An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites

Detalhes bibliográficos
Autor(a) principal: Wang, Jing
Data de Publicação: 2023
Outros Autores: Song, Guangqin, Liddell, Michael, Morellato, Patricia [UNESP], Lee, Calvin K.F., Yang, Dedi, Alberton, Bruna [UNESP], Detto, Matteo, Ma, Xuanlong, Zhao, Yingyi, Yeung, Henry C.H., Zhang, Hongsheng, Ng, Michael, Nelson, Bruce W., Huete, Alfredo, Wu, Jin
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.rse.2022.113429
http://hdl.handle.net/11449/246610
Resumo: In tropical forests, leaf phenology signals leaf-on/off status and exhibits considerable variability across scales from a single tree-crown to the entire forest ecosystem. Such phenology signals importantly regulate large-scale biogeochemical cycles and regional climate. PlanetScope CubeSats data with a 3-m resolution and near-daily global coverage provide an unprecedented opportunity to monitor both fine- and ecosystem-scale phenology variability along large environmental gradients. However, a scalable method that accurately characterizes leaf phenology from PlanetScope with biophysically meaningful metrics remains lacking. We developed an index-guided, ecologically constrained autoencoder (IG-ECAE) method to automatically derive a deciduousness metric (percentage of upper tree canopies with leaf-off status within an image pixel) from PlanetScope. The IG-ECAE first estimated the reflectance spectra of leafy/leafless canopies based on their spectral indices characteristics, then used the derived reflectance spectra to guide an autoencoder deep learning method with additional ecological constraints to refine the reflectance spectra, and finally used linear spectral unmixing to estimate the relative abundance of leafless canopies (or deciduousness) per PlanetScope image pixel. We tested the IG-ECAE method at 16 tropical forest sites spanning multiple continents and a large precipitation gradient (1470–2819 mm year−1). Among these sites, we evaluated the PlanetScope-derived deciduousness against corresponding measures derived from WorldView-2 (n = 9 sites) and local phenocams (n = 9 sites). Our results show that PlanetScope-derived deciduousness agrees: 1) with that derived from WorldView-2 at the patch level (90 m × 90 m) with r2 = 0.89 across all sites; and 2) with that derived from phenocams to quantify ecosystem-scale seasonality with r2 ranging from 0.62 to 0.96. These results demonstrate the effectiveness and scalability of IG-ECAE in characterizing the wide variability in deciduousness across scales from pixels to forest ecosystems, and from a single date to the full annual cycle, indicating the potential for using high-resolution satellites to track the large-scale phenological patterns and response of tropical forests to climate change.
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spelling An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellitesCarbon cyclesDeciduousnessEnvironmental gradientMachine learningMulti-scale remote sensingTropical forestsIn tropical forests, leaf phenology signals leaf-on/off status and exhibits considerable variability across scales from a single tree-crown to the entire forest ecosystem. Such phenology signals importantly regulate large-scale biogeochemical cycles and regional climate. PlanetScope CubeSats data with a 3-m resolution and near-daily global coverage provide an unprecedented opportunity to monitor both fine- and ecosystem-scale phenology variability along large environmental gradients. However, a scalable method that accurately characterizes leaf phenology from PlanetScope with biophysically meaningful metrics remains lacking. We developed an index-guided, ecologically constrained autoencoder (IG-ECAE) method to automatically derive a deciduousness metric (percentage of upper tree canopies with leaf-off status within an image pixel) from PlanetScope. The IG-ECAE first estimated the reflectance spectra of leafy/leafless canopies based on their spectral indices characteristics, then used the derived reflectance spectra to guide an autoencoder deep learning method with additional ecological constraints to refine the reflectance spectra, and finally used linear spectral unmixing to estimate the relative abundance of leafless canopies (or deciduousness) per PlanetScope image pixel. We tested the IG-ECAE method at 16 tropical forest sites spanning multiple