Genomic selection for meat quality traits in Nelore cattle

Detalhes bibliográficos
Autor(a) principal: Magalhães, Ana Fabrícia Braga [UNESP]
Data de Publicação: 2019
Outros Autores: Schenkel, Flavio Schramm, Garcia, Diogo Anastácio, Gordo, Daniel Gustavo Mansan [UNESP], Tonussi, Rafael Lara [UNESP], Espigolan, Rafael [UNESP], Silva, Rafael Medeiros de Oliveira [UNESP], Braz, Camila Urbano [UNESP], Fernandes Júnior, Gerardo Alves [UNESP], Baldi, Fernando [UNESP], Carvalheiro, Roberto [UNESP], Boligon, Arione Augusti, de Oliveira, Henrique Nunes [UNESP], Chardulo, Luis Arthur Loyola [UNESP], de Albuquerque, Lucia Galvão [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.meatsci.2018.09.010
http://hdl.handle.net/11449/189776
Resumo: The objective of this study was to present heritability estimates and accuracy of genomic prediction using different methods for meat quality traits in Nelore cattle. Approximately 5000 animals with phenotypes and genotypes of 412,000 SNPs, were divided into two groups: (1) training population: animals born from 2008 to 2013 and (2) validation population: animals born in 2014. A single-trait animal model was used to estimate heritability and to adjust the phenotype. The methods of GBLUP, Improved Bayesian Lasso and Bayes Cπ were performed to estimate the SNP effects. Accuracy of genomic prediction was calculated using Pearson's correlations between direct genomic values and adjusted phenotypes, divided by the square root of heritability of each trait (0.03–0.19). The accuracies varied from 0.23 to 0.73, with the lowest accuracies estimated for traits associated with fat content and the greatest accuracies observed for traits of meat color and tenderness. There were small differences in genomic prediction accuracy between methods.
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spelling Genomic selection for meat quality traits in Nelore cattleFat depositionGenomicsMeat compositionMeat tendernessThe objective of this study was to present heritability estimates and accuracy of genomic prediction using different methods for meat quality traits in Nelore cattle. Approximately 5000 animals with phenotypes and genotypes of 412,000 SNPs, were divided into two groups: (1) training population: animals born from 2008 to 2013 and (2) validation population: animals born in 2014. A single-trait animal model was used to estimate heritability and to adjust the phenotype. The methods of GBLUP, Improved Bayesian Lasso and Bayes Cπ were performed to estimate the SNP effects. Accuracy of genomic prediction was calculated using Pearson's correlations between direct genomic values and adjusted phenotypes, divided by the square root of heritability of each trait (0.03–0.19). The accuracies varied from 0.23 to 0.73, with the lowest accuracies estimated for traits associated with fat content and the greatest accuracies observed for traits of meat color and tenderness. There were small differences in genomic prediction accuracy between methods.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)São Paulo State University (Unesp) School of Agricultural and Veterinarian SciencesCentre for Genetic Improvement of Livestock University of GuelphBRF CompanyFederal University of Pelotas (UFPel)São Paulo State University (Unesp) College of Veterinary and Animal ScienceSão Paulo State University (Unesp) School of Agricultural and Veterinarian SciencesSão Paulo State University (Unesp) College of Veterinary and Animal ScienceUniversidade Estadual Paulista (Unesp)University of GuelphBRF CompanyUniversidade Federal de Pernambuco (UFPE)Magalhães, Ana Fabrícia Braga [UNESP]Schenkel, Flavio SchrammGarcia, Diogo AnastácioGordo, Daniel Gustavo Mansan [UNESP]Tonussi, Rafael Lara [UNESP]Espigolan, Rafael [UNESP]Silva, Rafael Medeiros de Oliveira [UNESP]Braz, Camila Urbano [UNESP]Fernandes Júnior, Gerardo Alves [UNESP]Baldi, Fernando [UNESP]Carvalheiro, Roberto [UNESP]Boligon, Arione Augustide Oliveira, Henrique Nunes [UNESP]Chardulo, Luis Arthur Loyola [UNESP]de Albuquerque, Lucia Galvão [UNESP]2019-10-06T16:51:46Z2019-10-06T16:51:46Z2019-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article32-37http://dx.doi.org/10.1016/j.meatsci.2018.09.010Meat Science, v. 148, p. 32-37.0309-1740http://hdl.handle.net/11449/18977610.1016/j.meatsci.2018.09.0102-s2.0-85054227847Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMeat Scienceinfo:eu-repo/semantics/openAccess2024-06-07T18:40:38Zoai:repositorio.unesp.br:11449/189776Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T15:41:48.238502Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genomic selection for meat quality traits in Nelore cattle
