Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions

Detalhes bibliográficos
Autor(a) principal: Borges, Fabio Renato
Data de Publicação: 2017
Outros Autores: Necchi, Orlando [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.11646/phytotaxa.302.2.1
http://hdl.handle.net/11449/220820
Resumo: South American studies on the genus Chara are relatively scarce, most consisting of floristic surveys and using only traditional morphological characters. This study is a first approach to the systematics of the genus Chara applying modern techniques (DNA sequences and oospore SEM analyses) in addition to the alpha-taxonomy investigations that have been conducted in Brazil. Twelve populations of Chara were analyzed from the midwest and southeast regions of Brazil. Sequences of three molecular markers were applied to infer phylogenies. The ultrastructure of the oospore wall and currently used morphological characters were analyzed for Chara populations. Maximum likelihood and Bayesian analyses of sequences of rbcL, ITS2, and matK were congruent in that they grouped the species in six clades, each representing one species: Chara braunii C.C. Gmelin, C. foliolosa C.L.Willdenow, C. guairensis R.Bicudo, C. haitensis M.P.J.F. Turpin, C. hydropitys H. Reichenbach and C. rusbyana M. Howe. Morphological characters, including ultrastructure of oospore wall, provided good evidences to characterize each species. Molecular data supported the recent view that some traditional infra-generic taxa (e.g. subgenus Charopsis and subsection Willdenowia) are not supported in phylogenetic analyses, whereas some species (e.g. C. foliolosa, C. haitensis, C. hydropitys and C. rusbyana previously considered as varieties and forms of C. zeylanica) were consistently distinguished in the analyses for the three molecular markers.
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spelling Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regionsAlgaeITS2MatKMolecular phylogenyOospore wall ultraestrutureRbcLSubgenus charopsisSubgenus grovesiaSubsection willdenowiaSouth American studies on the genus Chara are relatively scarce, most consisting of floristic surveys and using only traditional morphological characters. This study is a first approach to the systematics of the genus Chara applying modern techniques (DNA sequences and oospore SEM analyses) in addition to the alpha-taxonomy investigations that have been conducted in Brazil. Twelve populations of Chara were analyzed from the midwest and southeast regions of Brazil. Sequences of three molecular markers were applied to infer phylogenies. The ultrastructure of the oospore wall and currently used morphological characters were analyzed for Chara populations. Maximum likelihood and Bayesian analyses of sequences of rbcL, ITS2, and matK were congruent in that they grouped the species in six clades, each representing one species: Chara braunii C.C. Gmelin, C. foliolosa C.L.Willdenow, C. guairensis R.Bicudo, C. haitensis M.P.J.F. Turpin, C. hydropitys H. Reichenbach and C. rusbyana M. Howe. Morphological characters, including ultrastructure of oospore wall, provided good evidences to characterize each species. Molecular data supported the recent view that some traditional infra-generic taxa (e.g. subgenus Charopsis and subsection Willdenowia) are not supported in phylogenetic analyses, whereas some species (e.g. C. foliolosa, C. haitensis, C. hydropitys and C. rusbyana previously considered as varieties and forms of C. zeylanica) were consistently distinguished in the analyses for the three molecular markers.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Federal University of Mato Grosso, Campus of SinopDepartament of Zoology and Botany São Paulo State UniversityDepartament of Zoology and Botany São Paulo State UniversityFAPESP: 2012/12016-6Federal University of Mato GrossoUniversidade Estadual Paulista (UNESP)Borges, Fabio RenatoNecchi, Orlando [UNESP]2022-04-28T19:05:59Z2022-04-28T19:05:59Z2017-03-31info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article101-121http://dx.doi.org/10.11646/phytotaxa.302.2.1Phytotaxa, v. 302, n. 2, p. 101-121, 2017.1179-31631179-3155http://hdl.handle.net/11449/22082010.11646/phytotaxa.302.2.12-s2.0-85016954033Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPhytotaxainfo:eu-repo/semantics/openAccess2022-04-28T19:05:59Zoai:repositorio.unesp.br:11449/220820Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-28T19:05:59Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
title Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
spellingShingle Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
Borges, Fabio Renato
Algae
ITS2
MatK
Molecular phylogeny
Oospore wall ultraestruture
RbcL
Subgenus charopsis
Subgenus grovesia
Subsection willdenowia
title_short Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
title_full Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
title_fullStr Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
title_full_unstemmed Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
title_sort Taxonomy and phylogeny of Chara (Charophyceae, characeae) from Brazil with emphasis on the midwest and southeast regions
author Borges, Fabio Renato
author_facet Borges, Fabio Renato
Necchi, Orlando [UNESP]
author_role author
author2 Necchi, Orlando [UNESP]
author2_role author
dc.contributor.none.fl_str_mv Federal University of Mato Grosso
Universidade Estadual Paulista (UNESP)
dc.contributor.author.fl_str_mv Borges, Fabio Renato
Necchi, Orlando [UNESP]
dc.subject.por.fl_str_mv Algae
ITS2
MatK
Molecular phylogeny
Oospore wall ultraestruture
RbcL
Subgenus charopsis
Subgenus grovesia
Subsection willdenowia
topic Algae
ITS2
MatK
Molecular phylogeny
Oospore wall ultraestruture
RbcL
Subgenus charopsis
Subgenus grovesia
Subsection willdenowia
description South American studies on the genus Chara are relatively scarce, most consisting of floristic surveys and using only traditional morphological characters. This study is a first approach to the systematics of the genus Chara applying modern techniques (DNA sequences and oospore SEM analyses) in addition to the alpha-taxonomy investigations that have been conducted in Brazil. Twelve populations of Chara were analyzed from the midwest and southeast regions of Brazil. Sequences of three molecular markers were applied to infer phylogenies. The ultrastructure of the oospore wall and currently used morphological characters were analyzed for Chara populations. Maximum likelihood and Bayesian analyses of sequences of rbcL, ITS2, and matK were congruent in that they grouped the species in six clades, each representing one species: Chara braunii C.C. Gmelin, C. foliolosa C.L.Willdenow, C. guairensis R.Bicudo, C. haitensis M.P.J.F. Turpin, C. hydropitys H. Reichenbach and C. rusbyana M. Howe. Morphological characters, including ultrastructure of oospore wall, provided good evidences to characterize each species. Molecular data supported the recent view that some traditional infra-generic taxa (e.g. subgenus Charopsis and subsection Willdenowia) are not supported in phylogenetic analyses, whereas some species (e.g. C. foliolosa, C. haitensis, C. hydropitys and C. rusbyana previously considered as varieties and forms of C. zeylanica) were consistently distinguished in the analyses for the three molecular markers.
publishDate 2017
dc.date.none.fl_str_mv 2017-03-31
2022-04-28T19:05:59Z
2022-04-28T19:05:59Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.11646/phytotaxa.302.2.1
Phytotaxa, v. 302, n. 2, p. 101-121, 2017.
1179-3163
1179-3155
http://hdl.handle.net/11449/220820
10.11646/phytotaxa.302.2.1
2-s2.0-85016954033
url http://dx.doi.org/10.11646/phytotaxa.302.2.1
http://hdl.handle.net/11449/220820
identifier_str_mv Phytotaxa, v. 302, n. 2, p. 101-121, 2017.
1179-3163
1179-3155
10.11646/phytotaxa.302.2.1
2-s2.0-85016954033
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Phytotaxa
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 101-121
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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