A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs
Autor(a) principal: | |
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Data de Publicação: | 2002 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1590/S0100-879X2002000800001 http://hdl.handle.net/11449/66949 |
Resumo: | In order to identify genes expressed in the pistil that may have a role in the reproduction process, we have established an expressed sequence tags project to randomly sequence clones from a Nicotiana tabacum stigma/style cDNA library. A cDNA clone (MTL-8) showing high sequence similarity to genes encoding glycine-rich RNA-binding proteins was chosen for further characterization. Based on the extensive identity of MTL-8 to the RGP-1a sequence of N. sylvestris, a primer was defined to extend the 5′ sequence of MTL-8 by RT-PCR from stigma/style RNAs. The amplification product was sequenced and it was confirmed that MTL-8 corresponds to an mRNA encoding a glycine-rich RNA-binding protein. Two transcripts of different sizes and expression patterns were identified when the MTL-8 cDNA insert was used as a probe in RNA blots. The largest is 1,100 nucleotides (nt) long and markedly predominant in ovaries. The smaller transcript, with 600 nt, is ubiquitous to the vegetative and reproductive organs analyzed (roots, stems, leaves, sepals, petals, stamens, stigmas/styles and ovaries). Plants submitted to stress (wounding, virus infection and ethylene treatment) presented an increased level of the 600-nt transcript in leaves, especially after tobacco necrosis virus infection. In contrast, the level of the 1,100-nt transcript seems to be unaffected by the stress conditions tested. Results of Southern blot experiments have suggested that MTL-8 is present in one or two copies in the tobacco genome. Our results suggest that the shorter transcript is related to stress while the larger one is a flower predominant and nonstress-inducible messenger. |
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A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organsGlycine-rich proteinNicotiana tabacumPistil expressionRNA-binding proteinStress conditionsVirus infectioncomplementary DNAglycinemessenger RNARNA binding proteincontrolled studydefective virusDNA determinationDNA libraryDNA probeexpressed sequence tagflowergene expressiongene identificationgenetic transcriptiongenomemolecular cloningnonhumanNorthern blottingpetalpistilpistil stigmapistil styleplant diseaseplant leafplant morphologyplant ovaryplant reproductionplant rootplant stemplant stressreverse transcription polymerase chain reactionreviewsequence homologySouthern blottingstamentobaccoFlowersGene Expression ProfilingGene Expression Regulation, DevelopmentalGene LibraryMolecular Sequence DataNucleic Acid HybridizationPlant ProteinsReproductionReverse Transcriptase Polymerase Chain ReactionRNA-Binding ProteinsSequence AlignmentSequence Analysis, ProteinSequence Analysis, RNATobaccoNicotiana sylvestrisTabacumunidentified tobacco necrosis virusIn order to identify genes expressed in the pistil that may have a role in the reproduction process, we have established an expressed sequence tags project to randomly sequence clones from a Nicotiana tabacum stigma/style cDNA library. A cDNA clone (MTL-8) showing high sequence similarity to genes encoding glycine-rich RNA-binding proteins was chosen for further characterization. Based on the extensive identity of MTL-8 to the RGP-1a sequence of N. sylvestris, a primer was defined to extend the 5′ sequence of MTL-8 by RT-PCR from stigma/style RNAs. The amplification product was sequenced and it was confirmed that MTL-8 corresponds to an mRNA encoding a glycine-rich RNA-binding protein. Two transcripts of different sizes and expression patterns were identified when the MTL-8 cDNA insert was used as a probe in RNA blots. The largest is 1,100 nucleotides (nt) long and markedly predominant in ovaries. The smaller transcript, with 600 nt, is ubiquitous to the vegetative and reproductive organs analyzed (roots, stems, leaves, sepals, petals, stamens, stigmas/styles and ovaries). Plants submitted to stress (wounding, virus infection and ethylene treatment) presented an increased level of the 