
Pistil expression
RNA-binding protein
Stress conditions
Virus infection
complementary DNA
glycine
messenger RNA
RNA binding protein
controlled study
defective virus
DNA determination
DNA library
DNA probe
expressed sequence tag
flower
gene expression
gene identification
genetic transcription
genome
molecular cloning
nonhuman
Northern blotting
petal
pistil
pistil stigma
pistil style
plant disease
plant leaf
plant morphology
plant ovary
plant reproduction
plant root
plant stem
plant stress
reverse transcription polymerase chain reaction
review
sequence homology
Southern blotting
stamen
tobacco
Flowers
Gene Expression Profiling
Gene Expression Regulation, Developmental
Gene Library
Molecular Sequence Data
Nucleic Acid Hybridization
Plant Proteins
Reproduction
Reverse Transcriptase Polymerase Chain Reaction
RNA-Binding Proteins
Sequence Alignment
Sequence Analysis, Protein
Sequence Analysis, RNA
Tobacco
Nicotiana sylvestris
Tabacum
unidentified tobacco necrosis virus
topic Glycine-rich protein
Nicotiana tabacum
Pistil expression
RNA-binding protein
Stress conditions
Virus infection
complementary DNA
glycine
messenger RNA
RNA binding protein
controlled study
defective virus
DNA determination
DNA library
DNA probe
expressed sequence tag
flower
gene expression
gene identification
genetic transcription
genome
molecular cloning
nonhuman
Northern blotting
petal
pistil
pistil stigma
pistil style
plant disease
plant leaf
plant morphology
plant ovary
plant reproduction
plant root
plant stem
plant stress
reverse transcription polymerase chain reaction
review
sequence homology
Southern blotting
stamen
tobacco
Flowers
Gene Expression Profiling
Gene Expression Regulation, Developmental
Gene Library
Molecular Sequence Data
Nucleic Acid Hybridization
Plant Proteins
Reproduction
Reverse Transcriptase Polymerase Chain Reaction
RNA-Binding Proteins
Sequence Alignment
Sequence Analysis, Protein
Sequence Analysis, RNA
Tobacco
Nicotiana sylvestris
Tabacum
unidentified tobacco necrosis virus
description In order to identify genes expressed in the pistil that may have a role in the reproduction process, we have established an expressed sequence tags project to randomly sequence clones from a Nicotiana tabacum stigma/style cDNA library. A cDNA clone (MTL-8) showing high sequence similarity to genes encoding glycine-rich RNA-binding proteins was chosen for further characterization. Based on the extensive identity of MTL-8 to the RGP-1a sequence of N. sylvestris, a primer was defined to extend the 5′ sequence of MTL-8 by RT-PCR from stigma/style RNAs. The amplification product was sequenced and it was confirmed that MTL-8 corresponds to an mRNA encoding a glycine-rich RNA-binding protein. Two transcripts of different sizes and expression patterns were identified when the MTL-8 cDNA insert was used as a probe in RNA blots. The largest is 1,100 nucleotides (nt) long and markedly predominant in ovaries. The smaller transcript, with 600 nt, is ubiquitous to the vegetative and reproductive organs analyzed (roots, stems, leaves, sepals, petals, stamens, stigmas/styles and ovaries). Plants submitted to stress (wounding, virus infection and ethylene treatment) presented an increased level of the 600-nt transcript in leaves, especially after tobacco necrosis virus infection. In contrast, the level of the 1,100-nt transcript seems to be unaffected by the stress conditions tested. Results of Southern blot experiments have suggested that MTL-8 is present in one or two copies in the tobacco genome. Our results suggest that the shorter transcript is related to stress while the larger one is a flower predominant and nonstress-inducible messenger.
publishDate 2002
dc.date.none.fl_str_mv 2002-08-01
2014-05-27T11:20:29Z
2014-05-27T11:20:29Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/S0100-879X2002000800001
Brazilian Journal of Medical and Biological Research, v. 35, n. 8, p. 861-868, 2002.
0100-879X
http://hdl.handle.net/11449/66949
10.1590/S0100-879X2002000800001
S0100-879X2002000800001
2-s2.0-0036703817
2-s2.0-0036703817.pdf
url http://dx.doi.org/10.1590/S0100-879X2002000800001
http://hdl.handle.net/11449/66949
identifier_str_mv Brazilian Journal of Medical and Biological Research, v. 35, n. 8, p. 861-868, 2002.
0100-879X
10.1590/S0100-879X2002000800001
S0100-879X2002000800001
2-s2.0-0036703817
2-s2.0-0036703817.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Brazilian Journal of Medical and Biological Research
1.492
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 861-868
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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