Genomic selection for meat quality traits in Nelore cattle
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.meatsci.2018.09.010 http://hdl.handle.net/11449/189776 |
Resumo: | The objective of this study was to present heritability estimates and accuracy of genomic prediction using different methods for meat quality traits in Nelore cattle. Approximately 5000 animals with phenotypes and genotypes of 412,000 SNPs, were divided into two groups: (1) training population: animals born from 2008 to 2013 and (2) validation population: animals born in 2014. A single-trait animal model was used to estimate heritability and to adjust the phenotype. The methods of GBLUP, Improved Bayesian Lasso and Bayes Cπ were performed to estimate the SNP effects. Accuracy of genomic prediction was calculated using Pearson's correlations between direct genomic values and adjusted phenotypes, divided by the square root of heritability of each trait (0.03–0.19). The accuracies varied from 0.23 to 0.73, with the lowest accuracies estimated for traits associated with fat content and the greatest accuracies observed for traits of meat color and tenderness. There were small differences in genomic prediction accuracy between methods. |
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oai:repositorio.unesp.br:11449/189776 |
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Repositório Institucional da UNESP |
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2946 |
spelling |
Genomic selection for meat quality traits in Nelore cattleFat depositionGenomicsMeat compositionMeat tendernessThe objective of this study was to present heritability estimates and accuracy of genomic prediction using different methods for meat quality traits in Nelore cattle. Approximately 5000 animals with phenotypes and genotypes of 412,000 SNPs, were divided into two groups: (1) training population: animals born from 2008 to 2013 and (2) validation population: animals born in 2014. A single-trait animal model was used to estimate heritability and to adjust the phenotype. The methods of GBLUP, Improved Bayesian Lasso and Bayes Cπ were performed to estimate the SNP effects. Accuracy of genomic prediction was calculated using Pearson's correlations between direct genomic values and adjusted phenotypes, divided by the square root of heritability of each trait (0.03–0.19). The accuracies varied from 0.23 to 0.73, with the lowest accuracies estimated for traits associated with fat content and the greatest accuracies observed for traits of meat color and tenderness. There were small differences in genomic prediction accuracy between methods.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)São Paulo State University (Unesp) School of Agricultural and Veterinarian SciencesCentre for Genetic Improvement of Livestock University of GuelphBRF CompanyFederal University of Pelotas (UFPel)São Paulo State University (Unesp) College of Veterinary and Animal ScienceSão Paulo State University (Unesp) School of Agricultural and Veterinarian SciencesSão Paulo State University (Unesp) College of Veterinary and Animal ScienceUniversidade Estadual Paulista (Unesp)University of GuelphBRF CompanyUniversidade Federal de Pernambuco (UFPE)Magalhães, Ana Fabrícia Braga [UNESP]Schenkel, Flavio SchrammGarcia, Diogo AnastácioGordo, Daniel Gustavo Mansan [UNESP]Tonussi, Rafael Lara [UNESP]Espigolan, Rafael [UNESP]Silva, Rafael Medeiros de Oliveira [UNESP]Braz, Camila Urbano [UNESP]Fernandes Júnior, Gerardo Alves [UNESP]Baldi, Fernando [UNESP]Carvalheiro, Roberto [UNESP]Boligon, Arione Augustide Oliveira, Henrique Nunes [UNESP]Chardulo, Luis Arthur Loyola [UNESP]de Albuquerque, Lucia Galvão [UNESP]2019-10-06T16:51:46Z2019-10-06T16:51:46Z2019-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article32-37http://dx.doi.org/10.1016/j.meatsci.2018.09.010Meat Science, v. 148, p. 32-37.0309-1740http://hdl.handle.net/11449/18977610.1016/j.meatsci.2018.09.0102-s2.0-85054227847Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMeat Scienceinfo:eu-repo/semantics/openAccess2024-06-07T18:40:38Zoai:repositorio.unesp.br:11449/189776Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T15:41:48.238502Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Genomic selection for meat quality traits in Nelore cattle |