600-nt transcript in leaves, especially after tobacco necrosis virus infection. In contrast, the level of the 1,100-nt transcript seems to be unaffected by the stress conditions tested. Results of Southern blot experiments have suggested that MTL-8 is present in one or two copies in the tobacco genome. Our results suggest that the shorter transcript is related to stress while the larger one is a flower predominant and nonstress-inducible messenger.Departamento de Biologia Faculdade de Filosofia Universidade de São Paulo, Ribeirão Preto, SPFac. de Ciencias Agrarias e Vet. Univ. Estadual Julio de Mesquita, Jaboticabal, SPDepartamento de Genética Fac. de Medicina de Ribeirao Preto Universidade de São Paulo, Ribeirão Preto, SPDept. de Ciencias Farmaceuticas Faculdade de Ciencias Farmaceuticas Universidade de São Paulo, Ribeirão Preto, SPUniversidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Silva, I. daAngelo, P. C. S.Molfetta, J. B.Ferraz, M. T.Silva, L. L. P. daGoldman, G. H.Goldman, M. H. S.2014-05-27T11:20:29Z2014-05-27T11:20:29Z2002-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article861-868application/pdfhttp://dx.doi.org/10.1590/S0100-879X2002000800001Brazilian Journal of Medical and Biological Research, v. 35, n. 8, p. 861-868, 2002.0100-879Xhttp://hdl.handle.net/11449/6694910.1590/S0100-879X2002000800001S0100-879X20020008000012-s2.0-00367038172-s2.0-0036703817.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBrazilian Journal of Medical and Biological Research1.492info:eu-repo/semantics/openAccess2024-01-09T06:26:26Zoai:repositorio.unesp.br:11449/66949Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-01-09T06:26:26Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs |
title |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs |
spellingShingle |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs Silva, I. da Glycine-rich protein Nicotiana tabacum Pistil expression RNA-binding protein Stress conditions Virus infection complementary DNA glycine messenger RNA RNA binding protein controlled study defective virus DNA determination DNA library DNA probe expressed sequence tag flower gene expression gene identification genetic transcription genome molecular cloning nonhuman Northern blotting petal pistil pistil stigma pistil style plant disease plant leaf plant morphology plant ovary plant reproduction plant root plant stem plant stress reverse transcription polymerase chain reaction review sequence homology Southern blotting stamen tobacco Flowers Gene Expression Profiling Gene Expression Regulation, Developmental Gene Library Molecular Sequence Data Nucleic Acid Hybridization Plant Proteins Reproduction Reverse Transcriptase Polymerase Chain Reaction RNA-Binding Proteins Sequence Alignment Sequence Analysis, Protein Sequence Analysis, RNA Tobacco Nicotiana sylvestris Tabacum unidentified tobacco necrosis virus |
title_short |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs |
title_full |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs |
title_fullStr |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs |
title_full_unstemmed |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs |
title_sort |
A tobacco cDNA reveals two different transcription patterns in vegetative and reproductive organs |
author |
Silva, I. da |
author_facet |
Silva, I. da Angelo, P. C. S. Molfetta, J. B. Ferraz, M. T. Silva, L. L. P. da Goldman, G. H. Goldman, M. H. S. |
author_role |
author |
author2 |
Angelo, P. C. S. Molfetta, J. B. Ferraz, M. T. Silva, L. L. P. da Goldman, G. H. Goldman, M. H. S. |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Silva, I. da Angelo, P. C. S. Molfetta, J. B. Ferraz, M. T. Silva, L. L. P. da Goldman, G. H. Goldman, M. H. S. |
dc.subject.por.fl_str_mv |
