Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen

Detalhes bibliográficos
Autor(a) principal: Basseto, Marco Antonio
Data de Publicação: 2019
Outros Autores: Vicentini, Samara Nunes Campos [UNESP], Gasparotto, Luadir, Ceresini, Paulo Cezar
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1590/0100-5405/185131
http://hdl.handle.net/11449/199556
Resumo: Thanatephorus target spot is one of the most important diseases of rubber tree (Hevea brasiliensis) in the Amazon. However, an important question about the actual phylogenetic placement of this pathogen has not been answered yet. In this study, we analyzed the patterns of genetic variation in sequences of the ITS-5.8S rDNA region from a population of T. cucumeris (asexual phase = Rhizoctonia solani AG 2-2) associated with the rubber tree target spot sampled in Belém (Pará), Manaus (Amazonas) and Xapuri/Rio Branco (Acre), phylogenetically comparing with worldwide described members of AG 2. This study represents an important step to reveal the etiology of the asexual phase of T. cucumeris in the rubber tree. Phylogenetically, based on Bayesian analyses, we found support to nominate a new group of R. solani anastomosis associated with rubber tree target spot: AG 2-2 Hb. This group consisted of an independent evolutionary unit in relation to the worldwide described sub-groups of AG 2-2. Considering the gene genealogy built by coalescent analysis, we observed that the population of R. solani AG 2-2 Hb from Belém was relatively older than the other two analyzed populations. The common ancestor of all three populations is associated with passion-fruit (Passiflora edulis) foliar blight in Belém and has about 0.8 coalescent evolutionary units of age. No haplotype of the ITS-5.8S region of AG 2-2 Hb from Belém was observed in any other region. However, the population from Manaus shared two of its four haplotypes with those observed in Xapuri/Rio Branco, Acre, indicating gene flow.
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spelling Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the PathogenMancha areolada de Thanatephorus da seringueira na Amazônia: Identificação filogenética e variação genética em populações do patógenoAnastomosis groupsRhizoctonia solaniRibosomal DNAThanatephorus cucumerisThanatephorus target spot is one of the most important diseases of rubber tree (Hevea brasiliensis) in the Amazon. However, an important question about the actual phylogenetic placement of this pathogen has not been answered yet. In this study, we analyzed the patterns of genetic variation in sequences of the ITS-5.8S rDNA region from a population of T. cucumeris (asexual phase = Rhizoctonia solani AG 2-2) associated with the rubber tree target spot sampled in Belém (Pará), Manaus (Amazonas) and Xapuri/Rio Branco (Acre), phylogenetically comparing with worldwide described members of AG 2. This study represents an important step to reveal the etiology of the asexual phase of T. cucumeris in the rubber tree. Phylogenetically, based on Bayesian analyses, we found support to nominate a new group of R. solani anastomosis associated with rubber tree target spot: AG 2-2 Hb. This group consisted of an independent evolutionary unit in relation to the worldwide described sub-groups of AG 2-2. Considering the gene genealogy built by coalescent analysis, we observed that the population of R. solani AG 2-2 Hb from Belém was relatively older than the other two analyzed populations. The common ancestor of all three populations is associated with passion-fruit (Passiflora edulis) foliar blight in Belém and has about 0.8 coalescent evolutionary units of age. No haplotype of the ITS-5.8S region of AG 2-2 Hb from Belém was observed in any other region. However, the population from Manaus shared two of its four haplotypes with those observed in Xapuri/Rio Branco, Acre, indicating gene flow.Coordenadoria de Defesa Agropecuária Escritório de Defesa Agropecuária (EDA) de Araçatuba, Av. Governador Mário Covas 2600Universidade Estadual Paulista (UNESP) Campus de Ilha Solteira Departamento de Fitossanidade Engenharia Rural e SolosEmpresa Brasileira de Pesquisa Agropecuária Embrapa Amazônia Ocidental, Rod. AM-010 km 29 (Estr. Manaus/Itacoatiara), CP 319Universidade Estadual Paulista (UNESP) Campus de Ilha Solteira Departamento de Fitossanidade Engenharia Rural e SolosEscritório de Defesa Agropecuária (EDA) de AraçatubaUniversidade Estadual Paulista (Unesp)Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Basseto, Marco AntonioVicentini, Samara Nunes Campos [UNESP]Gasparotto, LuadirCeresini, Paulo Cezar2020-12-12T01:43:09Z2020-12-12T01:43:09Z2019-07-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article285-294application/pdfhttp://dx.doi.org/10.1590/0100-5405/185131Summa Phytopathologica, v. 45, n. 3, p. 285-294, 2019.0100-5405http://hdl.handle.net/11449/19955610.1590/0100-5405/185131S0100-540520190003002852-s2.0-85073988505S0100-54052019000300285.pdf26350920583008540000-0003-2381-2792Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPporSumma Phytopathologicainfo:eu-repo/semantics/openAccess2024-07-05T18:12:41Zoai:repositorio.unesp.br:11449/199556Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T15:15:09.560811Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