title |
Genomic selection for meat quality traits in Nelore cattle |
spellingShingle |
Genomic selection for meat quality traits in Nelore cattle Magalhães, Ana Fabrícia Braga [UNESP] Fat deposition Genomics Meat composition Meat tenderness |
title_short |
Genomic selection for meat quality traits in Nelore cattle |
title_full |
Genomic selection for meat quality traits in Nelore cattle |
title_fullStr |
Genomic selection for meat quality traits in Nelore cattle |
title_full_unstemmed |
Genomic selection for meat quality traits in Nelore cattle |
title_sort |
Genomic selection for meat quality traits in Nelore cattle |
author |
Magalhães, Ana Fabrícia Braga [UNESP] |
author_facet |
Magalhães, Ana Fabrícia Braga [UNESP] Schenkel, Flavio Schramm Garcia, Diogo Anastácio Gordo, Daniel Gustavo Mansan [UNESP] Tonussi, Rafael Lara [UNESP] Espigolan, Rafael [UNESP] Silva, Rafael Medeiros de Oliveira [UNESP] Braz, Camila Urbano [UNESP] Fernandes Júnior, Gerardo Alves [UNESP] Baldi, Fernando [UNESP] Carvalheiro, Roberto [UNESP] Boligon, Arione Augusti de Oliveira, Henrique Nunes [UNESP] Chardulo, Luis Arthur Loyola [UNESP] de Albuquerque, Lucia Galvão [UNESP] |
author_role |
author |
author2 |
Schenkel, Flavio Schramm Garcia, Diogo Anastácio Gordo, Daniel Gustavo Mansan [UNESP] Tonussi, Rafael Lara [UNESP] Espigolan, Rafael [UNESP] Silva, Rafael Medeiros de Oliveira [UNESP] Braz, Camila Urbano [UNESP] Fernandes Júnior, Gerardo Alves [UNESP] Baldi, Fernando [UNESP] Carvalheiro, Roberto [UNESP] Boligon, Arione Augusti de Oliveira, Henrique Nunes [UNESP] Chardulo, Luis Arthur Loyola [UNESP] de Albuquerque, Lucia Galvão [UNESP] |
author2_role |
author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) University of Guelph BRF Company Universidade Federal de Pernambuco (UFPE) |
dc.contributor.author.fl_str_mv |
Magalhães, Ana Fabrícia Braga [UNESP] Schenkel, Flavio Schramm Garcia, Diogo Anastácio Gordo, Daniel Gustavo Mansan [UNESP] Tonussi, Rafael Lara [UNESP] Espigolan, Rafael [UNESP] Silva, Rafael Medeiros de Oliveira [UNESP] Braz, Camila Urbano [UNESP] Fernandes Júnior, Gerardo Alves [UNESP] Baldi, Fernando [UNESP] Carvalheiro, Roberto [UNESP] Boligon, Arione Augusti de Oliveira, Henrique Nunes [UNESP] Chardulo, Luis Arthur Loyola [UNESP] de Albuquerque, Lucia Galvão [UNESP] |
dc.subject.por.fl_str_mv |
Fat deposition Genomics Meat composition Meat tenderness |
topic |
Fat deposition Genomics Meat composition Meat tenderness |
description |
The objective of this study was to present heritability estimates and accuracy of genomic prediction using different methods for meat quality traits in Nelore cattle. Approximately 5000 animals with phenotypes and genotypes of 412,000 SNPs, were divided into two groups: (1) training population: animals born from 2008 to 2013 and (2) validation population: animals born in 2014. A single-trait animal model was used to estimate heritability and to adjust the phenotype. The methods of GBLUP, Improved Bayesian Lasso and Bayes Cπ were performed to estimate the SNP effects. Accuracy of genomic prediction was calculated using Pearson's correlations between direct genomic values and adjusted phenotypes, divided by the square root of heritability of each trait (0.03–0.19). The accuracies varied from 0.23 to 0.73, with the lowest accuracies estimated for traits associated with fat content and the greatest accuracies observed for traits of meat color and tenderness. There were small differences in genomic prediction accuracy between methods. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-10-06T16:51:46Z 2019-10-06T16:51:46Z 2019-02-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.meatsci.2018.09.010 Meat Science, v. 148, p. 32-37. 0309-1740 http://hdl.handle.net/11449/189776 10.1016/j.meatsci.2018.09.010 2-s2.0-85054227847 |
url |
http://dx.doi.org/10.1016/j.meatsci.2018.09.010 http://hdl.handle.net/11449/189776 |
identifier_str_mv |
Meat Science, v. 148, p. 32-37. 0309-1740 10.1016/j.meatsci.2018.09.010 2-s2.0-85054227847 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Meat Science |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
32-37 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128552129789952 |