continents and a large precipitation gradient (1470–2819 mm year−1). Among these sites, we evaluated the PlanetScope-derived deciduousness against corresponding measures derived from WorldView-2 (n = 9 sites) and local phenocams (n = 9 sites). Our results show that PlanetScope-derived deciduousness agrees: 1) with that derived from WorldView-2 at the patch level (90 m × 90 m) with r2 = 0.89 across all sites; and 2) with that derived from phenocams to quantify ecosystem-scale seasonality with r2 ranging from 0.62 to 0.96. These results demonstrate the effectiveness and scalability of IG-ECAE in characterizing the wide variability in deciduousness across scales from pixels to forest ecosystems, and from a single date to the full annual cycle, indicating the potential for using high-resolution satellites to track the large-scale phenological patterns and response of tropical forests to climate change.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)University of Hong KongNational Natural Science Foundation of ChinaU.S. Department of EnergySchool of Ecology Shenzhen Campus of Sun Yat-sen University, GuangdongResearch Area of Ecology and Biodiversity School for Biological Sciences The University of Hong KongCentre for Tropical Environmental and Sustainability Science College of Science and Engineering James Cook UniversityDepartment of Biodiversity Bioscience Institute São Paulo State University UNESP, São PauloDepartment of Environmental and Climate Sciences Brookhaven National LaboratoryInstituto Tecnológico Vale, ParáDepartment of Ecology and Evolutionary Biology Princeton UniversityCollege of Earth and Environmental Sciences Lanzhou UniversityInternational Research Center of Big Data for Sustainable Development GoalsKey Laboratory of Geographic Information Science (Ministry of Education) East China Normal UniversityDepartment of Geography The University of Hong KongInstitute for Climate and Carbon Neutrality The University of Hong KongInstitute of Data Science and Department of Mathematics The University of Hong KongNational Institute for Amazon Research (INPA)School of Life Sciences University of Technology SydneyDepartment of Biodiversity Bioscience Institute São Paulo State University UNESP, São PauloShenzhen Campus of Sun Yat-sen UniversityThe University of Hong KongJames Cook UniversityUniversidade Estadual Paulista (UNESP)Brookhaven National LaboratoryInstituto Tecnológico ValePrinceton UniversityLanzhou UniversityInternational Research Center of Big Data for Sustainable Development GoalsEast China Normal UniversityNational Institute for Amazon Research (INPA)University of Technology SydneyWang, JingSong, GuangqinLiddell, MichaelMorellato, Patricia [UNESP]Lee, Calvin K.F.Yang, DediAlberton, Bruna [UNESP]Detto, MatteoMa, XuanlongZhao, YingyiYeung, Henry C.H.Zhang, HongshengNg, MichaelNelson, Bruce W.Huete, AlfredoWu, Jin2023-07-29T12:45:40Z2023-07-29T12:45:40Z2023-03-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.rse.2022.113429Remote Sensing of Environment, v. 286.0034-4257http://hdl.handle.net/11449/24661010.1016/j.rse.2022.1134292-s2.0-85145773613Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengRemote Sensing of Environmentinfo:eu-repo/semantics/openAccess2023-07-29T12:45:40Zoai:repositorio.unesp.br:11449/246610Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:37:23.832315Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
title An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
spellingShingle An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
Wang, Jing
Carbon cycles
Deciduousness
Environmental gradient
Machine learning
Multi-scale remote sensing
Tropical forests
title_short An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
title_full An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
title_fullStr An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
title_full_unstemmed An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
title_sort An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites
author Wang, Jing
author_facet Wang, Jing
Song, Guangqin
Liddell, Michael
Morellato, Patricia [UNESP]
Lee, Calvin K.F.
Yang, Dedi
Alberton, Bruna [UNESP]
Detto, Matteo
Ma, Xuanlong
Zhao, Yingyi
Yeung, Henry C.H.
Zhang, Hongsheng
Ng, Michael
Nelson, Bruce W.
Huete, Alfredo
Wu, Jin
author_role author
author2 Song, Guangqin
Liddell, Michael
Morellato, Patricia [UNESP]
Lee, Calvin K.F.