Mancha areolada de Thanatephorus da seringueira na Amazônia: Identificação filogenética e variação genética em populações do patógeno
title Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
spellingShingle Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
Basseto, Marco Antonio
Anastomosis groups
Rhizoctonia solani
Ribosomal DNA
Thanatephorus cucumeris
title_short Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
title_full Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
title_fullStr Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
title_full_unstemmed Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
title_sort Thanatephorus target spot on rubber tree in the Amazon: Phylogenetics and genetic variation in populations of the Pathogen
author Basseto, Marco Antonio
author_facet Basseto, Marco Antonio
Vicentini, Samara Nunes Campos [UNESP]
Gasparotto, Luadir
Ceresini, Paulo Cezar
author_role author
author2 Vicentini, Samara Nunes Campos [UNESP]
Gasparotto, Luadir
Ceresini, Paulo Cezar
author2_role author
author
author
dc.contributor.none.fl_str_mv Escritório de Defesa Agropecuária (EDA) de Araçatuba
Universidade Estadual Paulista (Unesp)
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.contributor.author.fl_str_mv Basseto, Marco Antonio
Vicentini, Samara Nunes Campos [UNESP]
Gasparotto, Luadir
Ceresini, Paulo Cezar
dc.subject.por.fl_str_mv Anastomosis groups
Rhizoctonia solani
Ribosomal DNA
Thanatephorus cucumeris
topic Anastomosis groups
Rhizoctonia solani
Ribosomal DNA
Thanatephorus cucumeris
description Thanatephorus target spot is one of the most important diseases of rubber tree (Hevea brasiliensis) in the Amazon. However, an important question about the actual phylogenetic placement of this pathogen has not been answered yet. In this study, we analyzed the patterns of genetic variation in sequences of the ITS-5.8S rDNA region from a population of T. cucumeris (asexual phase = Rhizoctonia solani AG 2-2) associated with the rubber tree target spot sampled in Belém (Pará), Manaus (Amazonas) and Xapuri/Rio Branco (Acre), phylogenetically comparing with worldwide described members of AG 2. This study represents an important step to reveal the etiology of the asexual phase of T. cucumeris in the rubber tree. Phylogenetically, based on Bayesian analyses, we found support to nominate a new group of R. solani anastomosis associated with rubber tree target spot: AG 2-2 Hb. This group consisted of an independent evolutionary unit in relation to the worldwide described sub-groups of AG 2-2. Considering the gene genealogy built by coalescent analysis, we observed that the population of R. solani AG 2-2 Hb from Belém was relatively older than the other two analyzed populations. The common ancestor of all three populations is associated with passion-fruit (Passiflora edulis) foliar blight in Belém and has about 0.8 coalescent evolutionary units of age. No haplotype of the ITS-5.8S region of AG 2-2 Hb from Belém was observed in any other region. However, the population from Manaus shared two of its four haplotypes with those observed in Xapuri/Rio Branco, Acre, indicating gene flow.
publishDate 2019
dc.date.none.fl_str_mv 2019-07-01
2020-12-12T01:43:09Z
2020-12-12T01:43:09Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/0100-5405/185131
Summa Phytopathologica, v. 45, n. 3, p. 285-294, 2019.
0100-5405
http://hdl.handle.net/11449/199556
10.1590/0100-5405/185131
S0100-54052019000300285
2-s2.0-85073988505
S0100-54052019000300285.pdf
2635092058300854
0000-0003-2381-2792
url http://dx.doi.org/10.1590/0100-5405/185131
http://hdl.handle.net/11449/199556
identifier_str_mv Summa Phytopathologica, v. 45, n. 3, p. 285-294, 2019.
0100-5405
10.1590/0100-5405/185131
S0100-54052019000300285
2-s2.0-85073988505
S0100-54052019000300285.pdf
2635092058300854
0000-0003-2381-2792
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv Summa Phytopathologica
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 285-294
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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