title Genomic selection for meat quality traits in Nelore cattle
spellingShingle Genomic selection for meat quality traits in Nelore cattle
Magalhães, Ana Fabrícia Braga [UNESP]
Fat deposition
Genomics
Meat composition
Meat tenderness
title_short Genomic selection for meat quality traits in Nelore cattle
title_full Genomic selection for meat quality traits in Nelore cattle
title_fullStr Genomic selection for meat quality traits in Nelore cattle
title_full_unstemmed Genomic selection for meat quality traits in Nelore cattle
title_sort Genomic selection for meat quality traits in Nelore cattle
author Magalhães, Ana Fabrícia Braga [UNESP]
author_facet Magalhães, Ana Fabrícia Braga [UNESP]
Schenkel, Flavio Schramm
Garcia, Diogo Anastácio
Gordo, Daniel Gustavo Mansan [UNESP]
Tonussi, Rafael Lara [UNESP]
Espigolan, Rafael [UNESP]
Silva, Rafael Medeiros de Oliveira [UNESP]
Braz, Camila Urbano [UNESP]
Fernandes Júnior, Gerardo Alves [UNESP]
Baldi, Fernando [UNESP]
Carvalheiro, Roberto [UNESP]
Boligon, Arione Augusti
de Oliveira, Henrique Nunes [UNESP]
Chardulo, Luis Arthur Loyola [UNESP]
de Albuquerque, Lucia Galvão [UNESP]
author_role author
author2 Schenkel, Flavio Schramm
Garcia, Diogo Anastácio
Gordo, Daniel Gustavo Mansan [UNESP]
Tonussi, Rafael Lara [UNESP]
Espigolan, Rafael [UNESP]
Silva, Rafael Medeiros de Oliveira [UNESP]
Braz, Camila Urbano [UNESP]
Fernandes Júnior, Gerardo Alves [UNESP]
Baldi, Fernando [UNESP]
Carvalheiro, Roberto [UNESP]
Boligon, Arione Augusti
de Oliveira, Henrique Nunes [UNESP]
Chardulo, Luis Arthur Loyola [UNESP]
de Albuquerque, Lucia Galvão [UNESP]
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
University of Guelph
BRF Company
Universidade Federal de Pernambuco (UFPE)
dc.contributor.author.fl_str_mv Magalhães, Ana Fabrícia Braga [UNESP]
Schenkel, Flavio Schramm
Garcia, Diogo Anastácio
Gordo, Daniel Gustavo Mansan [UNESP]
Tonussi, Rafael Lara [UNESP]
Espigolan, Rafael [UNESP]
Silva, Rafael Medeiros de Oliveira [UNESP]
Braz, Camila Urbano [UNESP]
Fernandes Júnior, Gerardo Alves [UNESP]
Baldi, Fernando [UNESP]
Carvalheiro, Roberto [UNESP]
Boligon, Arione Augusti
de Oliveira, Henrique Nunes [UNESP]
Chardulo, Luis Arthur Loyola [UNESP]
de Albuquerque, Lucia Galvão [UNESP]
dc.subject.por.fl_str_mv Fat deposition
Genomics
Meat composition
Meat tenderness
topic Fat deposition
Genomics
Meat composition
Meat tenderness
description The objective of this study was to present heritability estimates and accuracy of genomic prediction using different methods for meat quality traits in Nelore cattle. Approximately 5000 animals with phenotypes and genotypes of 412,000 SNPs, were divided into two groups: (1) training population: animals born from 2008 to 2013 and (2) validation population: animals born in 2014. A single-trait animal model was used to estimate heritability and to adjust the phenotype. The methods of GBLUP, Improved Bayesian Lasso and Bayes Cπ were performed to estimate the SNP effects. Accuracy of genomic prediction was calculated using Pearson's correlations between direct genomic values and adjusted phenotypes, divided by the square root of heritability of each trait (0.03–0.19). The accuracies varied from 0.23 to 0.73, with the lowest accuracies estimated for traits associated with fat content and the greatest accuracies observed for traits of meat color and tenderness. There were small differences in genomic prediction accuracy between methods.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-06T16:51:46Z
2019-10-06T16:51:46Z
2019-02-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.meatsci.2018.09.010
Meat Science, v. 148, p. 32-37.
0309-1740
http://hdl.handle.net/11449/189776
10.1016/j.meatsci.2018.09.010
2-s2.0-85054227847
url http://dx.doi.org/10.1016/j.meatsci.2018.09.010
http://hdl.handle.net/11449/189776
identifier_str_mv Meat Science, v. 148, p. 32-37.
0309-1740
10.1016/j.meatsci.2018.09.010
2-s2.0-85054227847
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Meat Science
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 32-37
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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