Glycine-rich protein Nicotiana tabacum Pistil expression RNA-binding protein Stress conditions Virus infection complementary DNA glycine messenger RNA RNA binding protein controlled study defective virus DNA determination DNA library DNA probe expressed sequence tag flower gene expression gene identification genetic transcription genome molecular cloning nonhuman Northern blotting petal pistil pistil stigma pistil style plant disease plant leaf plant morphology plant ovary plant reproduction plant root plant stem plant stress reverse transcription polymerase chain reaction review sequence homology Southern blotting stamen tobacco Flowers Gene Expression Profiling Gene Expression Regulation, Developmental Gene Library Molecular Sequence Data Nucleic Acid Hybridization Plant Proteins Reproduction Reverse Transcriptase Polymerase Chain Reaction RNA-Binding Proteins Sequence Alignment Sequence Analysis, Protein Sequence Analysis, RNA Tobacco Nicotiana sylvestris Tabacum unidentified tobacco necrosis virus |
topic |
Glycine-rich protein Nicotiana tabacum Pistil expression RNA-binding protein Stress conditions Virus infection complementary DNA glycine messenger RNA RNA binding protein controlled study defective virus DNA determination DNA library DNA probe expressed sequence tag flower gene expression gene identification genetic transcription genome molecular cloning nonhuman Northern blotting petal pistil pistil stigma pistil style plant disease plant leaf plant morphology plant ovary plant reproduction plant root plant stem plant stress reverse transcription polymerase chain reaction review sequence homology Southern blotting stamen tobacco Flowers Gene Expression Profiling Gene Expression Regulation, Developmental Gene Library Molecular Sequence Data Nucleic Acid Hybridization Plant Proteins Reproduction Reverse Transcriptase Polymerase Chain Reaction RNA-Binding Proteins Sequence Alignment Sequence Analysis, Protein Sequence Analysis, RNA Tobacco Nicotiana sylvestris Tabacum unidentified tobacco necrosis virus |
description |
In order to identify genes expressed in the pistil that may have a role in the reproduction process, we have established an expressed sequence tags project to randomly sequence clones from a Nicotiana tabacum stigma/style cDNA library. A cDNA clone (MTL-8) showing high sequence similarity to genes encoding glycine-rich RNA-binding proteins was chosen for further characterization. Based on the extensive identity of MTL-8 to the RGP-1a sequence of N. sylvestris, a primer was defined to extend the 5′ sequence of MTL-8 by RT-PCR from stigma/style RNAs. The amplification product was sequenced and it was confirmed that MTL-8 corresponds to an mRNA encoding a glycine-rich RNA-binding protein. Two transcripts of different sizes and expression patterns were identified when the MTL-8 cDNA insert was used as a probe in RNA blots. The largest is 1,100 nucleotides (nt) long and markedly predominant in ovaries. The smaller transcript, with 600 nt, is ubiquitous to the vegetative and reproductive organs analyzed (roots, stems, leaves, sepals, petals, stamens, stigmas/styles and ovaries). Plants submitted to stress (wounding, virus infection and ethylene treatment) presented an increased level of the 600-nt transcript in leaves, especially after tobacco necrosis virus infection. In contrast, the level of the 1,100-nt transcript seems to be unaffected by the stress conditions tested. Results of Southern blot experiments have suggested that MTL-8 is present in one or two copies in the tobacco genome. Our results suggest that the shorter transcript is related to stress while the larger one is a flower predominant and nonstress-inducible messenger. |
publishDate |
2002 |
dc.date.none.fl_str_mv |
2002-08-01 2014-05-27T11:20:29Z 2014-05-27T11:20:29Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1590/S0100-879X2002000800001 Brazilian Journal of Medical and Biological Research, v. 35, n. 8, p. 861-868, 2002. 0100-879X http://hdl.handle.net/11449/66949 10.1590/S0100-879X2002000800001 S0100-879X2002000800001 2-s2.0-0036703817 2-s2.0-0036703817.pdf |
url |
http://dx.doi.org/10.1590/S0100-879X2002000800001 http://hdl.handle.net/11449/66949 |
identifier_str_mv |
Brazilian Journal of Medical and Biological Research, v. 35, n. 8, p. 861-868, 2002. 0100-879X 10.1590/S0100-879X2002000800001 S0100-879X2002000800001 2-s2.0-0036703817 2-s2.0-0036703817.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Brazilian Journal of Medical and Biological Research 1.492 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
861-868 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1828315622262439936 |