Yang, Dedi
Alberton, Bruna [UNESP]
Detto, Matteo
Ma, Xuanlong
Zhao, Yingyi
Yeung, Henry C.H.
Zhang, Hongsheng
Ng, Michael
Nelson, Bruce W.
Huete, Alfredo
Wu, Jin
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Shenzhen Campus of Sun Yat-sen University
The University of Hong Kong
James Cook University
Universidade Estadual Paulista (UNESP)
Brookhaven National Laboratory
Instituto Tecnológico Vale
Princeton University
Lanzhou University
International Research Center of Big Data for Sustainable Development Goals
East China Normal University
National Institute for Amazon Research (INPA)
University of Technology Sydney
dc.contributor.author.fl_str_mv Wang, Jing
Song, Guangqin
Liddell, Michael
Morellato, Patricia [UNESP]
Lee, Calvin K.F.
Yang, Dedi
Alberton, Bruna [UNESP]
Detto, Matteo
Ma, Xuanlong
Zhao, Yingyi
Yeung, Henry C.H.
Zhang, Hongsheng
Ng, Michael
Nelson, Bruce W.
Huete, Alfredo
Wu, Jin
dc.subject.por.fl_str_mv Carbon cycles
Deciduousness
Environmental gradient
Machine learning
Multi-scale remote sensing
Tropical forests
topic Carbon cycles
Deciduousness
Environmental gradient
Machine learning
Multi-scale remote sensing
Tropical forests
description In tropical forests, leaf phenology signals leaf-on/off status and exhibits considerable variability across scales from a single tree-crown to the entire forest ecosystem. Such phenology signals importantly regulate large-scale biogeochemical cycles and regional climate. PlanetScope CubeSats data with a 3-m resolution and near-daily global coverage provide an unprecedented opportunity to monitor both fine- and ecosystem-scale phenology variability along large environmental gradients. However, a scalable method that accurately characterizes leaf phenology from PlanetScope with biophysically meaningful metrics remains lacking. We developed an index-guided, ecologically constrained autoencoder (IG-ECAE) method to automatically derive a deciduousness metric (percentage of upper tree canopies with leaf-off status within an image pixel) from PlanetScope. The IG-ECAE first estimated the reflectance spectra of leafy/leafless canopies based on their spectral indices characteristics, then used the derived reflectance spectra to guide an autoencoder deep learning method with additional ecological constraints to refine the reflectance spectra, and finally used linear spectral unmixing to estimate the relative abundance of leafless canopies (or deciduousness) per PlanetScope image pixel. We tested the IG-ECAE method at 16 tropical forest sites spanning multiple continents and a large precipitation gradient (1470–2819 mm year−1). Among these sites, we evaluated the PlanetScope-derived deciduousness against corresponding measures derived from WorldView-2 (n = 9 sites) and local phenocams (n = 9 sites). Our results show that PlanetScope-derived deciduousness agrees: 1) with that derived from WorldView-2 at the patch level (90 m × 90 m) with r2 = 0.89 across all sites; and 2) with that derived from phenocams to quantify ecosystem-scale seasonality with r2 ranging from 0.62 to 0.96. These results demonstrate the effectiveness and scalability of IG-ECAE in characterizing the wide variability in deciduousness across scales from pixels to forest ecosystems, and from a single date to the full annual cycle, indicating the potential for using high-resolution satellites to track the large-scale phenological patterns and response of tropical forests to climate change.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T12:45:40Z
2023-07-29T12:45:40Z
2023-03-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.rse.2022.113429
Remote Sensing of Environment, v. 286.
0034-4257
http://hdl.handle.net/11449/246610
10.1016/j.rse.2022.113429
2-s2.0-85145773613
url http://dx.doi.org/10.1016/j.rse.2022.113429
http://hdl.handle.net/11449/246610
identifier_str_mv Remote Sensing of Environment, v. 286.
0034-4257
10.1016/j.rse.2022.113429
2-s2.0-85145773613
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Remote Sensing of Environment
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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